mRNA_L-elsbetiae_contig5596.13914.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5596.13914.1
Unique NamemRNA_L-elsbetiae_contig5596.13914.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5596.13914.1 vs. uniprot
Match: D7FNH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH0_ECTSI)

HSP 1 Score: 504 bits (1299), Expect = 1.200e-174
Identity = 255/280 (91.07%), Postives = 267/280 (95.36%), Query Frame = 1 
Query:    1 QGASGITAAQLGKSAAGLAKPSPLKTLEEGVPRAKALAQLEQEIEDLNVMHKFDRRLERLAMVMPLTDHFDPGVTHFAHEHLQEGDKISLPASIISELIRKEAEIPWQFELKLVRRKAPGKFEPVDVPAPSREALTGKVEMPQLSAVACSVLDARSPEQFVFIPDWMMKALRLRPRDIVLYRHKDLTKASTIVLQPHSSAFIKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDTDGKSQETVCVQDSDVATDFKAALDTPEGRRKPRA 840
            +GA GITAAQLGKSAAG+A PSPLKTLEEG+PRA ALAQLEQEIEDLNVMHKFDRRLERLAMVMPLTD FDPGVTHFAHEHLQEGDKIS+PASI+SEL+RK+AEIPWQFELKLVRRK PGKFEPVDVPAP R ALTG+ EMPQLSAVACS+LDARSPEQFVF+PDWMMKALRLRPRDIVLYRHKDLTKAS IVLQPHSSAF+KMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECID DGKSQE VCVQDSDVATDF+AALDTP GRRKP A
Sbjct:   24 KGAGGITAAQLGKSAAGMAGPSPLKTLEEGLPRAVALAQLEQEIEDLNVMHKFDRRLERLAMVMPLTDQFDPGVTHFAHEHLQEGDKISMPASILSELMRKQAEIPWQFELKLVRRKGPGKFEPVDVPAPPRAALTGRAEMPQLSAVACSILDARSPEQFVFMPDWMMKALRLRPRDIVLYRHKDLTKASKIVLQPHSSAFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDADGKSQEAVCVQDSDVATDFQAALDTPAGRRKPGA 303
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BLAST of mRNA_L-elsbetiae_contig5596.13914.1 vs. uniprot
Match: A0A835Z4C9_9STRA (Ubiquitin fusion degradation protein UFD1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C9_9STRA)

HSP 1 Score: 248 bits (633), Expect = 1.000e-73
Identity = 123/257 (47.86%), Postives = 177/257 (68.87%), Query Frame = 1 
Query:  109 LAQLEQEIEDLNVMHKFDRRLERLAMVMPLTDHFDPGVTHFAHEHLQEGDKISLPASIISELIRKEAEIPWQFELKLVRRKAPGKFEPVDVPAPSREALTGKVEMPQLSAVACSVLDARSPEQFVFIPDWMMKALRLRPRDIVLYRHKDLTKASTIV-LQPHSSAFIKMSNHQAVMETELRHYSAITRGTTVAFRYR----------------------KTLYKFNVLECIDTDGKSQETVCVQDSDVATDFKAALD 810
            LA+LEQE+ED+NVM+K+DR+++RL +VMPLTD F+P V  F H HLQ  D++SLP S++ E+  ++ E PWQFE++ V R+ PG + PV++  P+R+ L G+ EMPQLS V CS LDAR+PEQ++FIPDWMMK+LRL+PRDIV  R+K+L +++  V LQ HS +    +   AV+E ELRHYS++T GTT++F +                       +   K NV++C+D  G++ E+VC+QD+DV TD+   LD
Sbjct:   97 LAELEQELEDINVMNKYDRKMDRLLLVMPLTDSFEPAVGQFGHGHLQTSDRVSLPQSVLKEVQHRKLEFPWQFEIQRVHRRGPGDYLPVELSMPTRDDLAGRTEMPQLSRVTCSPLDARAPEQYIFIPDWMMKSLRLKPRDIVQLRYKNLPQSTGCVHLQAHSES---AATSHAVLEEELRHYSSLTAGTTISFVFNPQGAELGGAKGAKGKAKKGVGARREVKINVVQCVDAGGRAVESVCIQDADVGTDWLKPLD 350
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BLAST of mRNA_L-elsbetiae_contig5596.13914.1 vs. uniprot
Match: A0A7S2UZC1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZC1_9STRA)

HSP 1 Score: 222 bits (565), Expect = 1.100e-64
Identity = 127/290 (43.79%), Postives = 180/290 (62.07%), Query Frame = 1 
Query:    4 GASGITAAQLGKSAAGLAKPSPLKTLEEGVPRAKALAQLEQEIEDLNVMHKFDRRLERLAMVMPLTDHFDPGVTHFAHEHLQEGDKISLPASIISELIRKEAEIPWQFELKLVRRKAP-GKFEPVD-------------VPAPSREALTGKVEMPQLSAVACSVLDARSPEQFVFIPDWMMKALRLRPRDIVLYRHKDLTKASTIVLQPHSSAFIKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDTDGKSQETVCVQDSDVATDFKAALDTPEGRRK 831
