mRNA_L-elsbetiae_contig5478.13743.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5478.13743.1
Unique NamemRNA_L-elsbetiae_contig5478.13743.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5478.13743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5478contigL-elsbetiae_contig5478:1732..3463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1338
Cds size801
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5478.13743.1prot_L-elsbetiae_contig5478.13743.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5478 2167..3361 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.8600943-UTR-L-elsbetiae_contig5478:1731..21661622816574.8600943-UTR-L-elsbetiae_contig5478:1731..2166Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5478 1732..2166 -
1691683657.8677948-UTR-L-elsbetiae_contig5478:1731..21661691683657.8677948-UTR-L-elsbetiae_contig5478:1731..2166Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5478 1732..2166 -
1622816574.8905878-UTR-L-elsbetiae_contig5478:3361..34631622816574.8905878-UTR-L-elsbetiae_contig5478:3361..3463Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5478 3362..3463 -
1691683657.8993335-UTR-L-elsbetiae_contig5478:3361..34631691683657.8993335-UTR-L-elsbetiae_contig5478:3361..3463Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5478 3362..3463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.8702536-CDS-L-elsbetiae_contig5478:2166..22781622816574.8702536-CDS-L-elsbetiae_contig5478:2166..2278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5478 2167..2278 -
1691683657.8798006-CDS-L-elsbetiae_contig5478:2166..22781691683657.8798006-CDS-L-elsbetiae_contig5478:2166..2278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5478 2167..2278 -
1622816574.880313-CDS-L-elsbetiae_contig5478:2672..33611622816574.880313-CDS-L-elsbetiae_contig5478:2672..3361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5478 2673..3361 -
1691683657.8895986-CDS-L-elsbetiae_contig5478:2672..33611691683657.8895986-CDS-L-elsbetiae_contig5478:2672..3361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5478 2673..3361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5478.13743.1

>prot_L-elsbetiae_contig5478.13743.1 ID=prot_L-elsbetiae_contig5478.13743.1|Name=mRNA_L-elsbetiae_contig5478.13743.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=267bp
MHEAAVVRRRGRHEARVLCWTCQARHDRPQPQEEVCTPWLYHAAVVRRRG
KHEARVLRWACQGRHDRPQPQQDVRTPGLHHASVVRRRGKHEARVLRRTC
EARHEQPEEQAQDEVRTPGLHQESVFRRCGKQEARVLCWTCGGRHALSHQ
QVRTSGLHQGPVVWRSGKHEARVLCWTCQGRHDQPPPQEEVLTPGPYHAA
VVRRRGKHEARVLRWTRQGRRPVGHDICESSSRRQLTQALRGTKWHVRGG
RFCSTRAFRRLISAHP*
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mRNA from alignment at L-elsbetiae_contig5478:1732..3463-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5478.13743.1 ID=mRNA_L-elsbetiae_contig5478.13743.1|Name=mRNA_L-elsbetiae_contig5478.13743.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1732bp|location=Sequence derived from alignment at L-elsbetiae_contig5478:1732..3463- (Laminarionema elsbetiae ELsaHSoW15)
CTACCGGGAAGAAGGTACCGCCAAGCGCATCTTGTGCGCCGGGCATGCGG
AGGCAAGGATGATCTTTGTCCAACAGCAGAGGAGGAAGTGCGCACACCGG
GGATGCACGAAGCAGCCGTCGTTCGGCGTCGCGGGAGGCACGAAGCGAGA
GTTCTGTGCTGGACATGCCAAGCAAGGCATGATCGACCTCAACCACAGGA
AGAAGTGTGCACACCATGGCTGTACCACGCAGCCGTCGTTCGGCGTCGCG
GGAAGCACGAAGCGAGAGTTCTGCGCTGGGCATGCCAAGGGCGGCATGAT
CGACCTCAACCACAGCAAGACGTGCGCACACCAGGGCTGCACCACGCATC
CGTCGTTCGGCGTCGCGGGAAGCACGAAGCGAGAGTTCTGCGCCGGACAT
