mRNA_L-elsbetiae_contig5622.13961.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5622.13961.1
Unique NamemRNA_L-elsbetiae_contig5622.13961.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5622.13961.1 vs. uniprot
Match: D7FUY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUY7_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 5.720e-9
Identity = 56/96 (58.33%), Postives = 67/96 (69.79%), Query Frame = 1 
Query: 2179 SSGAAGVSLRPEDG-----------QEAATGEDGEQDDESSCALARKRALLRVRLARQQHELATAVVDAHERGLRAERRXXXXXXXXXXXXSARRD 2433
            SSG A ++ +PE             +++   +D   ++ESSCALARKRALLRVRLARQ+  LATA VDA+ERGLRAER XXXXXXXXXX   ARRD
Sbjct:    6 SSGKAAIAKKPERDWRSFPLVRVAREDSGIDDDDANEEESSCALARKRALLRVRLARQRQSLATAAVDANERGLRAERXXXXXXXXXXXLMKARRD 101
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5622.13961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUY7_ECTSI5.720e-958.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5622contigL-elsbetiae_contig5622:359..3110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2505
Cds size2364
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5622.13961.1prot_L-elsbetiae_contig5622.13961.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5622 359..2969 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816597.65938-CDS-L-elsbetiae_contig5622:358..23881622816597.65938-CDS-L-elsbetiae_contig5622:358..2388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5622 359..2388 -
1691683674.1827757-CDS-L-elsbetiae_contig5622:358..23881691683674.1827757-CDS-L-elsbetiae_contig5622:358..2388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5622 359..2388 -
1622816597.67079-CDS-L-elsbetiae_contig5622:2635..29691622816597.67079-CDS-L-elsbetiae_contig5622:2635..2969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5622 2636..2969 -
1691683674.193743-CDS-L-elsbetiae_contig5622:2635..29691691683674.193743-CDS-L-elsbetiae_contig5622:2635..2969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5622 2636..2969 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816597.6815517-UTR-L-elsbetiae_contig5622:2969..31101622816597.6815517-UTR-L-elsbetiae_contig5622:2969..3110Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5622 2970..3110 -
1691683674.2037144-UTR-L-elsbetiae_contig5622:2969..31101691683674.2037144-UTR-L-elsbetiae_contig5622:2969..3110Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5622 2970..3110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5622.13961.1

