mRNA_L-elsbetiae_contig562.13953.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig562.13953.1
Unique NamemRNA_L-elsbetiae_contig562.13953.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig562.13953.1 vs. uniprot
Match: D8LR76_ECTSI (SET domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR76_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 2.210e-47
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 RRCLITVEMGKALPVGQAVLTSGVSFDAPKHIFLMLFILTDMRRPDTFFRPYYDLLPTTLGNMPIFWTEDEMKLLQGSYLVTQARER 261
            RRCL+TVEMGKALPVGQAVL SGVSFDAPKHIFLMLFILTDMRRPDTFFRPYYDLLPTTL NMPIFWTE+EM+LLQGSYLVTQ  ER
Sbjct:  149 RRCLVTVEMGKALPVGQAVLASGVSFDAPKHIFLMLFILTDMRRPDTFFRPYYDLLPTTLSNMPIFWTEEEMRLLQGSYLVTQVEER 235
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BLAST of mRNA_L-elsbetiae_contig562.13953.1 vs. uniprot
Match: W7THN2_9STRA (Set domain containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THN2_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.060e-33
Identity = 57/87 (65.52%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:    4 RCLITVEMGKALPVGQAVLTSGVSFDAPKHIFLMLFILTDMRRPDTFFRPYYDLLPTTLGNMPIFWTEDEMKLLQGSYLVTQARERR 264
            RCLITVEMGK   VG+AVL S +  DAPKHIFLMLF+LTD R P +FF+PYYD+LP++L NMPIFWT++E+  L+GS+L+TQ  ER+
Sbjct:   69 RCLITVEMGKESDVGKAVLASNLPLDAPKHIFLMLFMLTDRRNPSSFFKPYYDILPSSLSNMPIFWTDEELAYLKGSHLLTQIEERK 155
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BLAST of mRNA_L-elsbetiae_contig562.13953.1 vs. uniprot
Match: A0A7S2FNW3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FNW3_9STRA)

HSP 1 Score: 118 bits (295), Expect = 8.080e-32
Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:    7 CLITVEMGKALPVGQAVLTSGVSFDAPKHIFLMLFILTDMRRPDTFFRPYYDLLPTTLGNMPIFWTEDEMKLLQGSYLVTQARER 261
            CLITVEMGKA  +G+AVL S +  DAPKH+FLMLF+L D + P + F+PYYD LP TL NMPIFW+++E+ LL+GSYL+ Q  ER
Sbjct:   50 CLITVEMGKATDIGRAVLQSDLDLDAPKHVFLMLFMLIDRKNPTSHFKPYYDTLPPTLSNMPIFWSQEELALLEGSYLLVQVEER 134
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BLAST of mRNA_L-elsbetiae_contig562.13953.1 vs. uniprot
Match: A0A6V1NVS5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NVS5_HETAK)

HSP 1 Score: 124 bits (310), Expect = 1.340e-31
Identity = 56/86 (65.12%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    7 CLITVEMGKALPVGQAVLTSGVSFDAPKHIFLMLFILTDMRRPDTFFRPYYDLLPTTLGNMPIFWTEDEMKLLQGSYLVTQARERR 264
            CLITVEMGK   VGQAVL + +  DAPKH+FLMLF+L D + PD+FF+PYYD LP TL NMPIFW+E+E++ L GSYL TQ  +RR
Sbjct:   49 CLITVEMGKQTEVGQAVLAANLDLDAPKHVFLMLFMLVDRKNPDSFFKPYYDTLPPTLSNMPIFWSEEELRWLDGSYLQTQVEDRR 134
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BLAST of mRNA_L-elsbetiae_contig562.13953.1 vs. uniprot
Match: A0A4D9D3E6_9STRA (SET domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3E6_9STRA)

HSP 1 Score: 123 bits (308), Expect = 5.130e-31
Identity = 56/87 (64.37%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:    4 RCLITVEMGKALPVGQAVLTSGVSFDAPKHIFLMLFILTDMRRPDTFFRPYYDLLPTTLGNMPIFWTEDEMKLLQGSYLVTQARERR 264
            RCLITVEMGK   VG+AVL S +  DAPKHIFLMLF+LTD R P +FF+PYYD+LP++L NMPIFWT++E+  L+GS+L+ Q  ER+
Sbjct:   69 RCLITVEMGKESDVGKAVLASNLPLDAPKHIFLMLFMLTDRRNPSSFFKPYYDILPSSLSNMPIFWTDEELAYLKGSHLLVQIEERK 155
[Close]
BLAST of mRNA_L-elsbetiae_contig562.13953.1 vs. uniprot
Match: A0A7S2WKZ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKZ7_9STRA)