            GA+ IT AQ   +A   A       L     RA  LA++EQE+ED N M K DR L+R  +VMPLT  FDP V + AH H+Q GDKIS+P S+   ++++  E PWQFE++++ R     + +P D                      T K++ P L  + CS+LD R+PE ++F+P WMMK+L LRPRD+V  RH  L + +   LQPH S F+K++NH+AV+E+ELRHYS++T G+T+AFRYRK  Y F+V+E + +DGK Q+ +CVQD +VA DF   LD  + ++K
Sbjct:   16 GAALITNAQSSTAAGSQASSLDGNFLMNHFTRALKLAKVEQEVEDFNSMKKLDRSLDRRYIVMPLTRAFDPPVGNIAHNHIQFGDKISMPKSLFKMIMKQHIEPPWQFEIEVINRVGDCEEKDPEDGDXXXXXXXXXXXXXXXXXXLSTSKLQWP-LKKLYCSLLDIRAPENYIFLPGWMMKSLGLRPRDVVRMRHFVLPQGTMAKLQPHHSDFLKLTNHRAVLESELRHYSSLTTGSTIAFRYRKKKYFFDVVEVM-SDGKIQDAICVQDCNVAADFVEPLDVVKKKKK 303
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BLAST of mRNA_L-elsbetiae_contig5596.13914.1 vs. uniprot
Match: A0A6V1UP89_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UP89_HETAK)

HSP 1 Score: 187 bits (476), Expect = 2.500e-51
Identity = 109/278 (39.21%), Postives = 157/278 (56.47%), Query Frame = 1 
Query:   88 GVPRAKAL--AQLEQEIEDLNVMHKFDRRLERLAMVMPLTDHFDPGVTHFAHEHLQEGDKISLPASIISELIRKEAEIPWQFELKLVRRKAPGKFEPVD----------------------------------VPAPSREALTGKVEMPQLSAVACSVLDARSPEQFVFIPDWMMKALRLRPRDIVLYRHKDLTKASTIVLQPHSSAFIKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDTDGKSQETVCVQDSDVATDFKAALDT 813
            G P A+A+  A++EQ +ED N + K D  L R  ++MP+ + FDP    F+  H+Q GDK+S+P SI S + R++   PW FE++++   +P + + +                                       S     G  +  +L  V  S+LD  +PE ++F PDWM+KALRLRPRD+V  R   L K   I L+PHSS F+K+SNHQAVMETEL+HYS +T G TV  +YR T+Y+ +V E + +DGK    +C++D+DVATDF   LDT
Sbjct:   22 GDPFARAVYRAKVEQAVEDHNALSKLDNNLNRRCIIMPMNEGFDPPPGSFSRGHIQMGDKMSIPRSIFSHIQREDIGYPWLFEIEVLH--SPEEQDELKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKSGPKRGGARKKKELQRVYGSILDYAAPENYIFAPDWMLKALRLRPRDVVEVRLAALPKGGLIKLRPHSSDFLKLSNHQAVMETELKHYSCLTEGATVKIKYRDTVYELDVEELL-SDGKPVGALCIEDTDVATDFLPPLDT 296
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BLAST of mRNA_L-elsbetiae_contig5596.13914.1 vs. uniprot
Match: A0A0G4FQT5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FQT5_VITBC)

HSP 1 Score: 187 bits (474), Expect = 1.760e-50
Identity = 99/247 (40.08%), Postives = 149/247 (60.32%), Query Frame = 1 
Query:  121 EQEIEDLNVMHKFDRRLERLAMVMPLTDHFDPGVTHFAHEHLQEGDKISLPASIISELIRKEAEIPWQFELKLVRRKAPGKFEPVDVPAPSR---------------EALTGKVEMPQ--LSAVACSVLDARSPEQFVFIPDWMMKALRLRPRDIVLYRHKDLTKASTIVLQPHSSAFIKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDTDGKSQETVCVQDSDVATDFKAALD 810
            EQ +ED+N++ K + R  R   VMP+++ F+P   HF+H+H+  GDK+S P +I ++L+ +  EIPWQF L+ + RK   K         +                + + G+    +  L  V CS LD R+PE FVF+PDWMM AL L PRD++      L + +T+  QPH+SAF+KMSNHQAV+E ELRHYS++T G+T+  +Y +  +  +V+E + +  ++ + VCVQD DV+TDF A  D
Sbjct:   98 EQLVEDINILEKAEGRHGRFLTVMPISEKFNPPPGHFSHDHVMYGDKVSFPRTISTQLLERNLEIPWQFVLEKIDRKELEKVWGGTATTTTXXXXXXXXXXXXXXXGDRIGGRQRYYKSGLKRVYCSTLDFRAPENFVFVPDWMMAALNLMPRDLLYCEFVRLPEGTTVTFQPHNSAFLKMSNHQAVLERELRHYSSLTAGSTIVIKYNRRNFLIDVVE-VKSGSEAYDGVCVQDCDVSTDFIAPKD 343
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BLAST of mRNA_L-elsbetiae_contig5596.13914.1 vs. uniprot
Match: A0A7S3Q209_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q209_9STRA)

HSP 1 Score: 164 bits (415), Expect = 6.250e-43
Identity = 104/267 (38.95%), Postives = 144/267 (53.93%), Query Frame = 1 