>prot_L-elsbetiae_contig5622.13961.1 ID=prot_L-elsbetiae_contig5622.13961.1|Name=mRNA_L-elsbetiae_contig5622.13961.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=788bp
MGCSPHQQEKGELLGCDGTTVLLPPVEKEFSNADSSSGKKFLRNLRTLLL
RIRMAGQLRQGFVLEKHFVELKDLCRRVCVELGATATVSENLWAVVQQRR
GDAENFHQHSNGPACSLAQDAETVSRAGEILQRAAAARAQDSCAFDVPSS
ALSSPSFYGGGTNKDEQISARCSPRHGLQLRKDSLNPQQDAVAPPTGAES
ASFDNPADSVPPLSFAETLGVGNAVDACLDFIANETEAVVAAAKKRFSRS
ETMDVTSPALPPADWALAVQRLAAWSRKGGEGTIASRLQPTLSLSPTGGN
EIQEPSPPSSASPPQGSGCCSRHFCGLCRAASDKRGATAVVERATQCPGD
EMEDDGTILNHRTAVRRRTQAPRRNLRCALRRSPPLRSEPQQTPSTTKST
PSSLPPPPPPPPWPRAACVEPTVTYFDDGAADGHVVAWRERSLGDHPVNV
VPWATAKACCRQQAAHREAAAPGGCSMRGHMGGDIRDSSSGSNDGVDEQV
SFEEDGRDDDRSELSADDIPRDLWNHESKVSGGGEGDDMRERRCCGYMSG
DADNGCCRKNEDPMGAFSKSTGKSTSRTMLPGRASTRLAAEAVQPATSKA
SVRVEKQSPSRHPSERWSFARFESDLSSERHDPNEEPTSQRRWPSHSAGY
DDDRDGRSDDGGGDAEAVRPGPRECNIEFSSGAAGVSLRPEDGQEAATGE
DGEQDDESSCALARKRALLRVRLARQQHELATAVVDAHERGLRAERRRKR
EEKLAALLISARRDSSGGDIGYGGCSGNQSARGGQLGR
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mRNA from alignment at L-elsbetiae_contig5622:359..3110-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5622.13961.1 ID=mRNA_L-elsbetiae_contig5622.13961.1|Name=mRNA_L-elsbetiae_contig5622.13961.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2752bp|location=Sequence derived from alignment at L-elsbetiae_contig5622:359..3110- (Laminarionema elsbetiae ELsaHSoW15)
GAGAGAGGTAGAGCTTGCGTGTCTGCGGCAGAGCCGAAAAGCTGTGTGGT
ACACGATATGAATCGGTGCGTGTTGATAGTCTAGATTCCAGGGATAAGGA
AATCCAATCACCGGCCTCTCTTTGCCTTGATAATTGGGACGATGGGTTGT
TCTCCACATCAACAAGAAAAGGGAGAACTGCTGGGGTGTGATGGAACGAC
GGTGTTGTTACCACCCGTGGAAAAGGAGTTCAGCAATGCCGACAGCAGCA
GCGGCAAGAAGTTTCTCCGAAACTTGCGCACTCTCCTGCTCCGGATACGA
ATGGCCGGCCAGCTACGGCAGGGTTTCGTGTTGGAAAAACATTTCGTTGA
GCTGAAGGATCTATGCCGAAGGGTTTGCGTCGAGCTCGGAGCGACAGCAA
CAGTATCTGAAAATCTTTGGGCCGTGGTACAACAACGGCGGGGCGATGCT
GAAAACTTCCATCAACACAGCAATGGTGAGTTTTTATGCACGGACGCGGG
TAATGCCGCCCCCCCCTCTCCCCTCGATTGTTTTTGTCAGCGGTACCGCT
GCTGAAGATTATGTGTACCTGTAGTACTCTAGGGTAGATTTTCGTGGCTT
CCTTATCCATGATAACTTGGCTGCCTCTTGAAACGAAATTGACGAGGTTC
GTTCAGAGCGGGTTAGCTGATGATCACCCGAAACGTCATCCCATCCCGCA
TGCGCTCCCGGGTATATCCAAGGCCCCGCTTGCTCCCTCGCACAGGACGC
AGAGACCGTCTCACGTGCTGGGGAGATTCTGCAGAGAGCAGCGGCTGCTA
GAGCGCAAGATAGCTGTGCTTTCGACGTCCCATCATCAGCCCTTTCATCG
CCATCGTTTTATGGCGGCGGCACCAACAAAGACGAGCAGATCAGTGCTCG
