mRNA_L-elsbetiae_contig55.13768.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig55.13768.1
Unique NamemRNA_L-elsbetiae_contig55.13768.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig55.13768.1 vs. uniprot
Match: A0A6H5L2X6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2X6_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.250e-29
Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = 2 
Query:   35 GMEEAALRAWASGRAYSGLAGLRRNALKRRLGLFLLGRGTAGRRRLLGRKGLSALEAALLRAGGERDLVAEAVTGRVRAALKRWGRRASVLRARKA 322
            G+E AALRAWASGR YSGLAGLRRNALK RL +FLL RG+A RRRLLG +GL ALEAA+LRA   RD+ AEA+ GR RAAL RWG RASVLRAR+A
Sbjct:  119 GIETAALRAWASGRLYSGLAGLRRNALKHRLEVFLLDRGSAARRRLLGLRGLGALEAAVLRAAWRRDVAAEALAGRARAALGRWGWRASVLRARRA 214
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig55.13768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2X6_9PHAE1.250e-2975.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig55contigL-elsbetiae_contig55:64811..65152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816577.3665867-CDS-L-elsbetiae_contig55:64810..651521622816577.3665867-CDS-L-elsbetiae_contig55:64810..65152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig55 64811..65152 +
1691683659.7233055-CDS-L-elsbetiae_contig55:64810..651521691683659.7233055-CDS-L-elsbetiae_contig55:64810..65152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig55 64811..65152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig55.13768.1prot_L-elsbetiae_contig55.13768.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig55 64811..65152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig55.13768.1

>prot_L-elsbetiae_contig55.13768.1 ID=prot_L-elsbetiae_contig55.13768.1|Name=mRNA_L-elsbetiae_contig55.13768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
ARGRFAGGGPQGHGRGGAPRVGVGEGVLRPGRSAAQRAEAPPGLVPARQG
HGRPPAPPGEEGTLRPGGRSAARRRGEGPRRRGRDREGAGGAEAVGSAGV
GTAGAEGCSRGGG*
back to top

mRNA from alignment at L-elsbetiae_contig55:64811..65152+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig55.13768.1 ID=mRNA_L-elsbetiae_contig55.13768.1|Name=mRNA_L-elsbetiae_contig55.13768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=342bp|location=Sequence derived from alignment at L-elsbetiae_contig55:64811..65152+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCGAGGGCGCTTCGCTGGCGGCGGCCCGCAGGGGCATGGAAGAGGCGG
CGCTCCGCGCGTGGGCGTCGGGGAGGGCGTACTCCGGCCTGGCCGGTCTG
CGGCGCAACGCGCTGAAGCGCCGCCTGGGCTTGTTCCTGCTCGGCAGGGG
CACGGCCGGCCGCCGGCGCCTCCTGGGGAGGAAGGGACTCTCCGCCCTGG
AGGCCGCTCTGCTGCGCGCCGGCGGGGAGAGGGACCTCGTCGCCGAGGCC
GTGACCGGGAGGGTGCGGGCGGCGCTGAAGCGGTGGGGTCGGCGGGCGTC
GGTACTGCGGGCGCGGAAGGCTGTTCGCGCGGAGGAGGTTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig55:64811..65152+

>mRNA_L-elsbetiae_contig55.13768.1 ID=mRNA_L-elsbetiae_contig55.13768.1|Name=mRNA_L-elsbetiae_contig55.13768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig55:64811..65152+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCGAGGGCGCTTCGCTGGCGGCGGCCCGCAGGGGCATGGAAGAGGCGG
CGCTCCGCGCGTGGGCGTCGGGGAGGGCGTACTCCGGCCTGGCCGGTCTG
CGGCGCAACGCGCTGAAGCGCCGCCTGGGCTTGTTCCTGCTCGGCAGGGG
CACGGCCGGCCGCCGGCGCCTCCTGGGGAGGAAGGGACTCTCCGCCCTGG
AGGCCGCTCTGCTGCGCGCCGGCGGGGAGAGGGACCTCGTCGCCGAGGCC
GTGACCGGGAGGGTGCGGGCGGCGCTGAAGCGGTGGGGTCGGCGGGCGTC
GGTACTGCGGGCGCGGAAGGCTGTTCGCGCGGAGGAGGTTAGGCGCGAGG
GCGCTTCGCTGGCGGCGGCCCGCAGGGGCATGGAAGAGGCGGCGCTCCGC
GCGTGGGCGTCGGGGAGGGCGTACTCCGGCCTGGCCGGTCTGCGGCGCAA
CGCGCTGAAGCGCCGCCTGGGCTTGTTCCTGCTCGGCAGGGGCACGGCCG
GCCGCCGGCGCCTCCTGGGGAGGAAGGGACTCTCCGCCCTGGAGGCCGCT
CTGCTGCGCGCCGGCGGGGAGAGGGACCTCGTCGCCGAGGCCGTGACCGG
GAGGGTGCGGGCGGCGCTGAAGCGGTGGGGTCGGCGGGCGTCGGTACTGC
GGGCGCGGAAGGCTGTTCGCGCGGAGGAGGTTAG
back to top