mRNA_L-elsbetiae_contig5473.13735.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5473.13735.1
Unique NamemRNA_L-elsbetiae_contig5473.13735.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5473.13735.1 vs. uniprot
Match: D8LBT3_ECTSI (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT3_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 1.430e-58
Identity = 115/193 (59.59%), Postives = 124/193 (64.25%), Query Frame = 2
Query:  647 RGPAERLALLPLPWFRCGFVPPATKESCRRVHTEAAGGFGGSNASFYEKSRPGYPAQALRAIEAEIRRGGCIRRVESGSSDGNDIVDLGCGTGKFTREILPFARSEGLSLVGVEPVKAMRDQFEAALPGVRVIEGTGEAIPVPDSSARALIAAQSFHWMSSPATLRQVHRVLVPGSLFALVWNTRDYTVPWVR 1225
            RG A   ALL     R  FVPP+TK   R VHTEA GGFGG+NASFYE +RPGYPA ALRAIEAEIRR G        +  G  +VDLG GTGKFTR ILPFA SEG                             GEAIP+PDSSARAL+A QSFHWMSS ATLR+VHRVLVPG LF L+WNTRD T PWVR
Sbjct:    2 RGQARLSALLSR--VRPPFVPPSTKAG-RWVHTEAVGGFGGNNASFYENTRPGYPAHALRAIEAEIRRSGL-------TGSGELLVDLGAGTGKFTRNILPFALSEG----------------------------AGEAIPIPDSSARALVAPQSFHWMSSAATLREVHRVLVPGGLFVLMWNTRDCTRPWVR 156          
BLAST of mRNA_L-elsbetiae_contig5473.13735.1 vs. uniprot
Match: UPI001B32B7EE (methyltransferase domain-containing protein n=1 Tax=Pseudomonas sp. Tri1 TaxID=2823875 RepID=UPI001B32B7EE)

HSP 1 Score: 183 bits (464), Expect = 6.090e-50
Identity = 110/283 (38.87%), Postives = 152/283 (53.71%), Query Frame = 2
Query:  770 SNASFYEKSRPGYPAQALRAIEAEIRRGGCIRRVESGSSDGNDIVDLGCGTGKFTREILPFARSEGLSLVGVEPVKAMRDQFEAALPGVRVIEGTGEAIPVPDSSARALIAAQSFHWMSSPATLRQVHRVLVPGSLFALVWNTRDYTVPWVRALEDIIDPFYGDDVPRQHGGTWRQSFRDLEQSSDGGKETGGDGRQRRSFFG--ELTEQHFKHSQLLTPDELDDRMRSISVIATRPEPERAEASRRARELVETHPDTQQELRKSGRVELFYDTEVYWCRKLD 1612
            S A+ Y   RP YPA+    +  E+           G   G+ ++DLG GTGKFTR      +S G+ +V VEPV+AMR +F  +LP V ++EGT E IP    +A+AL+ AQ+FHW ++   L ++HRVL P     L+WN RD TV WV A+ DII P+ GD  PR H G WR  F            TG       ++F   ELT   + HS     + + DR  S+S IA  P  ERA+ + + ++L++THP     LR    +E  Y T+ Y CR+LD
Sbjct:   14 SQANTYAAGRPSYPAELSTWLTKEL-----------GVLPGSAVIDLGAGTGKFTR----LLKSMGIDVVAVEPVEAMRTEFAKSLPDVGIVEGTAECIPFGSGTAQALVCAQAFHWFANEKALAEIHRVLRPNGRLGLIWNVRDETVDWVAAITDIITPYEGD-APRFHTGAWRSPF------------TG-------NYFSAPELTCFQYTHSGT-AKEVIIDRFLSVSFIAALPPAERAKVTEQLQQLIDTHPS----LRGREIIEFPYQTQAYACRRLD 256          
BLAST of mRNA_L-elsbetiae_contig5473.13735.1 vs. uniprot
Match: W8PVT5_9PSED (SAM-dependent methyltransferase n=1 Tax=Pseudomonas brassicacearum TaxID=930166 RepID=W8PVT5_9PSED)

HSP 1 Score: 182 bits (462), Expect = 1.180e-49
Identity = 107/281 (38.08%), Postives = 152/281 (54.09%), Query Frame = 2
Query:  770 SNASFYEKSRPGYPAQALRAIEAEIRRGGCIRRVESGSSDGNDIVDLGCGTGKFTREILPFARSEGLSLVGVEPVKAMRDQFEAALPGVRVIEGTGEAIPVPDSSARALIAAQSFHWMSSPATLRQVHRVLVPGSLFALVWNTRDYTVPWVRALEDIIDPFYGDDVPRQHGGTWRQSFRDLEQSSDGGKETGGDGRQRRSFFGELTEQHFKHSQLLTPDELDDRMRSISVIATRPEPERAEASRRARELVETHPDTQQELRKSGRVELFYDTEVYWCRKLD 1612
            S A  Y K RP YP++    +E E+           G   G+ ++DLG GTGKFTR      ++  L +V VEPV+AMR +F  +LP VR++EGT E+IP    +A+AL+ AQ+FHW ++   L ++HRVL P     L+WN RD +V WV A+ DII P+ GD  PR H G WR  F   + S+                  ELT   + HS     + + DR  S+S IA  P  E+A+ S + ++L++THP     LR    ++  Y T+ Y CR+LD