TTGTTCTCCTCGGCATGGTCTTCAGTTGAGGAAAGACAGTCTCAACCCTC
AGCAGGATGCGGTAGCCCCTCCAACTGGTGCTGAAAGTGCTTCCTTCGAC
AACCCGGCCGACTCTGTACCTCCGCTTAGTTTCGCTGAGACCTTGGGTGT
GGGGAACGCCGTGGATGCTTGCCTCGACTTCATTGCCAACGAAACGGAAG
CTGTGGTCGCTGCCGCAAAGAAGCGTTTCAGCAGGTCGGAGACCATGGAC
GTGACATCACCAGCACTACCGCCAGCAGACTGGGCGCTCGCCGTTCAACG
TTTGGCGGCATGGTCTAGAAAGGGCGGAGAAGGCACTATAGCATCGCGTC
TGCAACCGACTTTGTCGTTGTCTCCAACAGGAGGAAACGAAATACAGGAA
CCATCTCCACCATCATCGGCATCTCCCCCACAGGGTTCCGGATGCTGCAG
CAGACACTTCTGTGGGCTTTGTCGGGCAGCGAGCGACAAACGAGGGGCCA
CTGCGGTAGTAGAACGCGCTACTCAGTGTCCTGGCGATGAGATGGAAGAC
GATGGTACGATTCTCAATCATCGGACCGCCGTGCGTCGACGCACGCAGGC
ACCTCGTCGGAATTTGCGATGCGCACTCAGGAGGAGTCCCCCCTTGCGGA
GTGAGCCGCAGCAAACACCATCCACTACAAAATCAACGCCGTCGTCGTTG
CCGCCGCCGCCGCCGCCGCCGCCATGGCCGAGGGCAGCGTGTGTTGAACC
AACGGTCACTTACTTCGATGACGGAGCGGCGGACGGGCATGTCGTGGCGT
GGCGAGAGCGGTCTCTTGGTGACCACCCCGTGAATGTTGTACCTTGGGCT
ACCGCGAAAGCTTGCTGTCGTCAACAAGCAGCCCATCGGGAAGCAGCAGC
TCCGGGGGGCTGTTCCATGAGAGGGCACATGGGCGGGGATATACGAGACA
GTAGCAGTGGATCGAATGATGGGGTTGATGAGCAGGTATCGTTCGAAGAG
GATGGGCGAGACGACGACAGGTCGGAGCTGTCGGCAGACGATATACCTCG
GGATCTATGGAATCACGAGTCCAAGGTTAGTGGTGGCGGCGAAGGTGATG
ACATGAGAGAGCGAAGGTGCTGTGGCTACATGTCTGGTGACGCAGACAAC
GGATGCTGTCGAAAGAACGAAGACCCCATGGGGGCGTTCAGTAAGTCAAC
CGGAAAAAGCACGTCACGCACGATGCTCCCGGGCAGAGCATCTACGCGTC
TTGCTGCGGAGGCTGTTCAGCCTGCAACATCAAAGGCGTCCGTGCGTGTG
GAAAAACAAAGCCCCAGTCGTCACCCATCAGAGCGGTGGTCGTTTGCAAG
GTTTGAAAGCGACCTATCTTCCGAACGGCACGACCCGAACGAGGAACCTA
CGAGTCAGCGGCGGTGGCCCTCGCACTCAGCCGGCTACGACGACGACAGG
GACGGCAGAAGTGACGATGGCGGAGGTGATGCAGAAGCGGTGCGCCCTGG
TCCACGAGAGTGCAACATTGAATTTAGCTCGGGGGCGGCGGGCGTGTCAC
TGAGGCCCGAGGATGGGCAGGAGGCGGCCACCGGCGAGGATGGCGAGCAG
GATGACGAGAGCTCCTGCGCCCTGGCCAGGAAGCGTGCCCTACTGCGCGT
CAGACTCGCCCGGCAACAGCACGAGCTGGCGACAGCTGTCGTGGATGCCC
ACGAGCGAGGGCTCCGAGCAGAGCGTCGCCGGAAGAGAGAAGAGAAACTG
GCGGCGCTCCTGATAAGTGCTCGACGAGACAGCAGCGGTGGTGATATTGG
TTATGGTGGCTGCTCCGGCAACCAGAGCGCTAGGGGAGGACAGTTGGGCC
GG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5622:359..3110-

>mRNA_L-elsbetiae_contig5622.13961.1 ID=mRNA_L-elsbetiae_contig5622.13961.1|Name=mRNA_L-elsbetiae_contig5622.13961.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4728bp|location=Sequence derived from alignment at L-elsbetiae_contig5622:359..3110- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTTGTTCTCCACATCAACAAGAAAAGGGAGAACTGCTGGGGTGTGA
TGGAACGACGGTGTTGTTACCACCCGTGGAAAAGGAGTTCAGCAATGCCG
