mRNA_L-elsbetiae_contig5522.13809.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5522.13809.1
Unique NamemRNA_L-elsbetiae_contig5522.13809.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5522.13809.1 vs. uniprot
Match: D8LM49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM49_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 3.880e-52
Identity = 92/121 (76.03%), Postives = 105/121 (86.78%), Query Frame = 2 
Query:  479 SSVESSAITYVMTPRLVQKFVPPSPQYLTAVYRTLTSSFPEFSDRPIEICDYTGTKRAEGAHPGIQALPLEAFLLEVGLREEPSWTFPTVLAPLAARLAAAGIPTTDSLCEAATSGVLLSK 841
            + V SSAITY+M+  LVQ +VPPSPQYLTAVYRTLTSSFPEF DRP+EICDYTG KR++  +PG++ LPLEAFLLEVGLRE+P WTFPTVL PL  RLA+AG+ TTD LCEAATSGVLLSK
Sbjct:   31 NDVASSAITYIMSQHLVQTYVPPSPQYLTAVYRTLTSSFPEFLDRPLEICDYTGGKRSDWTYPGVRGLPLEAFLLEVGLREDPPWTFPTVLKPLTDRLASAGVTTTDELCEAATSGVLLSK 151
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5522.13809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM49_ECTSI3.880e-5276.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5522contigL-elsbetiae_contig5522:5744..10039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGamma-glutamylcyclotransferase
Ec32 orthologEc-06_002460.1
Exons7
Model size1921
Cds size729
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816581.6442695-UTR-L-elsbetiae_contig5522:5743..66251622816581.6442695-UTR-L-elsbetiae_contig5522:5743..6625Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5522 5744..6625 -
1691683662.5319643-UTR-L-elsbetiae_contig5522:5743..66251691683662.5319643-UTR-L-elsbetiae_contig5522:5743..6625Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5522 5744..6625 -
1622816581.727287-UTR-L-elsbetiae_contig5522:9450..95771622816581.727287-UTR-L-elsbetiae_contig5522:9450..9577Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5522 9451..9577 -
1691683662.6080503-UTR-L-elsbetiae_contig5522:9450..95771691683662.6080503-UTR-L-elsbetiae_contig5522:9450..9577Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5522 9451..9577 -
1622816581.7379637-UTR-L-elsbetiae_contig5522:9856..100391622816581.7379637-UTR-L-elsbetiae_contig5522:9856..10039Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5522 9857..10039 -
