mRNA_L-elsbetiae_contig562.13957.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig562.13957.1
Unique NamemRNA_L-elsbetiae_contig562.13957.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig562.13957.1 vs. uniprot
Match: D7G6V9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V9_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 4.150e-54
Identity = 106/133 (79.70%), Postives = 121/133 (90.98%), Query Frame = 1 
Query:  337 MGVREEMWAQAARDRDALEAELGLRHEEERSRFLEEANERASEIVEEVKKEMAAEAERDRELYAQRAALAEEGQELAREDRKQLQAEKDALARQLQETVEMEDANRRKIIIKFKARENALRQNFEARLREVAG 735
            M VREEMWAQAARDRDALEAEL LRHE ERSRFLEEA ER SEIVEEVK++MA E ERDRELYAQRAALAEEGQE+ARE+R QLQAEK++L RQL+ET+EM+DA+RR+II+KFKARE+A+R+NFEA LRE  G
Sbjct:    1 MAVREEMWAQAARDRDALEAELSLRHEAERSRFLEEAGERDSEIVEEVKRKMAEEMERDRELYAQRAALAEEGQEIAREERNQLQAEKESLLRQLKETMEMDDASRRRIILKFKAREHAMRKNFEAELREARG 133
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig562.13957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6V9_ECTSI4.150e-5479.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig562contigL-elsbetiae_contig562:21142..25775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_012050.1
Exons6
Model size1191
Cds size960
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig562.13957.1prot_L-elsbetiae_contig562.13957.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig562 21148..25550 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816597.1987786-UTR-L-elsbetiae_contig562:21141..211471622816597.1987786-UTR-L-elsbetiae_contig562:21141..21147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig562 21142..21147 +
1691683673.7738957-UTR-L-elsbetiae_contig562:21141..211471691683673.7738957-UTR-L-elsbetiae_contig562:21141..21147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig562 21142..21147 +
1622816597.2839456-UTR-L-elsbetiae_contig562:25550..257751622816597.2839456-UTR-L-elsbetiae_contig562:25550..25775Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig562 25551..25775 +
1691683673.8854227-UTR-L-elsbetiae_contig562:25550..257751691683673.8854227-UTR-L-elsbetiae_contig562:25550..25775Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig562 25551..25775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816597.2119496-CDS-L-elsbetiae_contig562:21147..213261622816597.2119496-CDS-L-elsbetiae_contig562:21147..21326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig562 21148..21326 +
1691683673.7874298-CDS-L-elsbetiae_contig562:21147..213261691683673.7874298-CDS-L-elsbetiae_contig562:21147..21326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig562 21148..21326 +