ACAGCAGCAGCGGCAAGAAGTTTCTCCGAAACTTGCGCACTCTCCTGCTC
CGGATACGAATGGCCGGCCAGCTACGGCAGGGTTTCGTGTTGGAAAAACA
TTTCGTTGAGCTGAAGGATCTATGCCGAAGGGTTTGCGTCGAGCTCGGAG
CGACAGCAACAGTATCTGAAAATCTTTGGGCCGTGGTACAACAACGGCGG
GGCGATGCTGAAAACTTCCATCAACACAGCAATGATGGGTTGTTCTCCAC
ATCAACAAGAAAAGGGAGAACTGCTGGGGTGTGATGGAACGACGGTGTTG
TTACCACCCGTGGAAAAGGAGTTCAGCAATGCCGACAGCAGCAGCGGCAA
GAAGTTTCTCCGAAACTTGCGCACTCTCCTGCTCCGGATACGAATGGCCG
GCCAGCTACGGCAGGGTTTCGTGTTGGAAAAACATTTCGTTGAGCTGAAG
GATCTATGCCGAAGGGTTTGCGTCGAGCTCGGAGCGACAGCAACAGTATC
TGAAAATCTTTGGGCCGTGGTACAACAACGGCGGGGCGATGCTGAAAACT
TCCATCAACACAGCAATGGCCCCGCTTGCTCCCTCGCACAGGACGCAGAG
ACCGTCTCACGTGCTGGGGAGATTCTGCAGAGAGCAGCGGCTGCTAGAGC
GCAAGATAGCTGTGCTTTCGACGTCCCATCATCAGCCCTTTCATCGCCAT
CGTTTTATGGCGGCGGCACCAACAAAGACGAGCAGATCAGTGCTCGTTGT
TCTCCTCGGCATGGTCTTCAGTTGAGGAAAGACAGTCTCAACCCTCAGCA
GGATGCGGTAGCCCCTCCAACTGGTGCTGAAAGTGCTTCCTTCGACAACC
CGGCCGACTCTGTACCTCCGCTTAGTTTCGCTGAGACCTTGGGTGTGGGG
AACGCCGTGGATGCTTGCCTCGACTTCATTGCCAACGAAACGGAAGCTGT
GGTCGCTGCCGCAAAGAAGCGTTTCAGCAGGTCGGAGACCATGGACGTGA
CATCACCAGCACTACCGCCAGCAGACTGGGCGCTCGCCGTTCAACGTTTG
GCGGCATGGTCTAGAAAGGGCGGAGAAGGCACTATAGCATCGCGTCTGCA
ACCGACTTTGTCGTTGTCTCCAACAGGAGGAAACGAAATACAGGAACCAT
CTCCACCATCATCGGCATCTCCCCCACAGGGTTCCGGATGCTGCAGCAGA
CACTTCTGTGGGCTTTGTCGGGCAGCGAGCGACAAACGAGGGGCCACTGC
GGTAGTAGAACGCGCTACTCAGTGTCCTGGCGATGAGATGGAAGACGATG
GTACGATTCTCAATCATCGGACCGCCGTGCGTCGACGCACGCAGGCACCT
CGTCGGAATTTGCGATGCGCACTCAGGAGGAGTCCCCCCTTGCGGAGTGA
GCCGCAGCAAACACCATCCACTACAAAATCAACGCCGTCGTCGTTGCCGC
CGCCGCCGCCGCCGCCGCCATGGCCGAGGGCAGCGTGTGTTGAACCAACG
GTCACTTACTTCGATGACGGAGCGGCGGACGGGCATGTCGTGGCGTGGCG
AGAGCGGTCTCTTGGTGACCACCCCGTGAATGTTGTACCTTGGGCTACCG
CGAAAGCTTGCTGTCGTCAACAAGCAGCCCATCGGGAAGCAGCAGCTCCG
GGGGGCTGTTCCATGAGAGGGCACATGGGCGGGGATATACGAGACAGTAG
CAGTGGATCGAATGATGGGGTTGATGAGCAGGTATCGTTCGAAGAGGATG
GGCGAGACGACGACAGGTCGGAGCTGTCGGCAGACGATATACCTCGGGAT
CTATGGAATCACGAGTCCAAGGTTAGTGGTGGCGGCGAAGGTGATGACAT
GAGAGAGCGAAGGTGCTGTGGCTACATGTCTGGTGACGCAGACAACGGAT
GCTGTCGAAAGAACGAAGACCCCATGGGGGCGTTCAGTAAGTCAACCGGA
AAAAGCACGTCACGCACGATGCTCCCGGGCAGAGCATCTACGCGTCTTGC
TGCGGAGGCTGTTCAGCCTGCAACATCAAAGGCGTCCGTGCGTGTGGAAA
AACAAAGCCCCAGTCGTCACCCATCAGAGCGGTGGTCGTTTGCAAGGTTT
GAAAGCGACCTATCTTCCGAACGGCACGACCCGAACGAGGAACCTACGAG
TCAGCGGCGGTGGCCCTCGCACTCAGCCGGCTACGACGACGACAGGGACG
GCAGAAGTGACGATGGCGGAGGTGATGCAGAAGCGGTGCGCCCTGGTCCA
CGAGAGTGCAACATTGAATTTAGCTCGGGGGCGGCGGGCGTGTCACTGAG
GCCCGAGGATGGGCAGGAGGCGGCCACCGGCGAGGATGGCGAGCAGGATG
