mRNA_L-elsbetiae_contig5548.13849.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5548.13849.1
Unique NamemRNA_L-elsbetiae_contig5548.13849.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5548.13849.1 vs. uniprot
Match: A0A6H5JX10_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX10_9PHAE)

HSP 1 Score: 293 bits (749), Expect = 6.340e-87
Identity = 154/201 (76.62%), Postives = 171/201 (85.07%), Query Frame = 1 
Query:  199 IYRPIGDDAMEKIGRELSELVIASRPDDCTHLETLLAQIRKKDPERLRIVLRRNTTFAFPQGHFLAAACSNGKVAAADILLRYGVDPNQQCPSGSTALHLACYNGKASCVGLLLGLPGTLRGPMVLAGVRQPCAASPRVTPACGTHALIHACRGANEKAAEEIVDALLRADPSLPVRAAEGALALHAAAASGFPRVLEMLL 801
            +YR IGD+  +KIGRELSELV++SRPDDC+ LE LLAQ  K+ P+RL+ VL RNTTFAFPQGH LAAACSNGKVAAAD+LLRYGV+PN+QCPSGSTAL LACYNG+ +CV LLLGLPG+LRG  V AGV  P  ASPRV PA G +ALIHACR  NEKAAEEIV ALL ADPSLP+ AAEGALALHAAAASGFPRVLE LL
Sbjct:   60 VYRAIGDETTDKIGRELSELVMSSRPDDCSKLEALLAQTHKQHPKRLQTVLHRNTTFAFPQGHMLAAACSNGKVAAADLLLRYGVEPNKQCPSGSTALSLACYNGRTACVKLLLGLPGSLRGTAV-AGVGVPSRASPRVAPAYGANALIHACRCTNEKAAEEIVGALLEADPSLPLEAAEGALALHAAAASGFPRVLERLL 259
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BLAST of mRNA_L-elsbetiae_contig5548.13849.1 vs. uniprot
Match: D8LKA6_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKA6_ECTSI)

HSP 1 Score: 290 bits (742), Expect = 1.850e-86
Identity = 151/201 (75.12%), Postives = 171/201 (85.07%), Query Frame = 1 
Query:  199 IYRPIGDDAMEKIGRELSELVIASRPDDCTHLETLLAQIRKKDPERLRIVLRRNTTFAFPQGHFLAAACSNGKVAAADILLRYGVDPNQQCPSGSTALHLACYNGKASCVGLLLGLPGTLRGPMVLAGVRQPCAASPRVTPACGTHALIHACRGANEKAAEEIVDALLRADPSLPVRAAEGALALHAAAASGFPRVLEMLL 801
            ++R IGD+  +KIGRE+SELV++SRPDDC+ LE LLAQ  K+ P+RL+ VL RNTTF+FPQGH LAAACSNGKVAAAD+LLRYGV+PN+QCPSGSTAL LACYNG+ +CV LLLGLPG+LRGP V AGV  P  ASPRV PA G +ALIHACR  NEKAAEEIV ALL ADPSLP+ AAEGALALHAAA SGFPRVLE LL
Sbjct:   61 VHRAIGDETTDKIGREVSELVMSSRPDDCSKLEALLAQTHKQHPKRLQTVLHRNTTFSFPQGHMLAAACSNGKVAAADLLLRYGVEPNKQCPSGSTALSLACYNGRTACVKLLLGLPGSLRGPAV-AGVGVPSRASPRVAPAYGANALIHACRCTNEKAAEEIVGALLEADPSLPLEAAEGALALHAAAVSGFPRVLERLL 260
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5548.13849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JX10_9PHAE6.340e-8776.62HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LKA6_ECTSI1.850e-8675.12HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5548contigL-elsbetiae_contig5548:4861..7474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.0
Seed ortholog evalue3e-76
Seed eggNOG ortholog2880.D8LKA6
KEGG koko:K10592