GCGAAGCAAGGCATGAACAACCTGAAGAACAGGCACAGGACGAAGTGCGC
ACACCAGGACTGCATCAAGAGTCCGTCTTTCGGCGTTGCGGGAAGCAGGA
AGCGAGAGTTCTGTGCTGGACATGCGGAGGAAGGCATGCTCTATCTCATC
AACAAGTGCGCACATCGGGGCTGCACCAAGGGCCCGTCGTTTGGCGTAGC
GGGAAGCACGAAGCGAGAGTTCTGTGCTGGACATGCCAAGGAAGGCATGA
TCAACCTCCTCCACAGGAAGAAGTGCTCACACCAGGGCCGTACCACGCAG
CCGTCGTTCGGCGTCGCGGGAAGCACGAAGCGAGAGTTCTGCGCTGGACA
CGCCAAGGAAGAAGACCTGTTGGGCATGACATATGCGAATCGTGAGAAGA
CGACATAGACATATTCAACATTTTCGAAGAGAAAAACTTTGCTCAACGTT
GGGCTTTTTCCGACCGCGCACGATAGGCGATCTTCGGAGATCGCGAGATC
TTCCTTCCGATCGCAATCTTTCGTTGGATCCATTTGTTGTAGGGATTTCA
ACGATTTCGTCAGCACCACACAAGAAAAAAGCCTTCCAGCCTCACATGCC
CAGCTCTCCACTTGTCCACCGTCACACCAAACACCCCCATACACATTTTT
CTTGCTGCATCCACACCTGCACACCAACTACATGATTCATACCCTGCGCT
TGAAAGCTCGCACTATCACAGTTCTCTTTTCTCTTTGCTAACCCCCCCCC
CCACACACACACACTCATGTCGTGCGTACGTGCAGATCCTCTCGGAGGCA
GCTGACACAAGCACTACGTGGAACGAAGTGGCATGTTCGTGGCGGCCGGT
TTTGCTCTACCAGAGCCTTCCGCCGCCTTATTTCTGCGCATCCGTAATAC
TTTGGGGCCACCTTCCTCGGCATTCCGTTTTTGAGCGTTGTTTGGGTCAT
TACGGGGTAAACACAGCGTTGTTGGTGGCCCACACGAAAAACAAAAGCAA
CGAAATCATACGACAGACATTGAATAAGACGTCCTACTTCTTGTATTCGT
GTATTGGTTTGCGTCATGATCGTTGCTACAGTGGTTGGGGAGTTTGGCGT
AGCACATATGCGTGAAAAGTCGACATGTGTAGGCTTGACGAACCAGCATC
CACGTAATTATTGTGATGTTCTTTTTCTGTTGTAGAATGGTTGGTGTTGC
GGTTTTCTAGATTGTCGTCGTAAGGGCGACGATTGTCGTCGTAAGGGCGA
CACAAGCGCAAGATTTCTCTGTTTGTGTCGCACAGCGTCCTTTTTTTAAC
TCGTCGAATCAGAACGAAATACATTGTCTGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5478:1732..3463-

>mRNA_L-elsbetiae_contig5478.13743.1 ID=mRNA_L-elsbetiae_contig5478.13743.1|Name=mRNA_L-elsbetiae_contig5478.13743.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1602bp|location=Sequence derived from alignment at L-elsbetiae_contig5478:1732..3463- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACGAAGCAGCCGTCGTTCGGCGTCGCGGGAGGCACGAAGCGAGAGT
TCTGTGCTGGACATGCCAAGCAAGGCATGATCGACCTCAACCACAGGAAG
AAGTGTGCACACCATGGCTGTACCACGCAGCCGTCGTTCGGCGTCGCGGG
AAGCACGAAGCGAGAGTTCTGCGCTGGGCATGCCAAGGGCGGCATGATCG
ACCTCAACCACAGCAAGACGTGCGCACACCAGGGCTGCACCACGCATCCG
TCGTTCGGCGTCGCGGGAAGCACGAAGCGAGAGTTCTGCGCCGGACATGC
GAAGCAAGGCATGAACAACCTGAAGAACAGGCACAGGACGAAGTGCGCAC
ACCAGGACTGCATCAAGAGTCCGTCTTTCGGCGTTGCGGGAAGCAGGAAG
CGAGAGTTCTGTGCTGGACATGCGGAGGAAGGCATGCTCTATCTCATCAA
CAAGTGCGCACATCGGGGCTGCACCAAGGGCCCGTCGTTTGGCGTAGCGG
GAAGCACGAAGCGAGAGTTCTGTGCTGGACATGCCAAGGAAGGCATGATC
AACCTCCTCCACAGGAAGAAGTGCTCACACCAGGGCCGTACCACGCAGCC
GTCGTTCGGCGTCGCGGGAAGCACGAAGCGAGAGTTCTGCGCTGGACACG
CCAAGGAAGAAGACCTGTTGGGCATGACATATGCGAATCATGCACGAAGC
AGCCGTCGTTCGGCGTCGCGGGAGGCACGAAGCGAGAGTTCTGTGCTGGA
CATGCCAAGCAAGGCATGATCGACCTCAACCACAGGAAGAAGTGTGCACA
CCATGGCTGTACCACGCAGCCGTCGTTCGGCGTCGCGGGAAGCACGAAGC
GAGAGTTCTGCGCTGGGCATGCCAAGGGCGGCATGATCGACCTCAACCAC
AGCAAGACGTGCGCACACCAGGGCTGCACCACGCATCCGTCGTTCGGCGT
CGCGGGAAGCACGAAGCGAGAGTTCTGCGCCGGACATGCGAAGCAAGGCA
TGAACAACCTGAAGAACAGGCACAGGACGAAGTGCGCACACCAGGACTGC
ATCAAGAGTCCGTCTTTCGGCGTTGCGGGAAGCAGGAAGCGAGAGTTCTG
TGCTGGACATGCGGAGGAAGGCATGCTCTATCTCATCAACAAGTGCGCAC
ATCGGGGCTGCACCAAGGGCCCGTCGTTTGGCGTAGCGGGAAGCACGAAG
CGAGAGTTCTGTGCTGGACATGCCAAGGAAGGCATGATCAACCTCCTCCA
CAGGAAGAAGTGCTCACACCAGGGCCGTACCACGCAGCCGTCGTTCGGCG
TCGCGGGAAGCACGAAGCGAGAGTTCTGCGCTGGACACGCCAAGGAAGAA
GACCTGTTGGGCATGACATATGCGAATCATCCTCTCGGAGGCAGCTGACA
CAAGCACTACGTGGAACGAAGTGGCATGTTCGTGGCGGCCGGTTTTGCTC
TACCAGAGCCTTCCGCCGCCTTATTTCTGCGCATCCGTAAATCCTCTCGG
AGGCAGCTGACACAAGCACTACGTGGAACGAAGTGGCATGTTCGTGGCGG
CCGGTTTTGCTCTACCAGAGCCTTCCGCCGCCTTATTTCTGCGCATCCGT
AA
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