ACGAGAGCTCCTGCGCCCTGGCCAGGAAGCGTGCCCTACTGCGCGTCAGA
CTCGCCCGGCAACAGCACGAGCTGGCGACAGCTGTCGTGGATGCCCACGA
GCGAGGGCTCCGAGCAGAGCGTCGCCGGAAGAGAGAAGAGAAACTGGCGG
CGCTCCTGATAAGTGCTCGACGAGACAGCAGCGGTGGTGATATTGGTTAT
GGTGGCTGCTCCGGCAACCAGAGCGCTAGGGGAGGACAGTTGGGCCGGGC
CCCGCTTGCTCCCTCGCACAGGACGCAGAGACCGTCTCACGTGCTGGGGA
GATTCTGCAGAGAGCAGCGGCTGCTAGAGCGCAAGATAGCTGTGCTTTCG
ACGTCCCATCATCAGCCCTTTCATCGCCATCGTTTTATGGCGGCGGCACC
AACAAAGACGAGCAGATCAGTGCTCGTTGTTCTCCTCGGCATGGTCTTCA
GTTGAGGAAAGACAGTCTCAACCCTCAGCAGGATGCGGTAGCCCCTCCAA
CTGGTGCTGAAAGTGCTTCCTTCGACAACCCGGCCGACTCTGTACCTCCG
CTTAGTTTCGCTGAGACCTTGGGTGTGGGGAACGCCGTGGATGCTTGCCT
CGACTTCATTGCCAACGAAACGGAAGCTGTGGTCGCTGCCGCAAAGAAGC
GTTTCAGCAGGTCGGAGACCATGGACGTGACATCACCAGCACTACCGCCA
GCAGACTGGGCGCTCGCCGTTCAACGTTTGGCGGCATGGTCTAGAAAGGG
CGGAGAAGGCACTATAGCATCGCGTCTGCAACCGACTTTGTCGTTGTCTC
CAACAGGAGGAAACGAAATACAGGAACCATCTCCACCATCATCGGCATCT
CCCCCACAGGGTTCCGGATGCTGCAGCAGACACTTCTGTGGGCTTTGTCG
GGCAGCGAGCGACAAACGAGGGGCCACTGCGGTAGTAGAACGCGCTACTC
AGTGTCCTGGCGATGAGATGGAAGACGATGGTACGATTCTCAATCATCGG
ACCGCCGTGCGTCGACGCACGCAGGCACCTCGTCGGAATTTGCGATGCGC
ACTCAGGAGGAGTCCCCCCTTGCGGAGTGAGCCGCAGCAAACACCATCCA
CTACAAAATCAACGCCGTCGTCGTTGCCGCCGCCGCCGCCGCCGCCGCCA
TGGCCGAGGGCAGCGTGTGTTGAACCAACGGTCACTTACTTCGATGACGG
AGCGGCGGACGGGCATGTCGTGGCGTGGCGAGAGCGGTCTCTTGGTGACC
ACCCCGTGAATGTTGTACCTTGGGCTACCGCGAAAGCTTGCTGTCGTCAA
CAAGCAGCCCATCGGGAAGCAGCAGCTCCGGGGGGCTGTTCCATGAGAGG
GCACATGGGCGGGGATATACGAGACAGTAGCAGTGGATCGAATGATGGGG
TTGATGAGCAGGTATCGTTCGAAGAGGATGGGCGAGACGACGACAGGTCG
GAGCTGTCGGCAGACGATATACCTCGGGATCTATGGAATCACGAGTCCAA
GGTTAGTGGTGGCGGCGAAGGTGATGACATGAGAGAGCGAAGGTGCTGTG
GCTACATGTCTGGTGACGCAGACAACGGATGCTGTCGAAAGAACGAAGAC
CCCATGGGGGCGTTCAGTAAGTCAACCGGAAAAAGCACGTCACGCACGAT
GCTCCCGGGCAGAGCATCTACGCGTCTTGCTGCGGAGGCTGTTCAGCCTG
CAACATCAAAGGCGTCCGTGCGTGTGGAAAAACAAAGCCCCAGTCGTCAC
CCATCAGAGCGGTGGTCGTTTGCAAGGTTTGAAAGCGACCTATCTTCCGA
ACGGCACGACCCGAACGAGGAACCTACGAGTCAGCGGCGGTGGCCCTCGC
ACTCAGCCGGCTACGACGACGACAGGGACGGCAGAAGTGACGATGGCGGA
GGTGATGCAGAAGCGGTGCGCCCTGGTCCACGAGAGTGCAACATTGAATT
TAGCTCGGGGGCGGCGGGCGTGTCACTGAGGCCCGAGGATGGGCAGGAGG
CGGCCACCGGCGAGGATGGCGAGCAGGATGACGAGAGCTCCTGCGCCCTG
GCCAGGAAGCGTGCCCTACTGCGCGTCAGACTCGCCCGGCAACAGCACGA
GCTGGCGACAGCTGTCGTGGATGCCCACGAGCGAGGGCTCCGAGCAGAGC
GTCGCCGGAAGAGAGAAGAGAAACTGGCGGCGCTCCTGATAAGTGCTCGA
CGAGACAGCAGCGGTGGTGATATTGGTTATGGTGGCTGCTCCGGCAACCA
GAGCGCTAGGGGAGGACAGTTGGGCCGG
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