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006811,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016032,GO:0016567,GO:0016740,GO:0019058,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0023052,GO:0030163,GO:0030260,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044409,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046718,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051603,GO:0051701,GO:0051704,GO:0051716,GO:0051806,GO:0051828,GO:0055085,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0939@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons4
Model size861
Cds size831
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5548.13849.1prot_L-elsbetiae_contig5548.13849.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5548 4861..7444 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816585.567375-CDS-L-elsbetiae_contig5548:4860..49321622816585.567375-CDS-L-elsbetiae_contig5548:4860..4932Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5548 4861..4932 -
1691683665.3971016-CDS-L-elsbetiae_contig5548:4860..49321691683665.3971016-CDS-L-elsbetiae_contig5548:4860..4932Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5548 4861..4932 -
1622816585.578381-CDS-L-elsbetiae_contig5548:5513..59021622816585.578381-CDS-L-elsbetiae_contig5548:5513..5902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5548 5514..5902 -
1691683665.4213073-CDS-L-elsbetiae_contig5548:5513..59021691683665.4213073-CDS-L-elsbetiae_contig5548:5513..5902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5548 5514..5902 -
1622816585.5892444-CDS-L-elsbetiae_contig5548:6398..65011622816585.5892444-CDS-L-elsbetiae_contig5548:6398..6501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5548 6399..6501 -
1691683665.432807-CDS-L-elsbetiae_contig5548:6398..65011691683665.432807-CDS-L-elsbetiae_contig5548:6398..6501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5548 6399..6501 -
1622816585.6033635-CDS-L-elsbetiae_contig5548:7177..74441622816585.6033635-CDS-L-elsbetiae_contig5548:7177..7444Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5548 7178..7444 -
1691683665.4416566-CDS-L-elsbetiae_contig5548:7177..74441691683665.4416566-CDS-L-elsbetiae_contig5548:7177..7444Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5548 7178..7444 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816585.615716-UTR-L-elsbetiae_contig5548:7444..74741622816585.615716-UTR-L-elsbetiae_contig5548:7444..7474Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5548 7445..7474 -
1691683665.4513814-UTR-L-elsbetiae_contig5548:7444..74741691683665.4513814-UTR-L-elsbetiae_contig5548:7444..7474Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5548 7445..7474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5548.13849.1

>prot_L-elsbetiae_contig5548.13849.1 ID=prot_L-elsbetiae_contig5548.13849.1|Name=mRNA_L-elsbetiae_contig5548.13849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=277bp
MSDNGSHGGGRGGRGGGSTRGGGGGRGNRNNHRRRNNNNHSSRRSAPATI