1622816597.221395-CDS-L-elsbetiae_contig562:22170..223181622816597.221395-CDS-L-elsbetiae_contig562:22170..22318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig562 22171..22318 +
1691683673.8076394-CDS-L-elsbetiae_contig562:22170..223181691683673.8076394-CDS-L-elsbetiae_contig562:22170..22318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig562 22171..22318 +
1622816597.2348306-CDS-L-elsbetiae_contig562:22907..230511622816597.2348306-CDS-L-elsbetiae_contig562:22907..23051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig562 22908..23051 +
1691683673.8405292-CDS-L-elsbetiae_contig562:22907..230511691683673.8405292-CDS-L-elsbetiae_contig562:22907..23051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig562 22908..23051 +
1622816597.2474387-CDS-L-elsbetiae_contig562:23958..240721622816597.2474387-CDS-L-elsbetiae_contig562:23958..24072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig562 23959..24072 +
1691683673.8530715-CDS-L-elsbetiae_contig562:23958..240721691683673.8530715-CDS-L-elsbetiae_contig562:23958..24072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig562 23959..24072 +
1622816597.2620072-CDS-L-elsbetiae_contig562:24720..248121622816597.2620072-CDS-L-elsbetiae_contig562:24720..24812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig562 24721..24812 +
1691683673.8634953-CDS-L-elsbetiae_contig562:24720..248121691683673.8634953-CDS-L-elsbetiae_contig562:24720..24812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig562 24721..24812 +
1622816597.2727742-CDS-L-elsbetiae_contig562:25267..255501622816597.2727742-CDS-L-elsbetiae_contig562:25267..25550Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig562 25268..25550 +
1691683673.8751614-CDS-L-elsbetiae_contig562:25267..255501691683673.8751614-CDS-L-elsbetiae_contig562:25267..25550Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig562 25268..25550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig562.13957.1

>prot_L-elsbetiae_contig562.13957.1 ID=prot_L-elsbetiae_contig562.13957.1|Name=mRNA_L-elsbetiae_contig562.13957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=320bp
MVRANGIVLWVITASSISTTTLQARRTDRSILGKKISPEDVVRVQDARLE
RLQKRIASMSMEGAILAERTRQHREMRLKGNAELKDKVEELKLKLRTERE
RMQKDFEDQLMGVREEMWAQAARDRDALEAELGLRHEEERSRFLEEANER
ASEIVEEVKKEMAAEAERDRELYAQRAALAEEGQELAREDRKQLQAEKDA
LARQLQETVEMEDANRRKIIIKFKARENALRQNFEARLREVAGAGGETPT
STSMPEEREKAAANANRPRVTKTKLPSSASTNSSSAREAHRAAVRSSVPS