Query:   58 KPSPLKTLEEGVPRAKALAQLEQEIEDLNVMHKFDRRLE-------RLAMVMPLTDHFDPGVTHFAHEHLQEGDKISLPASIISELIRKEAEIPWQFELKLVRRKAPGKFEPVDVPAPSREALTGKVEMPQLSAVACSVLDARSPEQFVFIPDWMMKALRLRPRDIVLYRHKDLTKA-STIVLQPHSSAFIKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDTD-GKSQETVCVQDSDVATDFKAALDTPEGRRK 831
            K  P+K L      A  LA LEQ +ED N         +       R  +V+PL D FDP V  F+H H Q GDK+SLP    S + +  A++PW FE+  V           D     R  L   +E P+LS V    +D RSP+ +VF+P WMM+AL L+PRD+V  +      A S + L+PH+S F+ + NHQAV+ETEL+HYSA+TRG+T+ F Y    Y F+V++   +  G+      VQD D+A +F  A D  +  RK
Sbjct:   42 KSGPVKALMTKWNNANNLAVLEQAVEDYNAEEIVASAPDAASAISYRRLIVLPLDDRFDPPVGVFSHGHTQTGDKMSLPRVFWSAIQKTNADVPWLFEVSRV-----------DGVTGPRVILPPNMEDPKLSKVVGGAIDFRSPDNYVFLPRWMMQALALKPRDVVDVKLIQTVPAGSAVKLRPHASEFVNIGNHQAVLETELKHYSALTRGSTIPFDYLGKRYYFDVVDLRSSPRGEKVPMAKVQDCDIAAEFIRAKDQMKKNRK 297
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BLAST of mRNA_L-elsbetiae_contig5596.13914.1 vs. uniprot
Match: B7GA75_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GA75_PHATC)

HSP 1 Score: 162 bits (409), Expect = 7.390e-42
Identity = 99/254 (38.98%), Postives = 147/254 (57.87%), Query Frame = 1 
Query:   97 RAKALAQLEQEIEDLNVMH------KFDRRLERLAMVMPLTDHFDPGVTHFAHEHLQEGDKISLPASIISELIRKEAEIPWQFELKLVRRKAPGKFEPVDVPAPSREALTGKVEMPQLSAVACSVLDARSPEQFVFIPDWMMKALRLRPRDIVLYRHKDLTKASTIV-LQPHSSAFIK-MSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDTD-GKSQETVCVQDSDVATDFKAALDTPEGRRK 831
            +A  L++LEQ++ED N         +      R  + +PL+D FDP +  F+H+H+Q GDK+SLPA+    +    AE+PW F +K +      + E  D      + +T    + QL  V    LD R+P  ++F+P WMM+AL ++PRDIV     +   A ++  L+PHSS F K ++N QAV+ETELRHYS++T+G+T+AF Y K  Y F+V+E      G+    V VQD D+ATDF  A D  + RR+
Sbjct:   62 KANELSELEQQVEDYNAEWIATSNGQAQSTRHRRLICLPLSDRFDPPMGSFSHKHVQTGDKMSLPANFWQAIQLNHAEVPWLFSVKRIDGVTGERVEFSD-----DDIITPHKPLAQLDKVVGGPLDFRAPACYIFLPWWMMRALGVKPRDIVEVELFETVPAGSLAKLRPHSSDFGKEIANPQAVLETELRHYSSLTQGSTIAFDYNKKRYWFDVVELRSAPRGEKSSMVKVQDCDIATDFLIARDEIQNRRR 310
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BLAST of mRNA_L-elsbetiae_contig5596.13914.1 vs. uniprot
Match: A0A0P0YV10_9STRA (Symbiotic ubiquitin fusion degradation n=1 Tax=Nitzschia sp. IriIs04 TaxID=1444690 RepID=A0A0P0YV10_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.170e-41
Identity = 103/260 (39.62%), Postives = 150/260 (57.69%), Query Frame = 1 
Query:   79 LEEGVPRAKALAQLEQEIEDLNVM------HKFDRRLERLAMVMPLTDHFDPGVTHFAHEHLQEGDKISLPASIISELIRKEAEIPWQFELKLVRRKAPGKFEPVDVPAPSREALTGKVEMPQLSAVACSVLDARSPEQFVFIPDWMMKALRLRPRDIVLYRHKDLTKASTIV-LQPHSSAFIK-MSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDTD-GKSQETVCVQDSDVATDFKAALDTPEGRRK 831
            LEE   +A+ LA LEQEIED N           +   +R  + +PL D FDP +  F+H H+Q GDK+SLP      +   +AE+PW F ++ V  K+ G+ +  +V +   E + G  +   LS V    LD R+P  +VF+P WMM+AL L+PRD+V         A ++  L+PHSS++ K +SN QAV+ETELRHYS++T+G+T+AF Y    Y F+V +      G+    + VQD D+ATDF  A DT   + +
Sbjct:   49 LEERFEQAQKLAALEQEIEDHNAAWVASSSDMAESTSKRRLICLPLDDRFDPPMGVFSHGHVQTGDKMSLPRVFFQAIQANKAEVPWLFTVRRVE-KSTGEGDE-EVVSSYNERVVGPEQAGSLSQVIGGPLDFRAPPNYVFLPHWMMRALGLQPRDVVDVEITFSVPAGSLARLRPHSSSWSKEISNPQAVLETELRHYSSLTKGSTIAFDYNSKRYWFDVEDLRSAPRGERCSAIRVQDCDIATDFLPAKDTKRAKAR 306
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BLAST of mRNA_L-elsbetiae_contig5596.13914.1 vs. uniprot