Sbjct:   14 SQAHTYAKGRPDYPSELRAWLEEEL-----------GLVPGSAVIDLGAGTGKFTR----LLKAMELDVVAVEPVEAMRAEFAKSLPDVRMVEGTAESIPFGSGTAQALVCAQAFHWFANERALAEIHRVLRPNGRLGLIWNVRDESVDWVAAITDIITPYEGD-TPRFHTGAWRSPFAGNDFSTP-----------------ELTCFQYTHSGT-AKEVIMDRFLSVSFIAALPVAEKAKVSDQLQDLIDTHPS----LRGRDTIDFPYQTQAYLCRRLD 256          
BLAST of mRNA_L-elsbetiae_contig5473.13735.1 vs. uniprot
Match: A0A329I8R9_9PSED (SAM-dependent methyltransferase n=1 Tax=Pseudomonas sp. RIT 412 TaxID=2202161 RepID=A0A329I8R9_9PSED)

HSP 1 Score: 181 bits (460), Expect = 2.360e-49
Identity = 116/294 (39.46%), Postives = 153/294 (52.04%), Query Frame = 2
Query:  737 VHTEAAGGFGGSNASFYEKSRPGYPAQALRAIEAEIRRGGCIRRVESGSSDGNDIVDLGCGTGKFTREILPFARSEGLSLVGVEPVKAMRDQFEAALPGVRVIEGTGEAIPVPDSSARALIAAQSFHWMSSPATLRQVHRVLVPGSLFALVWNTRDYTVPWVRALEDIIDPFYGDDVPRQHGGTWRQSFRDLEQSSDGGKETGGDGRQRRSFFG--ELTEQHFKHSQLLTPDELDDRMRSISVIATRPEPERAEASRRARELVETHPDTQQELRKSGRVELFYDTEVYWCRKLD 1612
            VH  A  GF  + A+ Y + RP YP +            G   R   G  D   +VDLG GTGKFTR + P        L+ VEPV+AMR +F   LP + VI+GT +++P+ D S  AL+ AQ+FHW +    L ++HRVLVPG    LVWN RD +V WV  +  II P+ GD  PR H G WR+ F+D                     FG  ELT  ++ HS       + +R  S+S IA  PE E+AE + + REL++THP     LR    VE  Y T+ Y CR+LD
Sbjct:    4 VHNAAQVGFS-TQAATYTQGRPDYPDEL-----------GHWLRHTLGIDDQRSVVDLGAGTGKFTRLLEPLTER----LIAVEPVEAMRREFARGLPRIAVIDGTAQSLPLADGSVDALVCAQAFHWFADDTALAEIHRVLVPGGRLGLVWNVRDESVDWVAEITRIITPYEGD-TPRFHTGQWRRPFQDSH------------------CFGQPELTCFNYHHSGS-AETVIMNRFLSVSFIAALPEAEKAEVTAQLRELIQTHPA----LRGREVVEFPYQTQAYLCRRLD 257          
BLAST of mRNA_L-elsbetiae_contig5473.13735.1 vs. uniprot
Match: A0A0H5A4Q5_9PSED (SAM-dependent methyltransferase n=11 Tax=Pseudomonas TaxID=286 RepID=A0A0H5A4Q5_9PSED)

HSP 1 Score: 177 bits (450), Expect = 6.300e-48
Identity = 110/292 (37.67%), Postives = 152/292 (52.05%), Query Frame = 2
Query:  737 VHTEAAGGFGGSNASFYEKSRPGYPAQALRAIEAEIRRGGCIRRVESGSSDGNDIVDLGCGTGKFTREILPFARSEGLSLVGVEPVKAMRDQFEAALPGVRVIEGTGEAIPVPDSSARALIAAQSFHWMSSPATLRQVHRVLVPGSLFALVWNTRDYTVPWVRALEDIIDPFYGDDVPRQHGGTWRQSFRDLEQSSDGGKETGGDGRQRRSFFGELTEQHFKHSQLLTPDE-LDDRMRSISVIATRPEPERAEASRRARELVETHPDTQQELRKSGRVELFYDTEVYWCRKL 1609
            VH  A  GF  + A  Y + RP YP Q    +   +R       +++ S+    ++DLG GTGKFTR +   A +    L+ VEPV AM  Q    LPGVR++ GT E+IP+   SA AL+ AQ+FHW S+ A L ++HRVL P     LVWN RD  V WV A+ +II P+ GD  PR H G WR++F                     ++F E     F +S + +P E + DR  S+S IA  P  E+A  + + R L++THPD    LR    +   Y T+ Y C +L
Sbjct:    4 VHASAQQGFS-TQAVTYAQGRPNYPRQLTGWLTETLR-------IDAQST----VIDLGAGTGKFTRLLSSLAPT----LIAVEPVAAMGAQLAKLLPGVRLVSGTAESIPLASGSADALVCAQAFHWFSTQAALAEIHRVLKPEGRLGLVWNVRDEAVGWVAAITEIITPYEGD-TPRFHTGLWREAF-------------------NGAYFSEPEVTRFPYSHVGSPQEVIMDRFLSVSFIAALPAAEKANVTAQLRTLIDTHPD----LRGRDTIAFPYQTQAYICHRL 255          
BLAST of mRNA_L-elsbetiae_contig5473.13735.1 vs. uniprot
Match: A0A5E6U8X7_PSEFL (Putative methyltransferase n=9 Tax=Pseudomonas TaxID=286 RepID=A0A5E6U8X7_PSEFL)

HSP 1 Score: 177 bits (450), Expect = 6.300e-48
Identity = 107/281 (38.08%), Postives = 149/281 (53.02%), Query Frame = 2