1691683662.616652-UTR-L-elsbetiae_contig5522:9856..100391691683662.616652-UTR-L-elsbetiae_contig5522:9856..10039Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5522 9857..10039 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816581.6554534-CDS-L-elsbetiae_contig5522:6625..68241622816581.6554534-CDS-L-elsbetiae_contig5522:6625..6824Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5522 6626..6824 -
1691683662.5426545-CDS-L-elsbetiae_contig5522:6625..68241691683662.5426545-CDS-L-elsbetiae_contig5522:6625..6824Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5522 6626..6824 -
1622816581.6715167-CDS-L-elsbetiae_contig5522:7327..74611622816581.6715167-CDS-L-elsbetiae_contig5522:7327..7461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5522 7328..7461 -
1691683662.5559762-CDS-L-elsbetiae_contig5522:7327..74611691683662.5559762-CDS-L-elsbetiae_contig5522:7327..7461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5522 7328..7461 -
1622816581.683656-CDS-L-elsbetiae_contig5522:8001..80681622816581.683656-CDS-L-elsbetiae_contig5522:8001..8068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5522 8002..8068 -
1691683662.5662093-CDS-L-elsbetiae_contig5522:8001..80681691683662.5662093-CDS-L-elsbetiae_contig5522:8001..8068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5522 8002..8068 -
1622816581.6932821-CDS-L-elsbetiae_contig5522:8668..89281622816581.6932821-CDS-L-elsbetiae_contig5522:8668..8928Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5522 8669..8928 -
1691683662.5757957-CDS-L-elsbetiae_contig5522:8668..89281691683662.5757957-CDS-L-elsbetiae_contig5522:8668..8928Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5522 8669..8928 -
1622816581.704565-CDS-L-elsbetiae_contig5522:9145..91991622816581.704565-CDS-L-elsbetiae_contig5522:9145..9199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5522 9146..9199 -
1691683662.5880263-CDS-L-elsbetiae_contig5522:9145..91991691683662.5880263-CDS-L-elsbetiae_contig5522:9145..9199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5522 9146..9199 -
1622816581.7174041-CDS-L-elsbetiae_contig5522:9435..94501622816581.7174041-CDS-L-elsbetiae_contig5522:9435..9450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5522 9436..9450 -
1691683662.5997329-CDS-L-elsbetiae_contig5522:9435..94501691683662.5997329-CDS-L-elsbetiae_contig5522:9435..9450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5522 9436..9450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5522.13809.1prot_L-elsbetiae_contig5522.13809.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5522 6626..9450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5522.13809.1

