mRNA_L-elsbetiae_contig5470.13733.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5470.13733.1
Unique NamemRNA_L-elsbetiae_contig5470.13733.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5470.13733.1 vs. uniprot
Match: A0A6H5LEA9_9PHAE (DAO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LEA9_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.010e-30
Identity = 80/109 (73.39%), Postives = 87/109 (79.82%), Query Frame = 3
Query:  171 MRHLKVLVLCSCAIGGPR---TSAFLLSVSSPAAGRSIRPLAMLGSTSSDVRIQKDVVVIGGGLAGLSTALELAKRGRQVTVVSRNRAEAAAEAAGGMIAPQAERLESG 488
            MR L+ L +C CA+ G R   + AFLLS      GR  R + MLGST SDVRI KDVVVIGGGLAGLSTALELAKRG+QVTV+SRNRAEAAAEAAGGMIAPQAERLESG
Sbjct:    1 MRLLQQLSVC-CAVIGSRAWTSQAFLLS---SGVGRLSRSMVMLGSTISDVRIHKDVVVIGGGLAGLSTALELAKRGKQVTVLSRNRAEAAAEAAGGMIAPQAERLESG 105          
BLAST of mRNA_L-elsbetiae_contig5470.13733.1 vs. uniprot
Match: A0A7S4DFW4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFW4_HETAK)

HSP 1 Score: 72.0 bits (175), Expect = 2.160e-13
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 3
Query:  318 IQKDVVVIGGGLAGLSTALELA-KRGRQVTVVSRNRAEAAAEAAGGMIAPQAERL 479
            IQ+DV+VIGGGLAGLS A ELA K GRQVTV+SR+  EAAA AA GM+APQAERL
Sbjct:   55 IQRDVLVIGGGLAGLSVAYELASKHGRQVTVLSRDAEEAAARAAAGMLAPQAERL 109          
BLAST of mRNA_L-elsbetiae_contig5470.13733.1 vs. uniprot
Match: W7U8T7_9STRA (Glycine oxidase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U8T7_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.710e-13
Identity = 41/54 (75.93%), Postives = 50/54 (92.59%), Query Frame = 3
Query:  327 DVVVIGGGLAGLSTALELAKRGRQVTVVSRNRAEAAAEAAGGMIAPQAERLESG 488
            DV+VIGGGLAGLSTALEL++RG +V VVSR+ AE+A+ AAGGM+APQAERLE+G
Sbjct:   79 DVLVIGGGLAGLSTALELSQRGAKVVVVSRDEAESASMAAGGMLAPQAERLEAG 132          
BLAST of mRNA_L-elsbetiae_contig5470.13733.1 vs. uniprot
Match: A0A4D9DFC1_9STRA (DAO domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFC1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.980e-13
Identity = 41/54 (75.93%), Postives = 50/54 (92.59%), Query Frame = 3
Query:  327 DVVVIGGGLAGLSTALELAKRGRQVTVVSRNRAEAAAEAAGGMIAPQAERLESG 488
            DV+VIGGGLAGLSTALEL++RG +V VVSR+ AE+A+ AAGGM+APQAERLE+G
Sbjct:   11 DVLVIGGGLAGLSTALELSQRGAKVVVVSRDEAESASMAAGGMLAPQAERLEAG 64          
BLAST of mRNA_L-elsbetiae_contig5470.13733.1 vs. uniprot
Match: A0A8J2WY37_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WY37_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 9.310e-13
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 3
Query:  225 TSAFLLSVSSPAAGRSIRPLAMLGSTSSDVRIQKDVVVIGGGLAGLSTALELAKRGRQVTVVSRNRAEAAAEAAGGMIAPQAERLESG 488
            T  F L V++ AA   +RP     ST+  +    DVVV+GGG++GL+TALELA+RGR V VVSR+ A++A  AAGGM+APQAERLE G
Sbjct:    2 TLRFALLVTTAAA---LRPTQTRVSTTKKL----DVVVVGGGISGLATALELARRGRSVRVVSRDLAKSATLAAGGMLAPQAERLEEG 82          
BLAST of mRNA_L-elsbetiae_contig5470.13733.1 vs. uniprot
Match: F0YGW8_AURAN (Mitogen-activated protein kinase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGW8_AURAN)

HSP 1 Score: 71.2 bits (173), Expect = 2.210e-11
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 3
Query:  258 AAGRSIRPLAMLGSTSSDVRIQKDVVVIGGGLAGLSTALELAKRGRQVTVVSRNRAEAAAEAAGGMIAPQAERLESG 488
            AA R+  P A L S+++      DVVV+GGG++GLSTALEL +RGR V V+SR+ A+AA  AAGGM+APQAERL  G
Sbjct:   14 AALRAPAPRASLRSSTA-----YDVVVVGGGMSGLSTALELRRRGRSVCVLSRDLAQAATLAAGGMLAPQAERLPGG 85          
BLAST of mRNA_L-elsbetiae_contig5470.13733.1 vs. uniprot
Match: UPI0002483A50 (glycine oxidase ThiO n=1 Tax=Acaryochloris sp. CCMEE 5410 TaxID=310037 RepID=UPI0002483A50)