GVGAPSSGFQASAGPTAQR*
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mRNA from alignment at L-elsbetiae_contig562:21142..25775+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig562.13957.1 ID=mRNA_L-elsbetiae_contig562.13957.1|Name=mRNA_L-elsbetiae_contig562.13957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4634bp|location=Sequence derived from alignment at L-elsbetiae_contig562:21142..25775+ (Laminarionema elsbetiae ELsaHSoW15)
AGCACGATGGTGAGAGCGAACGGGATTGTCCTATGGGTGATAACTGCTTC
CTCCATCAGCACCACAACGCTGCAGGCTCGCCGTACCGATCGATCAATCT
TGGGCAAGAAAATATCCCCAGAGGATGTCGTTAGGGTTCAGGACGCCCGG
CTGGAGCGCCTCCAAAAGAGAATTGCCTCGATGAGGTACGCCCGACTGCA
TGCATGTGGTGGTGGTAGTGTGTGTGTGTGTGGTGGTATGGGGGTGTGCT
GGTGTGCAGGGAGGAGGTGGTAGCCTTCGTGGTCTGTTTCTTACCTAAAT
AGCCCTCCAAAAAGGCCGTTGTAAAACATGACCAGTATTCCCTCGGCTGG
GCGGGGCGGGACTCAAAACAAGCAGCTGCCGGCCTAGAACCGAGCCATAT
ACTATCTCCGCACGCGGAGCGCGACACGCGATGATATCCTAGAGACACTG
CTCACTTGGGGCGCTTCGGCGTCTATTGGTGTGATATAAGTTCGCCTGGC
GGGAGTAGGCACAGGACACAATGAGGCCCCATCGGTGCTTACATGTGGAA
GTCAAACCCGCCTCCGGAGGCTACCCCTACAGAGGACGAATCCCAAGTGC
AAAATGTTATTGATCGTATCGCATACGGCATGCGATGAAGGGGAGAGGGA
TCAGGTAAGATGCAATACTGTCTACCGCTGTTTTGCTCTGTCAGAGATGA
GTGAATCAAGTTTGCCTATTGTATCCAGACCGTTTTTGTTTTTTGTACCC
CTGTTCTTCCACAGGCAACAGTTCGTACCTGGCATTGCTACGCGTGTGTG
CACGGGTGTGTGTGTACGGGCAAAGCAGCAGTGTGCTCCTGGCTAGCTCT
GGCCCAGCAGTAGTCGGCGCTTCTAGTGATAAAGTGACTGCCTGCCACCA
TTTGGAACCATCACCATTGCCAACTCGCAATTCGGAAACTTGACTCTTGA
CGGCGCATTTTTATTTTTTGCTCAATCAAACGTCTGTGTCTGTTTCTCAC
TGCCCGCCGGCGCTATCCTGGCTATCCAGCATGGAGGGGGCTATCCTGGC
GGAGCGTACAAGGCAACACCGCGAGATGAGGCTCAAGGGCAACGCGGAGC
TGAAAGACAAAGTGGAAGAGTTGAAACTTAAGCTGCGGACCGAGAGAGAG
CGTATGCAGAAGGACTTTGAGGACCAGGTGAGCTTCAGCATGCACAACAT
CCAACCGCCGCACTGCTGAGCAAGATCATACATGGATAACAAGCAACGCT
ACTGCTGCTGTACATATGTTCGAAGTACTCAAATAACATAGCAATGCTGC
ACCATATCATACTTCTGCGGCAACTGCACATACATGAGCTGCTGGCGTGC
AGGCAAGATATCTTGTGCGGCGCGGCTATGCATCGGCATTGGCCCTGTGC
GGCGCAATTCGTTGCTAGACACGAGGCACCCACATGTGCAATAAATAGCA
TTACTCGTGTAGAGAACTAGCATGACGTCACTCGTGTGCCGTCGCTGCTT
GTAACTTCTATTTACGTTGCCCCCTAATTTTGAAAAGTCACGTCTGCACT
TCGGCATGCACGGCAGATATCTACGCCATGTATGGTACGTGGTATTTTGT
GTGGCCGTGTATATCCATTCAATAAGCTGCGATTCACGCTCAACAGCAGT
TCTGCATGAATCGATCAAAGATCCTAACGACCGCCTGCCCTCTTTCTACT
TCCTTCTCACGTCCAACGCTTATCTCCCAAATTCCATCCACCCCACCCCA
CGCCACACCCCACCAGCTGATGGGTGTCCGAGAGGAAATGTGGGCGCAGG
CGGCCCGAGACCGGGATGCCTTGGAGGCGGAGCTGGGGTTGAGGCACGAG
GAGGAACGGTCCAGGTTTTTGGAGGAGGCTAATGAACGCGCCAGCGAGAT
TGTAGAGGAGGTGGGTGTGGCGTGGCGTGGTGTGGCGTGGTGTGCTCAAT
CGCCGCGAGGGCGGGCTAAGCGGCTCTCAGCGTTTCTCTCGGACTCTGTA
GCAACTGGCTTCACTGCTGTAAGCGCGCTGGAGAACGCGCTAAACGAGCT