Query:  770 SNASFYEKSRPGYPAQALRAIEAEIRRGGCIRRVESGSSDGNDIVDLGCGTGKFTREILPFARSEGLSLVGVEPVKAMRDQFEAALPGVRVIEGTGEAIPVPDSSARALIAAQSFHWMSSPATLRQVHRVLVPGSLFALVWNTRDYTVPWVRALEDIIDPFYGDDVPRQHGGTWRQSFRDLEQSSDGGKETGGDGRQRRSFFGELTEQHFKHSQLLTPDELDDRMRSISVIATRPEPERAEASRRARELVETHPDTQQELRKSGRVELFYDTEVYWCRKLD 1612
            S AS Y K RPGYP +    +   +           G   G+ ++DLG GTGKFTR      +S  + +V VEPV+AMR +F  +LP +R+++GT E IP    + +AL+ AQ+FHW ++   L ++HRVL P     L+WN RD +V WV A+ DII P+ GD  PR H G WR  F            TG     R     ELT   + HS     + + DR+ S+S IA  P  E+A+ + + + L+ETHP     LR    +E  Y T+ Y CR+LD
Sbjct:   14 SQASTYAKGRPGYPIELHTWLREVL-----------GILPGSTVIDLGAGTGKFTR----LLKSLEIDVVAVEPVEAMRTEFAKSLPDIRILDGTAECIPFGSETTQALVCAQAFHWFANERALAEIHRVLKPNGRLGLIWNVRDESVDWVAAITDIITPYEGD-TPRFHTGFWRLPF------------TG-----RHFSTPELTCFRYTHSGS-AKEVIIDRILSVSFIAALPPAEKAKVTEQLQNLIETHPF----LRGRETIEFPYQTQAYLCRRLD 256          
BLAST of mRNA_L-elsbetiae_contig5473.13735.1 vs. uniprot
Match: UPI0019141BBC (class I SAM-dependent methyltransferase n=1 Tax=Pseudomonas sp. TH03 TaxID=2796369 RepID=UPI0019141BBC)

HSP 1 Score: 177 bits (448), Expect = 1.220e-47
Identity = 110/293 (37.54%), Postives = 156/293 (53.24%), Query Frame = 2
Query:  737 VHTEAAGGFGGSNASFYEKSRPGYPAQALRAIEAEIRRGGCIRRVESGSSDGNDIVDLGCGTGKFTREILPFARSEGLSLVGVEPVKAMRDQFEAALPGVRVIEGTGEAIPVPDSSARALIAAQSFHWMSSPATLRQVHRVLVPGSLFALVWNTRDYTVPWVRALEDIIDPFYGDDVPRQHGGTWRQSFRDLEQSSDGGKETGGDGRQRRSFFGELTEQHFKHSQLLTPDE-LDDRMRSISVIATRPEPERAEASRRARELVETHPDTQQELRKSGRVELFYDTEVYWCRKLD 1612
            VH  A  GF  + AS Y   RP YPA     ++A +R          G    + ++DLG GTGKFTR      +S G+ +V +EPV+AMR +F   LP VR++EGT E+IP+   +A+AL+ AQ+FHW ++   L ++HRVL P     L+WN RD +V WV A+ DII P+ GD  PR H G WR+ F                GR    +F +     F ++Q  +  E + DR  S+S IA  P  E+A+   + + L++THP     LR    +E  Y T+ Y C +LD
Sbjct:    4 VHKTAQLGFS-TEASTYAHGRPDYPAD----LKAWLRE-------TLGIDPESTVIDLGAGTGKFTR----LLKSLGIDVVAIEPVEAMRTEFAKNLPDVRILEGTAESIPLESGTAQALVCAQAFHWFATEPALAEIHRVLKPNGRLGLIWNVRDESVDWVAAITDIITPYEGD-TPRFHNGNWRRPFI---------------GR----YFSDPEVTCFPYTQTGSAQEVIIDRFMSVSFIAALPPAEKAKVVEQLQALIQTHPS----LRGRETIEFPYQTQAYVCHRLD 256          
BLAST of mRNA_L-elsbetiae_contig5473.13735.1 vs. uniprot
Match: A0A7V7E654_9PROT (Class I SAM-dependent methyltransferase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A7V7E654_9PROT)

HSP 1 Score: 176 bits (447), Expect = 1.700e-47
Identity = 116/294 (39.46%), Postives = 148/294 (50.34%), Query Frame = 2
Query:  737 VHTEAAGGFGGSNASFYEKSRPGYPAQALRAIEAEIRRGGCIRRVESGSSDGNDIVDLGCGTGKFTREILPFARSEGLSLVGVEPVKAMRDQFEAALPGVRVIEGTGEAIPVPDSSARALIAAQSFHWMSSPATLRQVHRVLVPGSLFALVWNTRDYTVPWVRALEDIIDPFYGDDVPRQHGGTWRQSFRDLEQSSDGGKETGGDGRQRRSFFGELTEQHFKHS-QLLTPDELDDRMRSISVIATRPEPERAEASRRARELVETHPDTQQELRKSGRVELF--YDTEVYWCRKL 1609
            VH  A+ GF    A  Y + RP YPA     +  ++           G S G  +VDLG GTGKFTR +L    + G  +  VEPV AMR QF    PG  V++GT EAIP+PD SA AL+ AQSFHW ++   L ++ RVL PG +  LVWN RD TV WV ++  II PF G   PR H G WRQ F      ++G              FG+L +  F H  Q      L DR+ S+S IA  PE      +   R    THPD       +G+ E+   Y TE + CR+L