>prot_L-elsbetiae_contig5522.13809.1 ID=prot_L-elsbetiae_contig5522.13809.1|Name=mRNA_L-elsbetiae_contig5522.13809.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=243bp
MTPQEVEILDMYEHVKQGGYSKEAVKVSVRVAKGTAEDGENGDTATAGDG
TGVAAFSSVESSAITYVMTPRLVQKFVPPSPQYLTAVYRTLTSSFPEFSD
RPIEICDYTGTKRAEGAHPGIQALPLEAFLLEVGLREEPSWTFPTVLAPL
AARLAAAGIPTTDSLCEAATSGVLLSKLAAAAAAAETPAAATAVGQEGGE
EQPKELPKWEDTQRALQARATVPDFTEQTVDIIARIVSGRCS*
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mRNA from alignment at L-elsbetiae_contig5522:5744..10039-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5522.13809.1 ID=mRNA_L-elsbetiae_contig5522.13809.1|Name=mRNA_L-elsbetiae_contig5522.13809.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4296bp|location=Sequence derived from alignment at L-elsbetiae_contig5522:5744..10039- (Laminarionema elsbetiae ELsaHSoW15)
ATCTAGATGTACACCCCGAAAAACACACAACATTTACGTACTACTGTAGA
ACTGAGGGCCAAAACCCCATCACAGCAGCTGGGAGACAGCAGCTGGGAGC
GCTGCTCGTGCCCCACCGCGGAATACAAGGCGCGAAAGGCCTCGCTCTCT
CCTCGTCCAGCCTTCTCTGCCCGCGGAAGAGGGGTACGTAGCGAACATCT
GAGAACCTCAGCAGATTAGTCTAATGCCGTCTTGTCGAAGCGTCAGTCTA
CAAGTGCTGTCGTCTTGCTGTACGTAGCCTATACGTATGATAGAACCCGC
CTGAGATTAGTTGGTCCACTCAGGCTGTCGTTGAAATCACGCCCGCCCGC
CCGCCAAAGATCGACCAATTACAAGTCCACAAATCGATTTGTGCCGTTGA
TGCAGAGCCTCGTGTTTTCCCTATTTCTCTGTCTGCGTGCCCGTGTCACA
AATCGATCGCAGTGGCAGGCCCGCCTCTCTCGACGGCTACGTGCGAGTGT
TTGGCTTCAGCTCCCCACCTTGGGGAAGCGGCAGCGTTGCGTCCGTCGCC
CCGAAAGAGGGAGGGCGCGTCTACGGCCGCTTCTATCTCATGACCCCCCA
AGAGGTTGGTGGGTTCATGTGTGAATTACTACTTCGAAGTACTAAATACT
AGCACAAAGGAACATTCACAGTAGTCACAAGTGCGCATGTGCAACATGGG
AGTCCAGTTGACCCGGACCCACATGCGGTATGTATTGCGGTTGTCGCTCC
GCAGTTTGTGCACGTGCCTCATTGTCTCTATCTCTCGCCTCTGTCTCCCC
ACCCCACCTGTCCCCCAAACACGCACCCGGCGAATGCAAGGTGGAAATCC
TGGACATGTATGAGCACGTGAAGCAGGGGGGCTACTCTAAGGAGGCGAGT
TAGGCGGTTGGCGGGTGGAATCCAGCTGTGCGGCAGGCAGTCTTGGAGGA
GGCAAAGCCCAGGGTGTGCGCCGACTAGATATTCAGTGCGTTGAGATCAA
AGCATCTTCACCGTTGTTGTTGTGGCTGTTGTTGTGGGGGCTGTTGGTGC
GTTGTTGCTCATTTGTTTGTTGATGGGCAATGGTTCTTGTTTGTGATGCC
CGAAAACACAGGCCGTGAAGGTCAGCGTCCGCGTGGCCAAAGGGACCGCC
GAAGACGGCGAAAACGGAGACACCGCCACTGCCGGCGACGGCACCGGCGT
CGCGGCCTTCAGCAGCGTGGAATCGTCGGCCATAACGTACGTCATGACGC
CCCGCCTAGTCCAGAAGTTCGTGCCCCCCTCGCCTCAGTACCTCACGGCC
GTGTACCGGACCCTGACGTCGAGTTTTCCAGAGTTCTCGGACCGCCCGAT
CGAAATCTGTGACTACACCGGTGAGAGGAGGAGAAGCGGGGGGGGCAGTA