Match: A0A7S2EXW9_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXW9_TRICV)

HSP 1 Score: 158 bits (399), Expect = 9.520e-41
Identity = 103/254 (40.55%), Postives = 142/254 (55.91%), Query Frame = 1 
Query:   73 KTLEEGVPRAKALAQLEQEIEDLN-----VMHKFDRRLE-RLAMVMPLTDHFDPGVTHFAHEHLQEGDKISLPASIISELIRKEAEIPWQFELKLVRRKAPGKFEPVDVPAPSREALTGKVEMPQLSAVACSVLDARSPEQFVFIPDWMMKALRLRPRDIVLYRHKD-LTKASTIVLQPHSSAFIKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDTD-GKSQETVCVQDSDVATDFKAALD 810
            K +E     A+ LA LEQ +ED N     V       L  R  +V+PL + FDP    F+H H+Q GDK+SLP +  + + + +AE+PW FE+  V     G   P  V  P+R A     E P L  V    +D RSP  +VF+P WMM AL L+PRD+V  R  + +   S + L+PHSS F+K+ NHQAV+ETEL+HYSA+T+G T+ F Y    Y F+V++      G+      VQD D+A +F  A D
Sbjct:   39 KAIEAKWSSARDLALLEQAVEDYNAEIVAVAPDVASALSYRRLIVLPLDERFDPPTGVFSHGHVQTGDKMSLPKNFWAAIAKTKAEVPWLFEVSRVD----GATGPRAV-MPARGA-----EDPGLDKVVGGAIDFRSPSNYVFLPRWMMIALALKPRDVVDVRLVETVPPGSAVKLRPHSSEFVKIGNHQAVLETELKHYSALTKGATIPFDYNNKRYYFDVVDLRSAPRGEKVPMAKVQDCDIAAEFVRAKD 282
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BLAST of mRNA_L-elsbetiae_contig5596.13914.1 vs. uniprot
Match: A0A6U3VNR1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3VNR1_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.170e-40
Identity = 100/254 (39.37%), Postives = 140/254 (55.12%), Query Frame = 1 
Query:   97 RAKALAQLEQEIEDLNVMHK------FDRRLERLAMVMPLTDHFDPGVTHFAHEHLQEGDKISLPASIISELIRKEAEIPWQFELKLVRRKAPGKFEP-VDVPAPSREALTGKVEMPQLSAVACSVLDARSPEQFVFIPDWMMKALRLRPRDIVLYRH-KDLTKASTIVLQPHSSAFIKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDTD-GKSQETVCVQDSDVATDFKAALDTPEGRRK 831
            +AK +A LEQ +ED N  +        D    R A+ +PL D FDP V  F+H H+  GDK+SLP +    +++ +AE+PW FE+  V     G   P V +PA      +       LS      LD RSP  +VF+P WM KAL LRPRD+V  R  K     S + L+PH+SAF  + NHQAV+ETEL+HYSA+T G+T+ F YR   + F+V++      G+      VQD D+A +F    D  + +R+
Sbjct:   65 QAKNIALLEQAVEDHNAEYVATSANGVDAISYRRAIALPLDDRFDPPVGVFSHGHIYTGDKMSLPRNFWDAIMKSKAEVPWLFEVSRVD----GVSSPRVTMPADEHHHKSSAT----LSRAVGGALDFRSPNNYVFLPPWMFKALGLRPRDVVDVRLVKTTPPGSAVKLRPHTSAFTNIGNHQAVLETELKHYSALTLGSTIPFDYRGERFYFDVVDLRSAPRGERVPMAKVQDCDIAAEFVRPKDQMKPKRR 310
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5596.13914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNH0_ECTSI1.200e-17491.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z4C9_9STRA1.000e-7347.86Ubiquitin fusion degradation protein UFD1-domain-c... [more]
A0A7S2UZC1_9STRA1.100e-6443.79Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1UP89_HETAK2.500e-5139.21Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4FQT5_VITBC1.760e-5040.08Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S3Q209_9STRA6.250e-4338.95Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
B7GA75_PHATC7.390e-4238.98Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A0P0YV10_9STRA1.170e-4139.62Symbiotic ubiquitin fusion degradation n=1 Tax=Nit... [more]
A0A7S2EXW9_TRICV9.520e-4140.55Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
A0A6U3VNR1_9STRA1.170e-4039.37Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5596contigL-elsbetiae_contig5596:2515..8358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score434.5