Sbjct:    4 VHEAASVGFS-IQAEAYRRGRPDYPAAVDGWLIGQL-----------GLSSGRSVVDLGAGTGKFTRRLL----ATGARVTAVEPVAAMRAQFVLTAPGTLVLDGTAEAIPLPDGSADALVCAQSFHWFANLVALSEIRRVLKPGGVLGLVWNVRDETVDWVASVGRIIQPFEGS-TPRYHKGDWRQLF-----PAEG--------------FGQLEQTVFPHGHQGAVEQVLIDRILSVSFIAALPESMHNLVAAELRHFAATHPDL------AGQKEIIFPYRTEAFCCRRL 255          
BLAST of mRNA_L-elsbetiae_contig5473.13735.1 vs. uniprot
Match: A0A0Q4EK42_9PSED (SAM-dependent methyltransferase n=16 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A0Q4EK42_9PSED)

HSP 1 Score: 176 bits (447), Expect = 1.850e-47
Identity = 112/292 (38.36%), Postives = 154/292 (52.74%), Query Frame = 2
Query:  737 VHTEAAGGFGGSNASFYEKSRPGYPAQALRAIEAEIRRGGCIRRVESGSSDGNDIVDLGCGTGKFTREILPFARSEGLSLVGVEPVKAMRDQFEAALPGVRVIEGTGEAIPVPDSSARALIAAQSFHWMSSPATLRQVHRVLVPGSLFALVWNTRDYTVPWVRALEDIIDPFYGDDVPRQHGGTWRQSFRDLEQSSDGGKETGGDGRQRRSFFGELTEQHFKHSQLLTPDE-LDDRMRSISVIATRPEPERAEASRRARELVETHPDTQQELRKSGRVELFYDTEVYWCRKL 1609
            VHT A  GF  + A+ Y + RP YP Q    +   +     +   +S       ++DLG GTGKFTR +   A S    L+ VEPVKAM  Q    LP VR++ GT EA+P+PD+SA AL+ AQ+FHW S+ A L ++HRVL P     LVWN RD +V WV A+ +II P+ GD  PR H G WR++F            TG        +F       F +  + +P E + DR  S+S IA  P  ++A  + + R+L++THP     LR    V   Y T+ Y C +L
Sbjct:    4 VHTSAQQGFS-TQAATYAQGRPDYPRQLTGWLTNTL-----LINAQS------TVIDLGAGTGKFTRLLSTLAPS----LIAVEPVKAMGAQLSKLLPDVRLLSGTAEAMPLPDASADALVCAQAFHWFSTEAALAEIHRVLKPDGRLGLVWNVRDESVDWVAAITEIITPYEGD-TPRFHTGRWREAF------------TG-------EYFSAPQMSCFAYQHVGSPREVIMDRFLSVSFIAALPAAQKATVTEQLRQLIDTHPA----LRGRDTVAFPYQTQAYVCHRL 255          
BLAST of mRNA_L-elsbetiae_contig5473.13735.1 vs. uniprot
Match: Q1I8Z5_PSEE4 (Methyltransf_11 domain-containing protein n=4 Tax=Pseudomonas entomophila TaxID=312306 RepID=Q1I8Z5_PSEE4)

HSP 1 Score: 176 bits (446), Expect = 2.360e-47
Identity = 110/293 (37.54%), Postives = 157/293 (53.58%), Query Frame = 2
Query:  737 VHTEAAGGFGGSNASFYEKSRPGYPAQALRAIEAEIRRGGCIRRVESGSSDGNDIVDLGCGTGKFTREILPFARSEGLSLVGVEPVKAMRDQFEAALPGVRVIEGTGEAIPVPDSSARALIAAQSFHWMSSPATLRQVHRVLVPGSLFALVWNTRDYTVPWVRALEDIIDPFYGDDVPRQHGGTWRQSFRDLEQSSDGGKETGGDGRQRRSFFGELTEQHFKHSQLLTPDE-LDDRMRSISVIATRPEPERAEASRRARELVETHPDTQQELRKSGRVELFYDTEVYWCRKLD 1612
            VH  A+ GF   + + YE+ RP YP     A++  +R          G  +G  ++DLG GTGKFTR + P A      L  VEPV AMR++F   LP V V+EGT + +PV D+S + L+ AQ+FHW +  A L ++HRVL PG    LVWN RD +V WV  + +II P+ GD  PR H G WR++F               DGR    +F   T     H    +P   + +R+RS+S IA  P+ E+ +   R ++L++ HPD    L+   R+   Y T+ Y C++LD
Sbjct:    4 VHASASTGFTRQSGN-YEQGRPDYPI----ALQGWLRD-------TLGVGNGTTVLDLGAGTGKFTRLLTPLAPR----LTAVEPVAAMRERFHEQLPEVPVLEGTAQHMPVADASQQVLVCAQAFHWFADAAALAEMHRVLAPGGRLGLVWNVRDESVDWVARITEIITPYEGD-TPRFHTGRWREAF---------------DGR----WFSAPTLTTLPHVHEGSPQTVIIERLRSVSFIAALPQVEQDKVMARLQDLIDHHPD----LKGRERIAFPYQTQAYRCQRLD 256          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5473.13735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBT3_ECTSI1.430e-5859.59Methyltransf_11 domain-containing protein n=1 Tax=... [more]
UPI001B32B7EE6.090e-5038.87methyltransferase domain-containing protein n=1 Ta... [more]
W8PVT5_9PSED1.180e-4938.08SAM-dependent methyltransferase n=1 Tax=Pseudomona... [more]
A0A329I8R9_9PSED2.360e-4939.46SAM-dependent methyltransferase n=1 Tax=Pseudomona... [more]