CGGGGGAACCGATAAATATATACATACATAAAGGGTCTCGAAGGGTGGAG
TATAAAGGGGGCGGTCATGCGATGGAACGACCAGCCAGGCCGGTGAGGTA
CCTATCGGATGGCATTCGAGCGAACAGAGCACGAGACAGGCACTGCTGAC
TGGCTCGCTTGTCCACGTCTCGTTGTCCTTGGACGCGTGCCGTGCCGCTT
GCGGGACGGACATGCGGCACCAGACCGGCTTCCCAAACCGTCGCCGAGAG
CTGGGCCTCCCTAGATTGTTTCGGCTGTGCACACCACACAAGACAGAGCT
GCCTGTTTTATAAAAATAAACAATGTGAATCAAAGGTGGAACCTAATCCA
CACTAGAGCAAGGACTCGATATGGGGTTCAAACGGTATTCCATACAACCG
TGACGTAATATTTGGCGAAGCGAGCAGAAAAACGCCTGTTGCTGCCGCTT
TCCCACCACGAAAACCAGCATCTCGCCTGTTGGCTGTCTTGTATTTTGTA
TCCGTCCGACTCAACCCCCAACCCCTCTTCCCCCGTCCCCCCCCCTGCCG
ACCTTTATGTTTTGCGTCCGGCACCAAGAGGGCGGAGGGGGCGCACCCTG
GGATTCAAGCCCTACCGCTCGAGGCATTTTTGCTAGAGGTGCACTTAGCG
TGGCTCGCGCGCCGCCGTGGTTCCACGTGTTTTTACCATTACTCATCTCT
GGCGAAACGGACACAATGGTAGTGACGAAACGGAAGAATGAGCACTCTGT
CTGTTTACACATCAGTGTACATACACGCGCGAGTGCGACCCCGGTTGGGT
CGTCTAGCTAGTCGTAGTGGAGGAAGGGGGCCAGTGGGGCAGACGACAGA
TATGCCAATGATGGGCGAAAAACAAGCGTACACGCGCGAGTACCTTGTGA
GATAGGTATATATTCAGCGCGAATGGAGACCGAGAAAGGAATACACATAA
TGGAGCTGCTCGCATGCTTTTCGTTTCCTTTTTCGTCCAGTCGAATGCGG
CGATCGGTCCAGCTCGGCGTCGTGGGTGTTGAGGCGAGGAAGCCGTGGAG
CCGACACCCTTCTCCGAAATCAAGAAACAACTCAGCAAGTAACACGCGAA
CGGTCTCTCCCCCCTCTTGCCGACCCCTCCACCCCCCACCCCGCCCCGCT
CTCTCTTTCTCGTGTTGGTGTTGGGAAGGTGGGACTCCGAGAGGAGCCGT
CGTGGACGTTTCCGACGGTGTTGGCTCCACTCGCCGCTCGTCTAGCGGCG
GCGGGAATACCGACGACGGACTCTCTGTGCGAGGCAGCGACAAGCGGCGT
CCTCTTGTCAAAGTGAGGGGTCGGGGGGGGGGGGGGGGGGGGCGTAACTC
GCCAAGTAGGTCGGAGTTAAGCTTTTCTCTGTAGAGGACGGGGATATATT
ATATTTTGTAGAGAGAGGTGATGGAGGTTGGTTTCTCCGCTATGGAGGTG
CTGTGGTGGGTGTGGTCGACAATGGGGGACAGCGAGAGAAAAACGTTCGA
AATTGACCAATGCCGCCTGATCAACGGCGAGCATTGGTGCTGCCCGATCA
AAGGCGAGCATTAAACTGGGTGGTCGGCTTTTTTGGGGGGGGGTAGTAGT
ACGAAGGTTATAGATCCTCTGATCTTAGAAACGGAACTTGGAACGACCTT
TAAAATCGAGCATTTTTGCCGCTAAAATCACGAGCAAGTGATTCGTGGTC
GTCCAAGACTCCTCCGCCGGCTTTTTTTTTCCTGCCGTGTTGCGCCTCTC
ATGTTCGCGCCATCGTTTTGAATTTCTTGTCTGCGTGTCTCCTGCCTTCC
GTTTTGTGTTGGCAGGTTGGCAGCAGCAGCAGCAGCAGCAGAGACGCCAG
CGGCTGCCACAGCAGTTGGGCAAGAAGGAGGCGAAGAACAGCCGAAAGAG
TTGCCCAAATGGGAGGACACCCAGAGGGCACTACAGGCCCGCGCAACCGT
GCCGGATTTCACAGAGCAGACGGTTGACATCATCGCGCGGATCGTGTCTG
GGCGATGCTCGTAGGCGACCACCAGAGAGCGGGTGTAGCGAATTGAAACG
CTCGGAAATGAGCCCACTCTGCAGGGAGAGATCTGGGGCCCTTAAGACTC
AGGCAGCCAGGAATTGTCGCGCTTGTCGCTTATTGCTCCAGACGCGAACG
AGAGAGCACCTTGCGCCCTCCACGCATTGAACGGCAAACGGCGCGCTGTA
AAAGTGCGGCCTCTTGGCGCTCTCTTGCCTGTGGAAACGAAAACCCACAC
CACCCATATAGACTACACAGGGTGGCTGGATGTTTTTCGTGGCACGATAA
ATAAGTGTTCCGATTGGTTGCAGCCTGGTTGTGTTGTAGCCGTGCGTGCA