HSP 1 Score: 121 bits (304), Expect = 6.080e-31
Identity = 55/85 (64.71%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:    7 CLITVEMGKALPVGQAVLTSGVSFDAPKHIFLMLFILTDMRRPDTFFRPYYDLLPTTLGNMPIFWTEDEMKLLQGSYLVTQARER 261
            CLITVEMGKA  VG AVL + +  DAPKH+FLMLF+L D +R D+ F+PYYD+LP TL NMPIFW  +E+ LL+GSYL+TQ  ER
Sbjct:   89 CLITVEMGKATDVGAAVLAANIELDAPKHVFLMLFMLVDRKREDSHFKPYYDILPETLSNMPIFWNSEELALLEGSYLLTQIEER 173
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BLAST of mRNA_L-elsbetiae_contig562.13953.1 vs. uniprot
Match: F0YNA7_AURAN (SET domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNA7_AURAN)

HSP 1 Score: 120 bits (302), Expect = 8.470e-31
Identity = 56/87 (64.37%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:    4 RCLITVEMGKALPVGQAVLTSGVSFDAPKHIFLMLFILTDMRRPDTFFRPYYDLLPTTLGNMPIFWTEDEMKLLQGSYLVTQARERR 264
            +CLITVEMGKA  VG+AVL + +  DAPKH+FLMLF+L D R   TFF PYYD+LP+TL NMPIFW  DE++ L+GSYL+TQ  ER+
Sbjct:   79 KCLITVEMGKATDVGRAVLEAELELDAPKHVFLMLFVLLDRRDSSTFFAPYYDILPSTLSNMPIFWQPDELEWLKGSYLLTQIEERK 165
[Close]
BLAST of mRNA_L-elsbetiae_contig562.13953.1 vs. uniprot
Match: A0A8J2SJU3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJU3_9STRA)

HSP 1 Score: 117 bits (293), Expect = 4.830e-29
Identity = 55/87 (63.22%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    4 RCLITVEMGKALPVGQAVLTSGVSFDAPKHIFLMLFILTDMRRPDTFFRPYYDLLPTTLGNMPIFWTEDEMKLLQGSYLVTQARERR 264
            +CLITVEMGKA  VG+AVL +G+  DAPKHIFLMLF+L D    D+FFRPYYD+LP +L NMPIFW  +E+  L+GSYL+ Q  ER+
Sbjct:   79 KCLITVEMGKATDVGRAVLEAGLELDAPKHIFLMLFLLLDRCNSDSFFRPYYDVLPGSLSNMPIFWKPNELTWLEGSYLLVQIEERK 165
[Close]
BLAST of mRNA_L-elsbetiae_contig562.13953.1 vs. uniprot
Match: A0A7R9UGQ6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGQ6_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.290e-28
Identity = 49/86 (56.98%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    7 CLITVEMGKALPVGQAVLTSGVSFDAPKHIFLMLFILTDMRRPDTFFRPYYDLLPTTLGNMPIFWTEDEMKLLQGSYLVTQARERR 264
            CLITVEMGK   +G+ +L + +  DAPKH+FLMLF+LTDMR   +FF+PYYD+LP  + NMPIFWT+DE++ L+GSY++ Q  +R+
Sbjct:   77 CLITVEMGKDTEIGRKILDARLDLDAPKHVFLMLFMLTDMRNESSFFKPYYDILPQKMSNMPIFWTDDELRYLEGSYMLQQIADRK 162
[Close]
BLAST of mRNA_L-elsbetiae_contig562.13953.1 vs. uniprot
Match: A0A835ZC89_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC89_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.960e-28
Identity = 51/87 (58.62%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    4 RCLITVEMGKALPVGQAVLTSGVSFDAPKHIFLMLFILTDMRRPDTFFRPYYDLLPTTLGNMPIFWTEDEMKLLQGSYLVTQARERR 264
            +CLITVEMGK  PVG+AV+ +    DAPKHI+LMLF+LTD  R D+FFRPYYD+LP +L NMP+FW + ++  L+GS++V Q  +RR
Sbjct:   87 KCLITVEMGKETPVGRAVVAADPDLDAPKHIYLMLFLLTDRLRADSFFRPYYDMLPPSLSNMPVFWEDAKLAWLRGSFMVRQVADRR 173
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig562.13953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR76_ECTSI2.210e-4791.95SET domain-containing protein n=2 Tax=Ectocarpus T... [more]
W7THN2_9STRA3.060e-3365.52Set domain containing protein n=1 Tax=Nannochlorop... [more]
A0A7S2FNW3_9STRA8.080e-3262.35Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A6V1NVS5_HETAK1.340e-3165.12Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A4D9D3E6_9STRA5.130e-3164.37SET domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S2WKZ7_9STRA6.080e-3164.71Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
F0YNA7_AURAN8.470e-3164.37SET domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A8J2SJU3_9STRA4.830e-2963.22Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9UGQ6_9STRA2.290e-2856.98Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835ZC89_9STRA2.960e-2858.62SET domain-containing protein n=1 Tax=Tribonema mi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig562contigL-elsbetiae_contig562:369..632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue3.7e-35
Seed eggNOG ortholog2880.D8LR76
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-lysine monomethylation
EggNOG OGsKOG1337@1,KOG1337@2759
Ec32 ortholog descriptionSET domain and Rubisco LSMT substrate-binding domain protein
Ec32 orthologEc-06_004080.1
EC2.1.1.43
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons1
Model size264
Cds size240
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816596.847084-UTR-L-elsbetiae_contig562:368..3921622816596.847084-UTR-L-elsbetiae_contig562:368..392Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig562 369..392 +
1691683673.514573-UTR-L-elsbetiae_contig562:368..3921691683673.514573-UTR-L-elsbetiae_contig562:368..392Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig562 369..392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816596.860912-CDS-L-elsbetiae_contig562:392..6321622816596.860912-CDS-L-elsbetiae_contig562:392..632Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig562 393..632 +
1691683673.528634-CDS-L-elsbetiae_contig562:392..6321691683673.528634-CDS-L-elsbetiae_contig562:392..632Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig562 393..632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig562.13953.1prot_L-elsbetiae_contig562.13953.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig562 393..632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig562.13953.1