A0A0H5A4Q5_9PSED6.300e-4837.67SAM-dependent methyltransferase n=11 Tax=Pseudomon... [more]
A0A5E6U8X7_PSEFL6.300e-4838.08Putative methyltransferase n=9 Tax=Pseudomonas Tax... [more]
UPI0019141BBC1.220e-4737.54class I SAM-dependent methyltransferase n=1 Tax=Ps... [more]
A0A7V7E654_9PROT1.700e-4739.46Class I SAM-dependent methyltransferase n=1 Tax=Rh... [more]
A0A0Q4EK42_9PSED1.850e-4738.36SAM-dependent methyltransferase n=16 Tax=Pseudomon... [more]
Q1I8Z5_PSEE42.360e-4737.54Methyltransf_11 domain-containing protein n=4 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5473contigL-elsbetiae_contig5473:1510..5688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.1
Seed ortholog evalue8.4e-49
Seed eggNOG ortholog2880.D8LBT3
KEGG koko:K08143,ko:K14300
KEGG TC1.I.1,2.A.1.1.13
KEGG Pathwayko03013,ko04973,map03013,map04973
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005975,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009636,GO:0009987,GO:0016740,GO:0016741,GO:0032259,GO:0042221,GO:0044237,GO:0044238,GO:0044262,GO:0046547,GO:0050896,GO:0051716,GO:0070887,GO:0071704,GO:0097237,GO:0098754,GO:1990748
EggNOG free text desc.trans-aconitate 3-methyltransferase activity
EggNOG OGsCOG0500@1,KOG3010@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000,ko03019,ko03036
Exons7
Model size1819
Cds size1008
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.3069508-UTR-L-elsbetiae_contig5473:1509..21311622816574.3069508-UTR-L-elsbetiae_contig5473:1509..2131Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5473 1510..2131 +
1691683657.4917953-UTR-L-elsbetiae_contig5473:1509..21311691683657.4917953-UTR-L-elsbetiae_contig5473:1509..2131Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5473 1510..2131 +
1622816574.3962162-UTR-L-elsbetiae_contig5473:5499..56881622816574.3962162-UTR-L-elsbetiae_contig5473:5499..5688Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5473 5500..5688 +
1691683657.5892034-UTR-L-elsbetiae_contig5473:5499..56881691683657.5892034-UTR-L-elsbetiae_contig5473:5499..5688Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5473 5500..5688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.3210742-CDS-L-elsbetiae_contig5473:2131..23071622816574.3210742-CDS-L-elsbetiae_contig5473:2131..2307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5473 2132..2307 +
1691683657.5134676-CDS-L-elsbetiae_contig5473:2131..23071691683657.5134676-CDS-L-elsbetiae_contig5473:2131..2307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5473 2132..2307 +
1622816574.3340788-CDS-L-elsbetiae_contig5473:2755..29221622816574.3340788-CDS-L-elsbetiae_contig5473:2755..2922Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5473 2756..2922 +
1691683657.524358-CDS-L-elsbetiae_contig5473:2755..29221691683657.524358-CDS-L-elsbetiae_contig5473:2755..2922Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5473 2756..2922 +
1622816574.3441558-CDS-L-elsbetiae_contig5473:3442..35261622816574.3441558-CDS-L-elsbetiae_contig5473:3442..3526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5473 3443..3526 +
1691683657.5346613-CDS-L-elsbetiae_contig5473:3442..35261691683657.5346613-CDS-L-elsbetiae_contig5473:3442..3526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5473 3443..3526 +