Seed ortholog evalue3.7e-119
Seed eggNOG ortholog2880.D7FNH0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ER-associated misfolded protein catabolic process
EggNOG OGsCOG5140@1,KOG1816@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionUbiquitin fusion degradation protein UFD1
Ec32 orthologEc-01_005490.1
Exons7
Model size1575
Cds size813
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816591.9486198-UTR-L-elsbetiae_contig5596:2514..26401622816591.9486198-UTR-L-elsbetiae_contig5596:2514..2640Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5596 2515..2640 +
1691683669.8705971-UTR-L-elsbetiae_contig5596:2514..26401691683669.8705971-UTR-L-elsbetiae_contig5596:2514..2640Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5596 2515..2640 +
1622816591.9611292-UTR-L-elsbetiae_contig5596:3312..33331622816591.9611292-UTR-L-elsbetiae_contig5596:3312..3333Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5596 3313..3333 +
1691683669.8848743-UTR-L-elsbetiae_contig5596:3312..33331691683669.8848743-UTR-L-elsbetiae_contig5596:3312..3333Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5596 3313..3333 +
1622816592.0482583-UTR-L-elsbetiae_contig5596:7743..83581622816592.0482583-UTR-L-elsbetiae_contig5596:7743..8358Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5596 7744..8358 +
1691683669.9592428-UTR-L-elsbetiae_contig5596:7743..83581691683669.9592428-UTR-L-elsbetiae_contig5596:7743..8358Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5596 7744..8358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816591.9711418-CDS-L-elsbetiae_contig5596:3333..34351622816591.9711418-CDS-L-elsbetiae_contig5596:3333..3435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5596 3334..3435 +
1691683669.896319-CDS-L-elsbetiae_contig5596:3333..34351691683669.896319-CDS-L-elsbetiae_contig5596:3333..3435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5596 3334..3435 +
1622816591.9832535-CDS-L-elsbetiae_contig5596:4065..42151622816591.9832535-CDS-L-elsbetiae_contig5596:4065..4215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5596 4066..4215 +
1691683669.9065-CDS-L-elsbetiae_contig5596:4065..42151691683669.9065-CDS-L-elsbetiae_contig5596:4065..4215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5596 4066..4215 +
1622816591.994839-CDS-L-elsbetiae_contig5596:4988..51161622816591.994839-CDS-L-elsbetiae_contig5596:4988..5116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5596 4989..5116 +
1691683669.9159787-CDS-L-elsbetiae_contig5596:4988..51161691683669.9159787-CDS-L-elsbetiae_contig5596:4988..5116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5596 4989..5116 +
1622816592.0042646-CDS-L-elsbetiae_contig5596:5444..55871622816592.0042646-CDS-L-elsbetiae_contig5596:5444..5587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5596 5445..5587 +
1691683669.9258854-CDS-L-elsbetiae_contig5596:5444..55871691683669.9258854-CDS-L-elsbetiae_contig5596:5444..5587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5596 5445..5587 +
1622816592.019582-CDS-L-elsbetiae_contig5596:6966..70671622816592.019582-CDS-L-elsbetiae_contig5596:6966..7067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5596 6967..7067 +