TTAAETIYRPIGDDAMEKIGRELSELVIASRPDDCTHLETLLAQIRKKDP
ERLRIVLRRNTTFAFPQGHFLAAACSNGKVAAADILLRYGVDPNQQCPSG
STALHLACYNGKASCVGLLLGLPGTLRGPMVLAGVRQPCAASPRVTPACG
THALIHACRGANEKAAEEIVDALLRADPSLPVRAAEGALALHAAAASGFP
RVLEMLLSYEYFPNPSGESPESRRKVQ
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mRNA from alignment at L-elsbetiae_contig5548:4861..7474-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5548.13849.1 ID=mRNA_L-elsbetiae_contig5548.13849.1|Name=mRNA_L-elsbetiae_contig5548.13849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2614bp|location=Sequence derived from alignment at L-elsbetiae_contig5548:4861..7474- (Laminarionema elsbetiae ELsaHSoW15)
GCAGCTGGTGGCCAGTGTCTTTCCGTTGCAATGTCTGACAATGGATCTCA
CGGTGGCGGTCGAGGGGGTAGGGGCGGGGGAAGCACTCGAGGAGGGGGAG
GTGGACGAGGAAACAGAAACAATCACAGGCGCAGAAACAACAACAATCAC
AGCTCGCGTCGATCTGCTCCCGCTACCATCACCACGGCTGCTGAGACCAT
CTACCGACCCATCGGCGACGATGCGATGGAAAAAATCGGGAGGGAGTTAT
CTGAGCTGGTCATCGCCTCGCGCCCGGACGATTGCACCCATCTGGAGGTG
CCGTAATTTTGTGCCATTTGCGTGTCCACGATAGAAAGTTGATGGGCAGG
TGCAAAAACATAATTGCAGCGCCGGTTGATGCCAATAACATACAGCCAAA
CGTCACACACGGCTTGAGTGGGAGAGAAAAAATACCCTTTCGTCTGATGT
TGCAACGTTTGTTCCGTCGTTGTTGTTCGCTTTGCCGACAAGGATATTCC
GTACTCGGTACGCGTTGCACGTAAAGACGTGGTACGCAAACACCAGCATT
GTTGTGGTGTGCGCCCGCTCGCGAGAATTTCGAGCATTTACTCCTATTTC
GAGCTGTTCTTTGGTTTTTTGCGCCGCCCCCACCAGCAGTTGTGTTCGGT
GCTGGTAGCGGTTCTTTCCATGCTGTGATTGCTCCACCAAGCGGCTCAGA
CTTTGATTGCGCAGCTCAAGGCGCACGGACGGTATTCGTAGCGTTTCCTC
CCTCTCTCGCAGGTTAGTCTACCCCCCTTTTAGTTAGCCCGCATGTGTTG
CATGTATCGTATTTAGTCTACGTGCATATGTTCGTACAGACAGCAGTCGT
GAAGAGATGCGTGCAGACGCCCCCACCTCCCTTTCGCGCCCGTGCCTCTT
GAATCCTGTTCGTTCCTGTTTTTATGTTTCCATCCAAACATTACGCTCCT
CATCATGTGCAAAACTGCTGAAGACGCTTCTGGCCCAGATCCGGAAGAAG
GACCCCGAACGGCTGCGGATCGTTCTTAGGCGCAACACGACGTTCGCGTT
CCCGCAAGGACACTTCCTGGCAGCAGGTTCGACGAGGGCCGCTGTTTGGT
TCGTTCTTATAATGTACATACAAGTTTTGCTACAGCAGGATTTGCATCAG
TCATTTTGTTTTTGTTCGCTCACTCACTGCCTGTGAGGGAGTCCTATCTT
TTCGTACGATACGTGGCGTGGCGTGGCGTGGCATGCGCCCCTTCCCGACT
TCTCCACAACGGTTTCAAAGCCAACGAAAGATAGTTGGACCAAGGGTGAC
GGTTCAAGGGGAAGTCTTTACCCGAGAGTTTGCTTGCAACATCGCCATGA
TAGAGGTGTTGGTGGCTTCCGTATCCCGTCTAGTGAAGTCAAGCGGTTAA
GTTCAGGGGGGGGTGGGGGGTGTAGTTGCAAAGGTAGTGCTGGTAGTTCT
AACCCTGGCTAAGTATACGTCCTCTCTCACGCCCCTGTCTCAATACCACC
CCACCCCGTCCCACGCGCGCCAACACAACAACCAAAATCACGGAACGGTT
GGATTCGAATCGAACCGAAAAGCGTGCTCCAACGGCAAGGTCGCCGCGGC
CGACATCCTCCTCCGCTACGGCGTCGACCCCAACCAGCAGTGCCCCTCGG
GCTCCACCGCCCTGCACCTCGCCTGCTACAACGGGAAGGCGAGCTGCGTC
GGGCTCCTGCTGGGCCTCCCGGGCACCCTGCGGGGCCCCATGGTGCTCGC
GGGGGTGCGCCAGCCCTGCGCCGCGAGCCCCAGGGTCACCCCGGCTTGCG
GCACGCACGCCCTGATCCACGCGTGCCGGGGCGCCAACGAGAAGGCGGCG
GAGGAGATCGTGGACGCGCTGCTGAGGGCGGACCCTTCCCTCCCCGTCAG
GGCCGCTGAGGGGGCGCTGGCCCTGCACGCGGCGGCGGCGAGCGGTTTTC
CCCGAGTCCTGGTGGGTGCCCTTGTCCTCAGGGCACTTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTTGGTTTTG
GGTTGCGTCGCGTTGCCTCTTCTTTCGCCGAGGCTTTTTGTTGTTGTTGT
TGTGAAACTTCTCCCTGCGGAGGGACGCGAGGCGGTGCGGGGCGTGGTCT
ATCGTAGTATGTATCCGCCTGTGGTGTCCACGAGCGAAAGGGGTCCCTCG
AGTTTGGGTGTGGAGTCGCGCATTTCGTTGTTCACAAAGCCTCCAGCTCC
TCAGGTTTCCGTTTCCTTAAGTTGCCCCCCCCCCCCCCCCCCCCCCAAAT
GCTAGCGGATCTCCCGGGCCCTTGTATGGCCGTGGCTTTGATAATTGTTG
TGTTGTGATGTACCTACCAGTAATCTTTATCGTGATACTCCTTTCTCTCG
GCCAAGGATGTGCGGAGAACCGAAGAAGTGATCACACCACTCGTGTTTCG
GCTGCTTTGATGGTCTCGTATTTTTCTGTGTGCCGGTGCGGCCGATTTCC
CCTTGTTTCATGCTGTTCCTGCCTTTGTCTGCCTTGTCGCAGGAGATGCT
GCTGTCATACGAGTACTTCCCTAACCCCTCGGGGGAATCGCCTGAGAGCC
GTAGGAAGGTGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5548:4861..7474-

>mRNA_L-elsbetiae_contig5548.13849.1 ID=mRNA_L-elsbetiae_contig5548.13849.1|Name=mRNA_L-elsbetiae_contig5548.13849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1662bp|location=Sequence derived from alignment at L-elsbetiae_contig5548:4861..7474- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGACAATGGATCTCACGGTGGCGGTCGAGGGGGTAGGGGCGGGGG
AAGCACTCGAGGAGGGGGAGGTGGACGAGGAAACAGAAACAATCACAGGC
GCAGAAACAACAACAATCACAGCTCGCGTCGATCTGCTCCCGCTACCATC
ACCACGGCTGCTGAGACCATCTACCGACCCATCGGCGACGATGCGATGGA
AAAAATCGGGAGGGAGTTATCTGAGCTGGTCATCGCCTCGCGCCCGGACG
ATTGCACCCATCTGGAGATGTCTGACAATGGATCTCACGGTGGCGGTCGA
GGGGGTAGGGGCGGGGGAAGCACTCGAGGAGGGGGAGGTGGACGAGGAAA
CAGAAACAATCACAGGCGCAGAAACAACAACAATCACAGCTCGCGTCGAT
CTGCTCCCGCTACCATCACCACGGCTGCTGAGACCATCTACCGACCCATC
GGCGACGATGCGATGGAAAAAATCGGGAGGGAGTTATCTGAGCTGGTCAT
CGCCTCGCGCCCGGACGATTGCACCCATCTGGAGACGCTTCTGGCCCAGA
TCCGGAAGAAGGACCCCGAACGGCTGCGGATCGTTCTTAGGCGCAACACG
ACGTTCGCGTTCCCGCAAGGACACTTCCTGGCAGCAGACGCTTCTGGCCC
AGATCCGGAAGAAGGACCCCGAACGGCTGCGGATCGTTCTTAGGCGCAAC
ACGACGTTCGCGTTCCCGCAAGGACACTTCCTGGCAGCAGCGTGCTCCAA
CGGCAAGGTCGCCGCGGCCGACATCCTCCTCCGCTACGGCGTCGACCCCA
ACCAGCAGTGCCCCTCGGGCTCCACCGCCCTGCACCTCGCCTGCTACAAC
GGGAAGGCGAGCTGCGTCGGGCTCCTGCTGGGCCTCCCGGGCACCCTGCG
GGGCCCCATGGTGCTCGCGGGGGTGCGCCAGCCCTGCGCCGCGAGCCCCA
GGGTCACCCCGGCTTGCGGCACGCACGCCCTGATCCACGCGTGCCGGGGC
GCCAACGAGAAGGCGGCGGAGGAGATCGTGGACGCGCTGCTGAGGGCGGA
CCCTTCCCTCCCCGTCAGGGCCGCTGAGGGGGCGCTGGCCCTGCACGCGG
CGGCGGCGAGCGGTTTTCCCCGAGTCCTGCGTGCTCCAACGGCAAGGTCG
CCGCGGCCGACATCCTCCTCCGCTACGGCGTCGACCCCAACCAGCAGTGC
CCCTCGGGCTCCACCGCCCTGCACCTCGCCTGCTACAACGGGAAGGCGAG
CTGCGTCGGGCTCCTGCTGGGCCTCCCGGGCACCCTGCGGGGCCCCATGG
TGCTCGCGGGGGTGCGCCAGCCCTGCGCCGCGAGCCCCAGGGTCACCCCG
GCTTGCGGCACGCACGCCCTGATCCACGCGTGCCGGGGCGCCAACGAGAA
GGCGGCGGAGGAGATCGTGGACGCGCTGCTGAGGGCGGACCCTTCCCTCC
CCGTCAGGGCCGCTGAGGGGGCGCTGGCCCTGCACGCGGCGGCGGCGAGC
GGTTTTCCCCGAGTCCTGGAGATGCTGCTGTCATACGAGTACTTCCCTAA
CCCCTCGGGGGAATCGCCTGAGAGCCGTAGGAAGGTGCAGGAGATGCTGC
TGTCATACGAGTACTTCCCTAACCCCTCGGGGGAATCGCCTGAGAGCCGT
AGGAAGGTGCAG
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