mRNA_L-elsbetiae_contig5582.13899.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5582.13899.1
Unique NamemRNA_L-elsbetiae_contig5582.13899.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5582.13899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5582contigL-elsbetiae_contig5582:2524..3253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816590.6087673-CDS-L-elsbetiae_contig5582:2523..28361622816590.6087673-CDS-L-elsbetiae_contig5582:2523..2836Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5582 2524..2836 -
1691683668.9016101-CDS-L-elsbetiae_contig5582:2523..28361691683668.9016101-CDS-L-elsbetiae_contig5582:2523..2836Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5582 2524..2836 -
1622816590.6236863-CDS-L-elsbetiae_contig5582:3218..32531622816590.6236863-CDS-L-elsbetiae_contig5582:3218..3253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5582 3219..3253 -
1691683668.912212-CDS-L-elsbetiae_contig5582:3218..32531691683668.912212-CDS-L-elsbetiae_contig5582:3218..3253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5582 3219..3253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5582.13899.1prot_L-elsbetiae_contig5582.13899.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5582 2524..3253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5582.13899.1

>prot_L-elsbetiae_contig5582.13899.1 ID=prot_L-elsbetiae_contig5582.13899.1|Name=mRNA_L-elsbetiae_contig5582.13899.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
WGTVDGLTPSARYFARMQGGAPGERPATPVQTSAEKDKFNREALQYLIPR
ARIQERQHQQIQIIDWGEFAKSWNEDVAELERHILMGLHERGAANDVINR
KSANQLQYFWIKSRTD
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mRNA from alignment at L-elsbetiae_contig5582:2524..3253-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5582.13899.1 ID=mRNA_L-elsbetiae_contig5582.13899.1|Name=mRNA_L-elsbetiae_contig5582.13899.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=730bp|location=Sequence derived from alignment at L-elsbetiae_contig5582:2524..3253- (Laminarionema elsbetiae ELsaHSoW15)
TGGGGGACTGTGGACGGGCTCACACCAAGTGCCCGGTATGTGTGAGCGTT
TCTTTCAAAATATGGAGACTTTCGTATTTACCAGTATTTTTCGCTACATG
CAGTATCCCCGCGTTGGATTGAGTTGTGTTTTTTCGTCAACTGAGTGCTT
TACCTCCGTGCCGCCGTTTCAGGTTAAAACCTTCTCAAATTAACATATTC
GGGTGCATGCGTGTCTATTGCATACCCGAGCGGTTACTTGGTTTGGAATT
GTATTTCCATTTCCTCTGCCTTCGTACCCTGTCTCTCCTTCCGTATACAT
CTGCATATTAGCGATGACGCGCATAGCGGTTCGCGTGCTTCTTTTCTGAG
CTGGATGCAGTACTTTTTTTGTTGCGGGTTTCCCAATTTCGTCGTATTGT
TCCCGCTCGACCGGCAGGTACTTCGCCAGGATGCAAGGTGGTGCGCCGGG
CGAGCGCCCTGCCACACCCGTCCAAACGTCGGCGGAGAAGGACAAGTTCA
ACCGCGAAGCGCTTCAGTACCTCATACCCCGAGCACGAATTCAGGAACGT
CAGCACCAGCAAATCCAGATCATCGACTGGGGAGAGTTCGCGAAAAGCTG
GAATGAGGATGTCGCAGAGTTGGAACGGCACATATTGATGGGGCTTCACG
AAAGGGGCGCAGCAAACGACGTCATCAACCGCAAATCTGCCAACCAACTT
CAGTACTTCTGGATTAAATCAAGAACGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5582:2524..3253-

>mRNA_L-elsbetiae_contig5582.13899.1 ID=mRNA_L-elsbetiae_contig5582.13899.1|Name=mRNA_L-elsbetiae_contig5582.13899.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig5582:2524..3253- (Laminarionema elsbetiae ELsaHSoW15)
TGGGGGACTGTGGACGGGCTCACACCAAGTGCCCGTGGGGGACTGTGGAC
GGGCTCACACCAAGTGCCCGGTACTTCGCCAGGATGCAAGGTGGTGCGCC
GGGCGAGCGCCCTGCCACACCCGTCCAAACGTCGGCGGAGAAGGACAAGT
TCAACCGCGAAGCGCTTCAGTACCTCATACCCCGAGCACGAATTCAGGAA
CGTCAGCACCAGCAAATCCAGATCATCGACTGGGGAGAGTTCGCGAAAAG
CTGGAATGAGGATGTCGCAGAGTTGGAACGGCACATATTGATGGGGCTTC
ACGAAAGGGGCGCAGCAAACGACGTCATCAACCGCAAATCTGCCAACCAA
CTTCAGTACTTCTGGATTAAATCAAGAACGGACGTACTTCGCCAGGATGC
AAGGTGGTGCGCCGGGCGAGCGCCCTGCCACACCCGTCCAAACGTCGGCG
GAGAAGGACAAGTTCAACCGCGAAGCGCTTCAGTACCTCATACCCCGAGC
ACGAATTCAGGAACGTCAGCACCAGCAAATCCAGATCATCGACTGGGGAG
AGTTCGCGAAAAGCTGGAATGAGGATGTCGCAGAGTTGGAACGGCACATA
TTGATGGGGCTTCACGAAAGGGGCGCAGCAAACGACGTCATCAACCGCAA
ATCTGCCAACCAACTTCAGTACTTCTGGATTAAATCAAGAACGGAC
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