1691683669.9346023-CDS-L-elsbetiae_contig5596:6966..70671691683669.9346023-CDS-L-elsbetiae_contig5596:6966..7067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5596 6967..7067 +
1622816592.0346682-CDS-L-elsbetiae_contig5596:7554..77431622816592.0346682-CDS-L-elsbetiae_contig5596:7554..7743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5596 7555..7743 +
1691683669.9475806-CDS-L-elsbetiae_contig5596:7554..77431691683669.9475806-CDS-L-elsbetiae_contig5596:7554..7743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5596 7555..7743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5596.13914.1prot_L-elsbetiae_contig5596.13914.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5596 3334..7743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5596.13914.1

>prot_L-elsbetiae_contig5596.13914.1 ID=prot_L-elsbetiae_contig5596.13914.1|Name=mRNA_L-elsbetiae_contig5596.13914.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=271bp
MHKFDRRLERLAMVMPLTDHFDPGVTHFAHEHLQEGDKISLPASIISELI
RKEAEIPWQFELKLVRRKAPGKFEPVDVPAPSREALTGKVEMPQLSAVAC
SVLDARSPEQFVFIPDWMMKALRLRPRDIVLYRHKDLTKASTIVLQPHSS
AFIKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDTDGK
SQETVCVQDSDVATDFKAALDTPEGRRKPRAAASSPTSTKKAPPSKEEDE
ESGSDSEEEEEGGGWGSDEF*
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mRNA from alignment at L-elsbetiae_contig5596:2515..8358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5596.13914.1 ID=mRNA_L-elsbetiae_contig5596.13914.1|Name=mRNA_L-elsbetiae_contig5596.13914.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5844bp|location=Sequence derived from alignment at L-elsbetiae_contig5596:2515..8358+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGGAGCAAGCGGCATCACCGCTGCCCAGCTCGGCAAGTCTGCGGCTGG
GTTGGCCAAGCCGTCGCCACTGAAGACGCTCGAGGAGGGAGTGCCCAGAG
CTAAGGCGTTGGCTCAGCTTGAGCAGGTTAGTTCTGCCTGTCGCCTGCAG
CAAGAAAGCGCGTGTGTACTGCCGCAGGATTTTTGTTTATTTTGGCGTCC
CCGTGTCTGTGTCTTTCATCGGTTGTATGTGTTGTATGCTGTCTTCACAA
TCAAAACCGTTCCGATCTCTCCATCCAGTACCTCTCAATGTCCGTACTTA
TCCAACGCTTGATGCGGTCAATTCCCGTGGTCACAGGCTAACTTATACCC
AAGAAAAGGTACATCGGTTAGGTGCTTTTTTTTTTTAGGTATGCTAAGTG
CAGAGAGATGGCGGTCGAGAACGTATCCACGGTGCTCGACGCTAGGGCGG
TTGTTGGTTTGCTGCTCGCCAACGCATTTGATGGGCCAATCTTGAGCGTG
TAGGCTGTGGGGGCGAACGACACCCCCCCTCCGTCGATGGCGGAACTATT
GGCAATCCACCCGTACGTGCCTCGATCTTTTGTTCCGCTGTCGTCTTGCC
TTGTCGGAGACGAGTTGCGTGGTCGAAGGCAAGCTGCGATGGCTGGCGTG
GCATCGCACTTTATGGAAGGTTTTTCAACAATCGCAACATGCGCAGGCAG
GTAAAGGGTTTGGGGTCCTTTATATTTTACACTTGTTTCTCCTCTCTCAA
CGTGTTTCCTCTTCTTCGTTGTTTTTGTATTGCTTGTCACGCCTGCAGGA
GATAGAGGACCTGAACGTGATGCATAAGTTCGATCGGCGGTTGGAGCGGC
TTGCGATGGTTATGCCGCTTACCGACCACTTCGACCCTGGGGTGACGCAC
TTCGCGCACGAACACCTCCAGGTGGGTGCGTCTTCTCTTGTCATGTCCCA
CACCCAGAGCCTTGCACGGCCCACCTTATTGTCAGGAGTCAGGAGGCATG
CCTGCGCTCTCCTCTCCACACCTGTGTACACGGACACTCCCCACTAGATC
AGCCAGACTTTTTGGTGTGCAGCATATTCCATGTCCCCATTTTTCGGGGG
GTGCGTGTCCGCGTCCTTCTGTTCAGAATAGGTTGGCTAGTGTGCCAGCG
TGTAGGCTTTCTGCAGCAGGGCCCCCACTTCGGAAAAGTGGCACCGTGGG
GATTATGTTCCCCTCTATTTCCTAGATAAATACCCCCCCCCCCCCCCGCT
GCCCCCACAGCTCTTCTCGAGAATTGGGAGCTCTATTGCAGGAAATCTAT
GCTGACTCCTGCCACTCTCCAAATCCGACAATATTTGGGTTCTCGTCCGG
GTATAGGTTAGTATTGTGCATCCTTTGAAAAAAAAGTAACACGTGCAGCA
CCGAGAGGAAAATTGGAGAACATTGAATTAACACGCTGCTAACATCCGAA
TCCGTGTCCTTGTCGCTGCCTTCGTCGTCGGCGTGGGTGTGGTGTTGATG
GAACGATGGCGCTCGCGTGCCGATTGGTGACCGTTGCGTGCGTGCGCACA