AGCTACTTAGCGTGGCTTGGCTTGGCTTGGCTTGTCTAGGCTGGAGTTGA
GTTCCTGCTGTACCAACCAAGGCCAGCAGCAGCAGCAGCAGCAGTAGCCG
GGTCTGTCGTGGAGCTTTTTGTTGTTGTTTTGTTCGCCACGAGTCCCTTG
CCCCCTTTTGGCTCGTACACACAGCAGTACGTCCCTCCAGACCAGCACAG
CGCTCCAGCTAGCCCTCGCCGAGTCGAGTCGAGTCGAATTGGTATGGTGT
GCTTGTCCCCGAATCAGGGGCGGTGGATGCCATAGGTAGTGCGGGGTAGT
GAGCACTCGTATTTACTGTTGATCTCCATGGGGTTCTGGGCACCTGCGGA
CCTCAGTCCAGACCGGAATATGTTTATGCCTTGCCTTGCCCTGCGAAGCA
CGCAGTGTCGGGGTGCCTGTTGCTCTTAGTCGTTAAGTCTGAGCCAGGTC
GCTTTTGTGCTCTAGCTGTTCAACTTCCTGCGAACACTTGAGGGCCGCAC
ATGTAGCGCTCGTTGGTCTCAGTTCCTCCCGCGTGGTGGATCGTTCGCTT
GCGCTGTGAGTGTCGATACAACACCACACAACACTGCCAGCGTGCTGCTG
CATAGTCGCATGGGCTCTGCCGAACCGTGCCTATCTATCCTCCGAGGCTT
GGCTGGGCTTGGCAGCACACGCGCCTTTGACGAAGCTTTTGCTGCTTTTC
GTGATGGCACGCAATCATGGCAACCACCCTAGACATTCCACCATTCGCGG
TCGGTGCCTTTCCACAGGTGAAGAAGGAGATGGCGGCGGAGGCAGAGCGG
GATCGGGAGCTGTACGCCCAGCGGGCGGCGTTGGCGGAAGAGGGGCAGGA
ACTCGCGAGAGAGGACCGGAAACAGCTCCAGGTACAACATCGCACGTATA
CACATACTTAACTCATCACGTATTCCCCCGTCTCATTTGCACCTACTCTA
GGGTATCTCCTGCCGCAGCATAGCATAACATAGTATGGCCGAGCATAGGA
TATGAAAGTGGGGTGGTGAGGGCCGCGAACAAGGCTCCATTCCGTTGTCG
ATCTGATTATTATTCCTTCGGCACCCCACTATCGCTTCTTGGTGTCAGCA
TCACCTATCATGCGTGAATCCTCTAGGTTCATATCTAGCAAAGTGGATCA
GTCACAGTCCTCTTCTCTTTGACTGCAGCGTCAGGGACCGGGTCCAAGCT
CTGCCTCTCCGTTGCCTTTGGTCTGCATGCGAGGCCAGTAGGGCATGTTT
TTCAACGACTCGCTTGTATGAGTCCATGCCTGCCCCCGTATTCTTCGCTT
GGATTTATTCGCTCCCCACTGCTAAGATAAAAGAGCTGGCAAGCGCCGTC
GCGGAACCAACTTCAGGTGGAAGGGGTTTTTGCCTTATTTATGATATTGT
TGTTTTCTCCTGAACCGAAAAACACCAGTTGCACCATGGAGCAAAAAAAC
CAGTGCCGTAACCACTTCCAATCTGTTGCGGTGCTCAGTTTCTAAATCCC
ATATGTTGTACCTCCCGCGTGCCTTACAGGCGGAGAAGGACGCCCTTGCT
CGGCAGCTGCAGGAGACAGTGGAGATGGAAGACGCCAACCGCAGGAAGAT
AATCATCAAATTCAAGGCCAGGTGAGGGATAGTGATGTGGTCATGTGATC
ATCTCAAGCAGCTTCTGGCACGATGACACGGTGGTTCATGGACTCGTCGT
GTATCGGTGCGGGGTTGGCGTGAAGTGCCCCTCGTGATCAGTCTGTTTGG
CTCTTATCTTCTCCGAAGATTTTATCGGTCGCGTTTATTAGGTGGTACGT
GTGAGCGCATGTTTCCAGCGGTGGCAAAATACGTAAGACTCCACAACGTT
ACTATATACCTTTACATAGTAGCCTCCCACTGGGTGTTGAGGTAATGGGA
AGCAAGCTGCGTCTAAGGTTGGCGTTACTGTAGCTGCAGCATAGCCGTTT
CGCTCACGTCTCCATGCATCCGACACTGTAGGGTTAGGATCCGCATCCGT
GGTCGAGAATCAAATCAAACAAACCCAGTCAGTAACGCAGAAGAAATGAT
CCAATGATTAAATGATGGCATGCCAGGGAAAACGCTCTCCGGCAAAACTT
CGAAGCTCGGTTGAGAGAGGTCGCGGGGGCAGGGGGCGAGACGCCCACGT
CAACTTCGATGCCGGAAGAGAGAGAGAAGGCGGCCGCCAACGCCAATCGC
CCACGAGTGACGAAAACCAAGTTGCCGAGCTCTGCAAGCACGAACAGCTC
TTCTGCCAGGGAGGCCCACCGAGCTGCCGTCAGGTCTTCGGTGCCATCTG
GTGTAGGAGCGCCATCGAGCGGCTTCCAGGCCAGCGCGGGGCCTACCGCA
CAACGTTGACGCATGTTTGCACACTTCTCTAGCACCAAGTATCGCAAGGT
TTTGTGCGGTGTAAGCTTAGTTTTCTGATGCGGCGTGGGCGTGGTGAGAG