1622816574.3549502-CDS-L-elsbetiae_contig5473:3923..40981622816574.3549502-CDS-L-elsbetiae_contig5473:3923..4098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5473 3924..4098 +
1691683657.5454798-CDS-L-elsbetiae_contig5473:3923..40981691683657.5454798-CDS-L-elsbetiae_contig5473:3923..4098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5473 3924..4098 +
1622816574.3657434-CDS-L-elsbetiae_contig5473:4432..45311622816574.3657434-CDS-L-elsbetiae_contig5473:4432..4531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5473 4433..4531 +
1691683657.556463-CDS-L-elsbetiae_contig5473:4432..45311691683657.556463-CDS-L-elsbetiae_contig5473:4432..4531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5473 4433..4531 +
1622816574.377105-CDS-L-elsbetiae_contig5473:4777..49241622816574.377105-CDS-L-elsbetiae_contig5473:4777..4924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5473 4778..4924 +
1691683657.5672123-CDS-L-elsbetiae_contig5473:4777..49241691683657.5672123-CDS-L-elsbetiae_contig5473:4777..4924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5473 4778..4924 +
1622816574.3867602-CDS-L-elsbetiae_contig5473:5339..54991622816574.3867602-CDS-L-elsbetiae_contig5473:5339..5499Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5473 5340..5499 +
1691683657.578363-CDS-L-elsbetiae_contig5473:5339..54991691683657.578363-CDS-L-elsbetiae_contig5473:5339..5499Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5473 5340..5499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5473.13735.1prot_L-elsbetiae_contig5473.13735.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5473 2132..5499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5473.13735.1

>prot_L-elsbetiae_contig5473.13735.1 ID=prot_L-elsbetiae_contig5473.13735.1|Name=mRNA_L-elsbetiae_contig5473.13735.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=336bp
MQSFCGRARGPAERLALLPLPWFRCGFVPPATKESCRRVHTEAAGGFGGS
NASFYEKSRPGYPAQALRAIEAEIRRGGCIRRVESGSSDGNDIVDLGCGT
GKFTREILPFARSEGLSLVGVEPVKAMRDQFEAALPGVRVIEGTGEAIPV
PDSSARALIAAQSFHWMSSPATLRQVHRVLVPGSLFALVWNTRDYTVPWV
RALEDIIDPFYGDDVPRQHGGTWRQSFRDLEQSSDGGKETGGDGRQRRSF
FGELTEQHFKHSQLLTPDELDDRMRSISVIATRPEPERAEASRRARELVE
THPDTQQELRKSGRVELFYDTEVYWCRKLDYPCSQ*
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mRNA from alignment at L-elsbetiae_contig5473:1510..5688+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5473.13735.1 ID=mRNA_L-elsbetiae_contig5473.13735.1|Name=mRNA_L-elsbetiae_contig5473.13735.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4179bp|location=Sequence derived from alignment at L-elsbetiae_contig5473:1510..5688+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGTGGTGAGGGTGCTGCCTCGACTAGTTGATAAAAATTCTCATATTGA CAAACGTAGAAGCACGGCTTGTGACGCCCCATAAGTGTCTATTTCACCGT CTACTCTACACGTACATTTCATTCTATTTCTAGATCCTCTATGTAGATCC TCTGCGAATCACACCCTCTCTGCTCTTTGCCATGCTTAGGGCAATCCGCG TTATCCACCATATGTAATCATTAGTTGCGTGAGCCTCAACACATCCATCC TCATCTGCGTGCGCATTGAGGACATGATGTCGTCTCGGTGGCTGTGTGTC TAGACTATCCGTCCTTGGACTGGCTCTATCGTCACCCCGCCCACCTCGCT CTCATCCGCTGTGTCACCCGCGTGTTGCCGTTTTCGTGGTCTCTGGCTAC