GGAGGGAGATAAGATATCGCTGCCGGCGTCGATCATCTCGGAGCTGATTC
GCAAGGAGGCCGAGATCCCGTGGCAGTTCGAGCTCAAGCTGGTGCGGCGG
AAGGCCCCCGGCAAGTTCGAACCGGTTGACGTGCCGGCGCCTTCTCGAGA
GGTGAAGAAAGGGTTTGCAACAAGTAGCATCCTCCGGGTGGGACTCTTGC
AGCTCCTTTTGGCAGTTGAGGTGTTGGGGGGGGGGGGGGGGGGGGGGGGG
GTTTGTTGGGGGGGGGGGTGGGGGCGGAGAAATTGTTGGGCGCCAAAAAA
AAATGTTGGGGGGGGGCGGCCGCGCGGGGNNNNNNNNNAGGGGGGGGGGG
GGGGGGGGGTGGGTGTTGGTGGGGTGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGACTGCTTGTCCTTGGAGAAGGTTGTGAACGCGAACAA
TTTGGTGCCCTAAAACAAATTTGTCCAGGCGTGGCACGCCAAAGCGTGGG
ATGCAATGTTGGCAAGAGTTCGCATGGGCACCCTTCAAGAAGGTGGACAT
GTTCAAAGTGCTCCTCCTAGAGTATCCTACCTTCTTGCCTATTTTGAATA
CTATAACTATAGTAGTCTTCGTGGGTTAGGCGATCTTGTTGGATGTATTC
AAATAAACAGCGGCAAATTATTTGAGGATTGTGGGTAATGGAAGGTCATG
GAACGAGAACGGCAGTGTGCCTGTGTGTTCAGGATCAGCAGTTTTTTTTA
ACGGCAAAAGCCCTCGTATCTTACAGTAAGACAGGCAACCAAACCTTTTA
GCCCCAGGTTGTCATGTTTTGTCGCCGGTGCTTCTTGTAATGCATGTCTC
AAGACCTGCGCTTGCCCCCCTCGCCCCCGCACCGTCCACGTGCATTGTTT
CCGTTCGGGGGGGAATGCAAGCAGGCGTTGACAGGCAAGGTGGAGATGCC
TCAGCTGTCAGCGGTTGCGTGCAGCGTCCTAGACGCACGCTCCCCCGAGC
AGTTCGTTTTCATACCCGACTGGATGATGAAGGCGTTGCGCCTGCGGCCA
AGGTGAACAAAATCGCCACCCCCAATCAGCATGCGACTCGCTATACTCAC
AGATGACGGAGCTACTGCTGTGTGTACATATTTATGCGCGCACGGTTCCT
GCGAGGGGTTGCGTGATTTATTTGCCGCGGGTCAAATCTCTTGTCTAAGC
TGGTGTTGGTTTCCCCGTGACTGGAATCCGTTGGGGGTGATTTTGGCGCC
GCAAAAAGCCCTCTAGAGGAAACTATGTTCTCTTCGGCCCTGCTCGTCTC
ATGAAGTAAGTCTCAAGCGCGTGTATCGCGTGGACCGATGGTTGGCCGCC
CGCCCCACGTGCGTATGTGCTTTTTAACAGAGACATCGTCCTGTACCGGC
ATAAGGACCTCACCAAGGCCAGCACGATCGTCCTGCAGCCCCACTCCAGC
GCGTTCATCAAGATGTCTAACCACCAGGCCGTAATGGAGACGGAGCTGCG
CCACTACTCGGCAATCACCCGGGGTAAGGTTTTCTCTGTCTCGTCTCTCT
CTCTGTGTATGTGTGTGTCTCTCTCTCCGATATACCCTCTTGAGACAATG
CTCGTGCCTTGTGGCTGCGTGCACGCCACCGTTCGCCCCCCGTACAACAA
CACTTGTGAGACATTCGTGTTGACGCCGGTGTGCGTTTCTCCTAGGCTTG
GCAAAGTCCTACATACGTGTGTAGCTTAAAAGATATAGTTGGGTTCTAGC
GGGGTCCTCGAAGCGTGACTCCCGTTACCCGATGACGACAACAACAACAA
CAACAAGCAGTGTTTTCCGTCATCTACGTCTCGAAAGTGCGCGGCGGTTT
CACCCTGCCCCGTCAAGTGCGCCTCCCTAGCACCAAACGCTTCTGCCGGC
ACATTGAGATGTACACAACCTTCCCGACCTACCGTAGGCGACATAAGATA
AGACACGTACAGAAGATAAGACACCCCCCCCAAAAATCTACCACACAATA
CCACACCCTGTGATGCATTTTTTGGGCACATAATAAATGATCATTTCCAC
CGGTGACACAAGATACCACACCCCCTGAAGTTATGCCGCATTTTATTCAC
GGAGCCCCCTTAACACACCGTGTGGTACCGGTGTGTTTTCACGTTTTACA
CGGCGCACACACGAGCATTCTACACGGCTGGTATGCAGACACAGACCAGA
TGAAGGTGGAGGACATAGACAACCCTGCTGAAAATAACGCGGGTGAGATG
GCGTCAGGTACATCTGCGCCGGCGCCTTTACGCTCAAAATCACGTCATTT
TTTTCGAAACACCCCGCCGCCGCCAAGCCAAGCGATGGCCGCACAGCAGA
GTCTGCTGAGACTCGCAGAGCAGAGCCTGATGTTTGGCAGCAGCAATCTG
TTGGCAATAGCGATATCACACCCCTTCAAAGAACTTGTTTGGTAGCAGCA
ATCTGTTGGCATTGATTGTCACAGGGATATCACACCCCTTCTTTACCACA
CCCCCTTGTTTTATCACACCCATTCAAAGAGTTGTTTGGCAGCGGCAATC
GGCTGTCACATATGGTATCACACCCCTTCTTTTATCACACCCCCTTGTTT
TATCACACCCATTCAAAGAGTTGTTTGGCAGCGGCAATCGGCTGTCACAA
ATGGTATCACACCCCTTCTTTATCACACCCCCTTGGTTTTATCACACTCC
CTGAGAGCGGGCTCCACGACGTGCACTCTTATCACACCGGTGACATAAGA
TAAGACACCCCGTACACAATAGCACACCCTGTTTCATAAGTTTTTTAAGC
TCAATTTTGCCATCACAGGGGTGCCTTATCTTACGTCACCTACGGAATTT
TGTTGCCCTTTCTTGGACCCACGGGGTGTTTGCTGCGGAACAAATGCGGC
AGGCACGACGGTGGCGTTTCGGTACCGGAAGACGCTGTACAAGTTTAACG
TGCTGGAGTGCATCGACACCGACGGAAAGTCCCAGGAGACGGTGTGCGTC
CAGGTAAAGGTGTACCCTTTTACGGTGGTGGTGGTGCTGCTGTACTGGAC
GAAGGGGCAGGCGGCTAGTTGATCAGCGCGAGCCGCTGAAGTTTGTTGTT
GCTGTTGCTCTCACACTGTAATAGCTGTGGATTTACCCCGAAAAATACCG