CGACAAAGTAGCACCGCGGCGCTCATCTTTTGTTTTTTTGTGTTGAGCTC
GCCGGAACAGTAGTGCTGCTGCAGGTGGGTCACCATGAGAGTCGTGTCTC
GTTGTATGGAGTCGGATTGTCAGTTAGAACGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig562:21142..25775+

>mRNA_L-elsbetiae_contig562.13957.1 ID=mRNA_L-elsbetiae_contig562.13957.1|Name=mRNA_L-elsbetiae_contig562.13957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1920bp|location=Sequence derived from alignment at L-elsbetiae_contig562:21142..25775+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAGAGCGAACGGGATTGTCCTATGGGTGATAACTGCTTCCTCCAT
CAGCACCACAACGCTGCAGGCTCGCCGTACCGATCGATCAATCTTGGGCA
AGAAAATATCCCCAGAGGATGTCGTTAGGGTTCAGGACGCCCGGCTGGAG
CGCCTCCAAAAGAGAATTGCCTCGATGAGATGGTGAGAGCGAACGGGATT
GTCCTATGGGTGATAACTGCTTCCTCCATCAGCACCACAACGCTGCAGGC
TCGCCGTACCGATCGATCAATCTTGGGCAAGAAAATATCCCCAGAGGATG
TCGTTAGGGTTCAGGACGCCCGGCTGGAGCGCCTCCAAAAGAGAATTGCC
TCGATGAGCATGGAGGGGGCTATCCTGGCGGAGCGTACAAGGCAACACCG
CGAGATGAGGCTCAAGGGCAACGCGGAGCTGAAAGACAAAGTGGAAGAGT
TGAAACTTAAGCTGCGGACCGAGAGAGAGCGTATGCAGAAGGACTTTGAG
GACCAGCATGGAGGGGGCTATCCTGGCGGAGCGTACAAGGCAACACCGCG
AGATGAGGCTCAAGGGCAACGCGGAGCTGAAAGACAAAGTGGAAGAGTTG
AAACTTAAGCTGCGGACCGAGAGAGAGCGTATGCAGAAGGACTTTGAGGA
CCAGCTGATGGGTGTCCGAGAGGAAATGTGGGCGCAGGCGGCCCGAGACC
GGGATGCCTTGGAGGCGGAGCTGGGGTTGAGGCACGAGGAGGAACGGTCC
AGGTTTTTGGAGGAGGCTAATGAACGCGCCAGCGAGATTGTAGAGGAGCT
GATGGGTGTCCGAGAGGAAATGTGGGCGCAGGCGGCCCGAGACCGGGATG
CCTTGGAGGCGGAGCTGGGGTTGAGGCACGAGGAGGAACGGTCCAGGTTT
TTGGAGGAGGCTAATGAACGCGCCAGCGAGATTGTAGAGGAGGTGAAGAA
GGAGATGGCGGCGGAGGCAGAGCGGGATCGGGAGCTGTACGCCCAGCGGG
CGGCGTTGGCGGAAGAGGGGCAGGAACTCGCGAGAGAGGACCGGAAACAG
CTCCAGGTGAAGAAGGAGATGGCGGCGGAGGCAGAGCGGGATCGGGAGCT
GTACGCCCAGCGGGCGGCGTTGGCGGAAGAGGGGCAGGAACTCGCGAGAG
AGGACCGGAAACAGCTCCAGGCGGAGAAGGACGCCCTTGCTCGGCAGCTG
CAGGAGACAGTGGAGATGGAAGACGCCAACCGCAGGAAGATAATCATCAA
ATTCAAGGCCAGGCGGAGAAGGACGCCCTTGCTCGGCAGCTGCAGGAGAC
AGTGGAGATGGAAGACGCCAACCGCAGGAAGATAATCATCAAATTCAAGG
CCAGGGAAAACGCTCTCCGGCAAAACTTCGAAGCTCGGTTGAGAGAGGTC
GCGGGGGCAGGGGGCGAGACGCCCACGTCAACTTCGATGCCGGAAGAGAG
AGAGAAGGCGGCCGCCAACGCCAATCGCCCACGAGTGACGAAAACCAAGT
TGCCGAGCTCTGCAAGCACGAACAGCTCTTCTGCCAGGGAGGCCCACCGA
GCTGCCGTCAGGTCTTCGGTGCCATCTGGTGTAGGAGCGCCATCGAGCGG
CTTCCAGGCCAGCGCGGGGCCTACCGCACAACGTTGAGGAAAACGCTCTC
CGGCAAAACTTCGAAGCTCGGTTGAGAGAGGTCGCGGGGGCAGGGGGCGA
GACGCCCACGTCAACTTCGATGCCGGAAGAGAGAGAGAAGGCGGCCGCCA
ACGCCAATCGCCCACGAGTGACGAAAACCAAGTTGCCGAGCTCTGCAAGC
ACGAACAGCTCTTCTGCCAGGGAGGCCCACCGAGCTGCCGTCAGGTCTTC
GGTGCCATCTGGTGTAGGAGCGCCATCGAGCGGCTTCCAGGCCAGCGCGG
GGCCTACCGCACAACGTTGA
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