GACCATCAATATTGGTCACTATTAACCGACAGGTTGAAACCTTTTTCTTT TGGAGGAATACGGCGGTAGTTAATTATTTTCTTCTTTTCCGCCCTTTGTT ATTTGTTTTCCAACCGATCCTCCGTCAGAACTTGAACTCTCCTTGTGTTG AGAGTAGTTACCTAGTAGTAGTGATTGCACTGCACGGGAATTCGTGGTGC GTCTTTTTGTAAAAAAGTCGGCATGCAATCCTTCTGTGGCCGTGCGCGTG GCCCGGCAGAGCGGTTGGCACTGCTACCGCTGCCATGGTTCCGGTGTGGC TTTGTTCCGCCTGCGACGAAGGAAAGCTGCAGGCGGGTGCACACGGAAGC TGCGGGCGGTTTCGGGGGAAGCAACGCCTCGTTTTACGAAAAGTCAAGGT GACGTGATGCTGTTGCGACCAGCAGTGTGTTATCGTAAGCACTTGAACGT AAAGAGCCAATATTTACCCATAGACTGGATCTACATACACGGCACCTTTT CAGTTGTTTGGATATGCGTCCAGGGAGTGTACGTGCGTCCCGCTGCTTTG CTTTCAAAACCGCTCTCGGGGTAGATAAGTATAACGGACTACTTACTATG ATCTCTGTAACACCGTAGAGCAGTAGTCGGCCGATGCTGATACCGAATGC ATAGATTTGACGCGATTTCTACCGTTTGATCGACTCCTACCGTCTCTCAG AGTTACCGCCTTTTCCCTGCTACTAGAAGTACGAAGGAGCGTTGCAAACG AGCGTTGCTGCTCCTTCCCCTCCTCTCCTCTTGGGAGGGTATCCAACTAA ATAGCTTTTTGGGGGGTTCGCCGTCTTCGGGCTTCGCCCTAAAAAGGCCA GGGTATCCCGCCCAGGCGCTGAGAGCAATCGAGGCTGAGATACGGCGAGG CGGGTGTATCAGACGGGTCGAGAGCGGTTCCAGCGACGGCAACGACATCG TTGATCTCGGCTGCGGCACGGGGAAGTTCACGCGCGAAATCCTTCCGTTC GCTCGCTCAGAAGGTGCCACCCACCCATACTGAAGCACTGCTACGTTCGC CCCCCTGCGCCTTGGCTTGTCCCACCAGCAAGAGTACTTTAAGGGAGCAC CGTGCGTTCTCCTGCTGCCCCCTGTCTTCCAACCTTTTTGCACGGCCGGA GTAAGTGTATGTAACAATTTAATACAAGAACCCGCGTGCGGGTGTATTTG GCTTTACGAGAGCGCGCCCAATTTCCTTTTTCCGTAACCTTGCCAAACGT GTCTCACTCTGGAAGGATCCCCCCTCTGGTATCCTCGGGATCTTTTTTCT CGAGTTAAGTTCCAACCTCGAGGGGAAATCCTGTCTGAGAGGGGGGAAGT TTTTCGACCAAACGTTGCCCTGTGGAACTGCTTTTTCATTATCATTGTGG TGTGCCGTCCTTTTTTTGTTTTATCGGAACGTTGGTAGACGTATTTCATA TAGCTTTCATACGCTCTTCCCCTTGCACCACACCGCCTGTCTGCATCGAA CCCCTCTTTCCTATTTTCGCCTCGAGCTCCCAGGCCTGTCCTTGGTCGGC GTTGAGCCCGTAAAGGCCATGCGAGACCAATTCGAAGCAGCATTGCCAGG AGTTCGAGTCATCGAAGGCGGGTGCTGACAGGCGTGTGCCTGCGCTTGCT TGTTGGTTTCTGCGCGTGTGGCTTCTCAGCAAAACGTGCGCGGCTCTTGA TCTGCCGCGTTTTTAGGCTGCATCCGACCACTGATGTGGCTGCTGCCCAC GCTCCGGGTTGGTCGAGATGAAATATTGAGGAATTGTTAGAGGGTTTCAT TTAAAAAACAAGTGCAGCCGGGGATAGTCGTACTTATGGCAGACATGCAT GGCTAATGCACAGCTGTTGTCCCCTTTTGTGTGCACAGCAGTGCTCGGCC TCTGGCCCTTGAGTAGTAAACCCCCCTTGCGAATTTACATGAGAGTGGTG AGATTTGGCACGTGAGCTGCTTTTCTCGTGTGTGCGTTTGCCCGCCCCCG GTGTCGCGGCTCAGGTACCGGAGAGGCCATTCCTGTGCCGGATTCCTCAG CTCGGGCCTTGATCGCGGCCCAAAGCTTCCACTGGATGTCTTCGCCGGCG ACGCTGCGCCAGGTGCACCGAGTACTCGTACCGGGGAGCTTGTTCGCGCT CGTGTGGAACACCCGCGACTACACGGTACCCTGGGTGCGGTAAGACGCGC AGCGCTTGCTTTGCGACCAGCGCGGCGAGATAATGTCGGGGAAGGTCTAC TGGTTGCATACTCTTGAGCGCTTGCACCGCGGCCATGAGAACCCGTTATT GTGGTGATGGATATGTACGTGCATGTCCAAATGCATCCAAATATAGCGGC CTGTTCCGCGGGCGAGGATCCGGTGGGGTTTTCTATGAGTCCAAGGCGTG ATGGGGCGACGGGGCTCTCTGGTCGTGCTGGTTGGTCCTTCACTCTCGCC CTGCCCCCTGCTGCTCTTTTTCGATGTTTGCTTTCTTTTTGCTCCCCGCG CGCCTGCTGTTTTTGCGTTTCAGAGCTCTCGAGGACATTATTGACCCGTT CTACGGCGACGATGTGCCTAGGCAGCACGGCGGAACTTGGAGACAGTCCT TCCGAGACCTGGAACAGTCTAGGTCAGGGGTTCCTCTATTTTCGGGGCGA ATGACAAATTCTTGTTTTTTTTGTCGTCTCATCTGTTCTGTGTTCTGTAA TCTCTTCGAGTACGTGCATATAAACCTTAACAACATGCTGGGGGGACGCT TTGTTGATGATGGGTGGAGGGGGGGGGGGTACAAAACCGAGAACGGCAAC ACGCGCGCGGCATTTTCTAACGATTTCACGGGCGCATCCGACTGCGTTGC TCTCGGTTTTGTCAGTAGCGACGGCGGCAAAGAAACCGGAGGCGACGGGC GGCAGCGCCGATCGTTCTTCGGAGAGCTGACAGAGCAGCACTTTAAGCAC TCGCAGCTGCTGACCCCGGACGAGCTTGACGACCGGATGCGTAGCATCAG CGTTATCGCGACAAGGTGTGATGCGTAAATGTAAACAGCGTGTTCCAAGC GGCTTTGTCCGAGCGTGCTTGTTTTCTTCGCGGCAGATCGAACTGCGTTT