GCTCGTGGTCACAAAAATAGTGCTGCTGGAGCCATCATGAGATCTGAAAA
CACACACACATGCACCGGCCGGACAAAAGAAGATACAGAAAAGACGAAAA
GACCGAAGAGGTGCAGGCTTTAGTGCGGGTGCGGCTGGCTGTGCCCGATG
GTTCACGGGCTCGTTGCATGTATGCACAGGATCTGGTTTGTGGTGCTTCG
GGGGGGGGCCCGAGCCGTGATTTCCACCACTACTGTTCTGGGGGTATTGT
GATCCATTTTTCCGTGTGCTTCCCGCCTCTCTTATGCTCGTAACCCCCGC
CAAAATAATTGTGCATGCCCCATCAACTCCTTGTTCGTAGGACTCGGACG
TAGCAACAGACTTCAAAGCGGCGCTCGACACCCCTGAGGGAAGACGGAAA
CCGAGGGCCGCCGCAAGCTCTCCCACGTCGACCAAAAAAGCACCGCCGTC
CAAGGAAGAGGACGAGGAAAGTGGGAGCGACAGCGAGGAAGAGGAGGAGG
GCGGGGGATGGGGTAGCGATGAGTTCTAAGCGCGCGGTGTTTTCGGGCGC
CAAATTGGGTCTCGGGCGGGGCAAGCTTGTGGTGCTCTATTTCCACCGGC
ATTTCTGATTCATGGTTCGTGACGTTGGTGTAGCATTTGGATGCGTTTTG
CGTCTGTTTCTGCTCTGGTTTCGCGTTTGGGGGCGGGGGCAGCTCGCTGT
TGCACTGACCACGACACGCCTCGTATGCCAGCGTTTGTGTTGTTGGCAAC
CAACTACCGGCGAATCTGACTCCAAAAAGCACGGAGCCGGCCGGCCGCCT
CTCTTGGCAAGAGTAGTACAGGCGGCCAACCCAATTTTTGCCACGCGATG
CTTTCTTCTCCACCGCTGTGTCCCACTATGTACGGCCGGGCGTCGCTCGG
GTCCGAAGAAGTATCCTGTGGACATATGTAGGTGAAGTTGTGCCGTCCTT
TGTTCCAACCCGAAACCGGAAGGTGTGGTGAGAGCTGTGAGGAAATGAAG
CTAGACAGATGTTTTGCACAGATCCGCTGGCGACCCAAGGACTGTAATGC
GAAATCTTGACCCTCTTACAGAGAGTACAGCAGGGATGTTCCGTTCCTGT
AGCCCACATATTTACCCAGACCATTGTGACGTTTTCTTTTCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5596:2515..8358+

>mRNA_L-elsbetiae_contig5596.13914.1 ID=mRNA_L-elsbetiae_contig5596.13914.1|Name=mRNA_L-elsbetiae_contig5596.13914.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1626bp|location=Sequence derived from alignment at L-elsbetiae_contig5596:2515..8358+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATAAGTTCGATCGGCGGTTGGAGCGGCTTGCGATGGTTATGCCGCT
TACCGACCACTTCGACCCTGGGGTGACGCACTTCGCGCACGAACACCTCC
AGATGCATAAGTTCGATCGGCGGTTGGAGCGGCTTGCGATGGTTATGCCG
CTTACCGACCACTTCGACCCTGGGGTGACGCACTTCGCGCACGAACACCT
CCAGGAGGGAGATAAGATATCGCTGCCGGCGTCGATCATCTCGGAGCTGA
TTCGCAAGGAGGCCGAGATCCCGTGGCAGTTCGAGCTCAAGCTGGTGCGG
CGGAAGGCCCCCGGCAAGTTCGAACCGGTTGACGTGCCGGCGCCTTCTCG
AGAGGAGGGAGATAAGATATCGCTGCCGGCGTCGATCATCTCGGAGCTGA
TTCGCAAGGAGGCCGAGATCCCGTGGCAGTTCGAGCTCAAGCTGGTGCGG
CGGAAGGCCCCCGGCAAGTTCGAACCGGTTGACGTGCCGGCGCCTTCTCG
AGAGGCGTTGACAGGCAAGGTGGAGATGCCTCAGCTGTCAGCGGTTGCGT
GCAGCGTCCTAGACGCACGCTCCCCCGAGCAGTTCGTTTTCATACCCGAC
TGGATGATGAAGGCGTTGCGCCTGCGGCCAAGGCGTTGACAGGCAAGGTG
GAGATGCCTCAGCTGTCAGCGGTTGCGTGCAGCGTCCTAGACGCACGCTC
CCCCGAGCAGTTCGTTTTCATACCCGACTGGATGATGAAGGCGTTGCGCC
TGCGGCCAAGAGACATCGTCCTGTACCGGCATAAGGACCTCACCAAGGCC
AGCACGATCGTCCTGCAGCCCCACTCCAGCGCGTTCATCAAGATGTCTAA
CCACCAGGCCGTAATGGAGACGGAGCTGCGCCACTACTCGGCAATCACCC
GGGAGACATCGTCCTGTACCGGCATAAGGACCTCACCAAGGCCAGCACGA
TCGTCCTGCAGCCCCACTCCAGCGCGTTCATCAAGATGTCTAACCACCAG
GCCGTAATGGAGACGGAGCTGCGCCACTACTCGGCAATCACCCGGGGCAC
GACGGTGGCGTTTCGGTACCGGAAGACGCTGTACAAGTTTAACGTGCTGG
AGTGCATCGACACCGACGGAAAGTCCCAGGAGACGGTGTGCGTCCAGGCA
CGACGGTGGCGTTTCGGTACCGGAAGACGCTGTACAAGTTTAACGTGCTG
GAGTGCATCGACACCGACGGAAAGTCCCAGGAGACGGTGTGCGTCCAGGA
CTCGGACGTAGCAACAGACTTCAAAGCGGCGCTCGACACCCCTGAGGGAA
GACGGAAACCGAGGGCCGCCGCAAGCTCTCCCACGTCGACCAAAAAAGCA
CCGCCGTCCAAGGAAGAGGACGAGGAAAGTGGGAGCGACAGCGAGGAAGA
GGAGGAGGGCGGGGGATGGGGTAGCGATGAGTTCTAAGACTCGGACGTAG
CAACAGACTTCAAAGCGGCGCTCGACACCCCTGAGGGAAGACGGAAACCG
AGGGCCGCCGCAAGCTCTCCCACGTCGACCAAAAAAGCACCGCCGTCCAA
GGAAGAGGACGAGGAAAGTGGGAGCGACAGCGAGGAAGAGGAGGAGGGCG
GGGGATGGGGTAGCGATGAGTTCTAA
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