>prot_L-elsbetiae_contig562.13953.1 ID=prot_L-elsbetiae_contig562.13953.1|Name=mRNA_L-elsbetiae_contig562.13953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
MGKALPVGQAVLTSGVSFDAPKHIFLMLFILTDMRRPDTFFRPYYDLLPT
TLGNMPIFWTEDEMKLLQGSYLVTQARERR
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mRNA from alignment at L-elsbetiae_contig562:369..632+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig562.13953.1 ID=mRNA_L-elsbetiae_contig562.13953.1|Name=mRNA_L-elsbetiae_contig562.13953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=264bp|location=Sequence derived from alignment at L-elsbetiae_contig562:369..632+ (Laminarionema elsbetiae ELsaHSoW15)
CGAAGATGCCTCATCACGGTAGAGATGGGAAAGGCGCTCCCGGTGGGCCA
GGCGGTGCTGACGTCGGGGGTATCGTTCGACGCGCCCAAGCACATCTTCC
TGATGCTCTTCATCCTCACCGACATGAGAAGGCCCGACACCTTCTTCCGC
CCGTACTACGACCTCCTGCCCACCACCCTGGGCAACATGCCCATCTTCTG
GACAGAGGACGAGATGAAGCTGCTCCAGGGGTCCTACCTTGTCACACAGG
CAAGAGAAAGACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig562:369..632+

>mRNA_L-elsbetiae_contig562.13953.1 ID=mRNA_L-elsbetiae_contig562.13953.1|Name=mRNA_L-elsbetiae_contig562.13953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig562:369..632+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAAAGGCGCTCCCGGTGGGCCAGGCGGTGCTGACGTCGGGGGTATC
GTTCGACGCGCCCAAGCACATCTTCCTGATGCTCTTCATCCTCACCGACA
TGAGAAGGCCCGACACCTTCTTCCGCCCGTACTACGACCTCCTGCCCACC
ACCCTGGGCAACATGCCCATCTTCTGGACAGAGGACGAGATGAAGCTGCT
CCAGGGGTCCTACCTTGTCACACAGGCAAGAGAAAGACGGATGGGAAAGG
CGCTCCCGGTGGGCCAGGCGGTGCTGACGTCGGGGGTATCGTTCGACGCG
CCCAAGCACATCTTCCTGATGCTCTTCATCCTCACCGACATGAGAAGGCC
CGACACCTTCTTCCGCCCGTACTACGACCTCCTGCCCACCACCCTGGGCA
ACATGCCCATCTTCTGGACAGAGGACGAGATGAAGCTGCTCCAGGGGTCC
TACCTTGTCACACAGGCAAGAGAAAGACGG
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