TGACGAGCCTACGATTTTGCCCTGGGGCATGCCTGCTACTCAACCGGTAG TCTGGTTTTTGATGTATCCTGAGTGAGCACGTATGACGTCGTTAAGCCCT ACTTGTCCCAAAAGTAAAAGCGCCGTCTTTCCGTCCGAAGCAGCGTTGTC AGAAGAGATTTTGTTTGTACCCTGAGATATTTGCGGTCTAGTCTACACAC TTCACGGACCTCACCGAAAGAAAGGTTGGTGCGATCAGCGTCGACAACGA CGGTAACCAAATGTTTTAAGTGTTTCCTTCGTTCATGCCCCCCCCGCCCG ACCGCCTTCACGGCCGGCCGCACCGAATAGGCCCGAGCCTGAGAGGGCGG AAGCCTCGCGCCGCGCTCGAGAGCTTGTGGAGACGCATCCAGACACTCAG CAAGAACTGCGCAAGAGCGGAAGGGTGGAACTGTTCTACGACACGGAGGT GTACTGGTGCCGCAAGCTAGACTACCCGTGTTCACAGTAATGGTGCGAAA GGAGAAGGGTCTTTTTTTCTGTGCGCTGCTGCTTGGTGGAAGCAGCGTGC CTCGGAAGTGTGCGTGGTTGGCAAAGACTACTGTTGTGACCAGATCTGCA CGAAGTGATCACTCGGCGAAGTCGGCAACCCGCGAGAATTGAGTTACCGC GTCGAAAAAGTTATTTCGTTTATTATTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5473:1510..5688+

>mRNA_L-elsbetiae_contig5473.13735.1 ID=mRNA_L-elsbetiae_contig5473.13735.1|Name=mRNA_L-elsbetiae_contig5473.13735.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2016bp|location=Sequence derived from alignment at L-elsbetiae_contig5473:1510..5688+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAATCCTTCTGTGGCCGTGCGCGTGGCCCGGCAGAGCGGTTGGCACT
GCTACCGCTGCCATGGTTCCGGTGTGGCTTTGTTCCGCCTGCGACGAAGG
AAAGCTGCAGGCGGGTGCACACGGAAGCTGCGGGCGGTTTCGGGGGAAGC
AACGCCTCGTTTTACGAAAAGTCAAGATGCAATCCTTCTGTGGCCGTGCG
CGTGGCCCGGCAGAGCGGTTGGCACTGCTACCGCTGCCATGGTTCCGGTG
TGGCTTTGTTCCGCCTGCGACGAAGGAAAGCTGCAGGCGGGTGCACACGG
AAGCTGCGGGCGGTTTCGGGGGAAGCAACGCCTCGTTTTACGAAAAGTCA
AGGCCAGGGTATCCCGCCCAGGCGCTGAGAGCAATCGAGGCTGAGATACG
GCGAGGCGGGTGTATCAGACGGGTCGAGAGCGGTTCCAGCGACGGCAACG
ACATCGTTGATCTCGGCTGCGGCACGGGGAAGTTCACGCGCGAAATCCTT
CCGTTCGCTCGCTCAGAAGGCCAGGGTATCCCGCCCAGGCGCTGAGAGCA
ATCGAGGCTGAGATACGGCGAGGCGGGTGTATCAGACGGGTCGAGAGCGG
TTCCAGCGACGGCAACGACATCGTTGATCTCGGCTGCGGCACGGGGAAGT
TCACGCGCGAAATCCTTCCGTTCGCTCGCTCAGAAGGCCTGTCCTTGGTC
GGCGTTGAGCCCGTAAAGGCCATGCGAGACCAATTCGAAGCAGCATTGCC
AGGAGTTCGAGTCATCGAAGGCCTGTCCTTGGTCGGCGTTGAGCCCGTAA
AGGCCATGCGAGACCAATTCGAAGCAGCATTGCCAGGAGTTCGAGTCATC
GAAGGTACCGGAGAGGCCATTCCTGTGCCGGATTCCTCAGCTCGGGCCTT
GATCGCGGCCCAAAGCTTCCACTGGATGTCTTCGCCGGCGACGCTGCGCC
AGGTGCACCGAGTACTCGTACCGGGGAGCTTGTTCGCGCTCGTGTGGAAC
ACCCGCGACTACACGGTACCCTGGGTGCGGTACCGGAGAGGCCATTCCTG
TGCCGGATTCCTCAGCTCGGGCCTTGATCGCGGCCCAAAGCTTCCACTGG
ATGTCTTCGCCGGCGACGCTGCGCCAGGTGCACCGAGTACTCGTACCGGG
GAGCTTGTTCGCGCTCGTGTGGAACACCCGCGACTACACGGTACCCTGGG
TGCGAGCTCTCGAGGACATTATTGACCCGTTCTACGGCGACGATGTGCCT
AGGCAGCACGGCGGAACTTGGAGACAGTCCTTCCGAGACCTGGAACAGTC
TAGAGCTCTCGAGGACATTATTGACCCGTTCTACGGCGACGATGTGCCTA
GGCAGCACGGCGGAACTTGGAGACAGTCCTTCCGAGACCTGGAACAGTCT
AGCGACGGCGGCAAAGAAACCGGAGGCGACGGGCGGCAGCGCCGATCGTT
CTTCGGAGAGCTGACAGAGCAGCACTTTAAGCACTCGCAGCTGCTGACCC
CGGACGAGCTTGACGACCGGATGCGTAGCATCAGCGTTATCGCGACAAGC
GACGGCGGCAAAGAAACCGGAGGCGACGGGCGGCAGCGCCGATCGTTCTT
CGGAGAGCTGACAGAGCAGCACTTTAAGCACTCGCAGCTGCTGACCCCGG
ACGAGCTTGACGACCGGATGCGTAGCATCAGCGTTATCGCGACAAGGCCC
GAGCCTGAGAGGGCGGAAGCCTCGCGCCGCGCTCGAGAGCTTGTGGAGAC
GCATCCAGACACTCAGCAAGAACTGCGCAAGAGCGGAAGGGTGGAACTGT
TCTACGACACGGAGGTGTACTGGTGCCGCAAGCTAGACTACCCGTGTTCA
CAGTAAGCCCGAGCCTGAGAGGGCGGAAGCCTCGCGCCGCGCTCGAGAGC
TTGTGGAGACGCATCCAGACACTCAGCAAGAACTGCGCAAGAGCGGAAGG
GTGGAACTGTTCTACGACACGGAGGTGTACTGGTGCCGCAAGCTAGACTA
CCCGTGTTCACAGTAA
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