CACCCTTAAGTTCTTGTTTTGTTGGAGAAAAACGGAATGGCTTGCACACT
TAAACTATCGACCTTGCGTCTTTGTTTGGGGGTGTAGATTAGCCTGTTGA
TTGCCGAGGAAGAAGACGACGTCTTTCGCTCGTAGGACCAGCGCGCAAGC
GAGAACGGTTTTTGTGCCGGGTTGACTTGGTCCAGAGGTCGCGAACTTTG
TCTTGCATTTTATTATTAACAGCAGCGCAATCATGCGGCGATCCATGACA
GGGTTCATGTACAGGAGTGCCGCGTACTTAAAACATAAATGATTCCGCAA
CGAAGTTTCTAGGCGATAAATAGCCAGCAACAGCAGTACTGTCGGTGTAA
CTGTGTAGCAGTGACAGTTACGTGTCGGTTCGACGGTCTATTCGGTATTC
TGACTTTGGATCCACTCTGTGCTTGCCTCCCGAGGGCAATCTCTCTCGTT
GTCCTGCTTGATAATACGTGGTGTTAACATCAATCCATTGACCAGCTGCT
CGGTCGCACTAGCCGGTGCGAGGGTAACGAACAAGTACGGCCTGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5522:5744..10039-

>mRNA_L-elsbetiae_contig5522.13809.1 ID=mRNA_L-elsbetiae_contig5522.13809.1|Name=mRNA_L-elsbetiae_contig5522.13809.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig5522:5744..10039- (Laminarionema elsbetiae ELsaHSoW15)
ATGACCCCCCAAGAGATGACCCCCCAAGAGGTGGAAATCCTGGACATGTA
TGAGCACGTGAAGCAGGGGGGCTACTCTAAGGAGGTGGAAATCCTGGACA
TGTATGAGCACGTGAAGCAGGGGGGCTACTCTAAGGAGGCCGTGAAGGTC
AGCGTCCGCGTGGCCAAAGGGACCGCCGAAGACGGCGAAAACGGAGACAC
CGCCACTGCCGGCGACGGCACCGGCGTCGCGGCCTTCAGCAGCGTGGAAT
CGTCGGCCATAACGTACGTCATGACGCCCCGCCTAGTCCAGAAGTTCGTG
CCCCCCTCGCCTCAGTACCTCACGGCCGTGTACCGGACCCTGACGTCGAG
TTTTCCAGAGTTCTCGGACCGCCCGATCGAAATCTGTGACTACACCGGGC
CGTGAAGGTCAGCGTCCGCGTGGCCAAAGGGACCGCCGAAGACGGCGAAA
ACGGAGACACCGCCACTGCCGGCGACGGCACCGGCGTCGCGGCCTTCAGC
AGCGTGGAATCGTCGGCCATAACGTACGTCATGACGCCCCGCCTAGTCCA
GAAGTTCGTGCCCCCCTCGCCTCAGTACCTCACGGCCGTGTACCGGACCC
TGACGTCGAGTTTTCCAGAGTTCTCGGACCGCCCGATCGAAATCTGTGAC
TACACCGGCACCAAGAGGGCGGAGGGGGCGCACCCTGGGATTCAAGCCCT
ACCGCTCGAGGCATTTTTGCTAGAGCACCAAGAGGGCGGAGGGGGCGCAC
CCTGGGATTCAAGCCCTACCGCTCGAGGCATTTTTGCTAGAGGTGGGACT
CCGAGAGGAGCCGTCGTGGACGTTTCCGACGGTGTTGGCTCCACTCGCCG
CTCGTCTAGCGGCGGCGGGAATACCGACGACGGACTCTCTGTGCGAGGCA
GCGACAAGCGGCGTCCTCTTGTCAAAGTGGGACTCCGAGAGGAGCCGTCG
TGGACGTTTCCGACGGTGTTGGCTCCACTCGCCGCTCGTCTAGCGGCGGC
GGGAATACCGACGACGGACTCTCTGTGCGAGGCAGCGACAAGCGGCGTCC
TCTTGTCAAAGTTGGCAGCAGCAGCAGCAGCAGCAGAGACGCCAGCGGCT
GCCACAGCAGTTGGGCAAGAAGGAGGCGAAGAACAGCCGAAAGAGTTGCC
CAAATGGGAGGACACCCAGAGGGCACTACAGGCCCGCGCAACCGTGCCGG
ATTTCACAGAGCAGACGGTTGACATCATCGCGCGGATCGTGTCTGGGCGA
TGCTCGTAGGTTGGCAGCAGCAGCAGCAGCAGCAGAGACGCCAGCGGCTG
CCACAGCAGTTGGGCAAGAAGGAGGCGAAGAACAGCCGAAAGAGTTGCCC
AAATGGGAGGACACCCAGAGGGCACTACAGGCCCGCGCAACCGTGCCGGA
TTTCACAGAGCAGACGGTTGACATCATCGCGCGGATCGTGTCTGGGCGAT
GCTCGTAG
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