HSP 1 Score: 65.5 bits (158), Expect = 1.720e-9
Identity = 34/54 (62.96%), Postives = 46/54 (85.19%), Query Frame = 3
Query:  327 DVVVIGGGLAGLSTALELAKRGRQVTVVSRNRAEAAAEAAGGMIAPQAERLESG 488
            +V+VIGGGL GL+TA+ELA++G +VTV++R   EAA ++A GM+APQAERL SG
Sbjct:    6 EVLVIGGGLIGLATAVELAQQGVEVTVITRKLCEAATQSAAGMLAPQAERLSSG 59          
BLAST of mRNA_L-elsbetiae_contig5470.13733.1 vs. uniprot
Match: R1BK16_EMIHU (DAO domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BK16_EMIHU)

HSP 1 Score: 63.9 bits (154), Expect = 5.780e-9
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 3
Query:  321 QKDVVVIGGGLAGLSTALELAKRGRQVTVVSRNRAEAAAEAAGGMIAPQAERLESG 488
            ++  +V+GGG +GLS ALELA RG  V+V+SR+ +E A  AAGGM+APQAERLE G
Sbjct:    1 RRSALVVGGGASGLSCALELAGRGWSVSVLSRDTSEGATRAAGGMLAPQAERLEEG 56          
BLAST of mRNA_L-elsbetiae_contig5470.13733.1 vs. uniprot
Match: A0A8J7FBX8_9CYAN (FAD-dependent oxidoreductase (Fragment) n=1 Tax=Plectonema cf. radiosum LEGE 06105 TaxID=945769 RepID=A0A8J7FBX8_9CYAN)

HSP 1 Score: 60.1 bits (144), Expect = 9.110e-9
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 3
Query:  327 DVVVIGGGLAGLSTALELAKRGRQVTVVSRNRAEAAAEAAGGMIAPQAERL 479
            D+++IGGG+ GL+TA+EL  RG +VT +SRN   AAA AA GM+AP AER+
Sbjct:    4 DILIIGGGVIGLATAIELKLRGAKVTAISRNHKAAAATAAAGMLAPSAERI 54          
BLAST of mRNA_L-elsbetiae_contig5470.13733.1 vs. uniprot
Match: A0A2T1CZ24_9CYAN (Thiazole synthase (Fragment) n=1 Tax=filamentous cyanobacterium CCP2 TaxID=2107700 RepID=A0A2T1CZ24_9CYAN)

HSP 1 Score: 59.7 bits (143), Expect = 1.220e-8
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 3
Query:  324 KDVVVIGGGLAGLSTALELAKRGRQVTVVSRNRAEAAAEAAGGMIAPQAERLES 485
            KDVV++GGG+ GLS A+EL  RG  VTV+SR+  +AAA AA GM+AP AE + S
Sbjct:    5 KDVVIVGGGIVGLSIAVELKLRGATVTVLSRDAQQAAAYAAAGMLAPAAENISS 58          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5470.13733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LEA9_9PHAE1.010e-3073.39DAO domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S4DFW4_HETAK2.160e-1376.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7U8T7_9STRA3.710e-1375.93Glycine oxidase n=2 Tax=Nannochloropsis gaditana T... [more]
A0A4D9DFC1_9STRA3.980e-1375.93DAO domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A8J2WY37_9STRA9.310e-1355.68Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
F0YGW8_AURAN2.210e-1158.44Mitogen-activated protein kinase n=1 Tax=Aureococc... [more]
UPI0002483A501.720e-962.96glycine oxidase ThiO n=1 Tax=Acaryochloris sp. CCM... [more]
R1BK16_EMIHU5.780e-960.71DAO domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A8J7FBX8_9CYAN9.110e-958.82FAD-dependent oxidoreductase (Fragment) n=1 Tax=Pl... [more]
A0A2T1CZ24_9CYAN1.220e-859.26Thiazole synthase (Fragment) n=1 Tax=filamentous c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5470contigL-elsbetiae_contig5470:8893..9380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue8.6e-24
Seed eggNOG ortholog2880.D7G5B9
KEGG rclassRC00060,RC00557
KEGG koko:K00314
KEGG ReactionR00611
KEGG Pathwayko00260,ko01100,map00260,map01100
Hectar predicted targeting categorychloroplast
EggNOG free text desc.oxidoreductase activity, acting on the CH-NH group of donors, flavin as acceptor
EggNOG OGsCOG0404@1,KOG2844@2759
EC1.5.8.3
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size490
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.0696125-UTR-L-elsbetiae_contig5470:8892..90621622816574.0696125-UTR-L-elsbetiae_contig5470:8892..9062Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5470 8893..9062 +
1691683657.28585-UTR-L-elsbetiae_contig5470:8892..90621691683657.28585-UTR-L-elsbetiae_contig5470:8892..9062Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5470 8893..9062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.0840492-CDS-L-elsbetiae_contig5470:9062..93801622816574.0840492-CDS-L-elsbetiae_contig5470:9062..9380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5470 9063..9380 +
1691683657.2997177-CDS-L-elsbetiae_contig5470:9062..93801691683657.2997177-CDS-L-elsbetiae_contig5470:9062..9380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5470 9063..9380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5470.13733.1prot_L-elsbetiae_contig5470.13733.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5470 9063..9380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5470.13733.1

>prot_L-elsbetiae_contig5470.13733.1 ID=prot_L-elsbetiae_contig5470.13733.1|Name=mRNA_L-elsbetiae_contig5470.13733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MRHLKVLVLCSCAIGGPRTSAFLLSVSSPAAGRSIRPLAMLGSTSSDVRI
QKDVVVIGGGLAGLSTALELAKRGRQVTVVSRNRAEAAAEAAGGMIAPQA
ERLESG
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mRNA from alignment at L-elsbetiae_contig5470:8893..9380+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5470.13733.1 ID=mRNA_L-elsbetiae_contig5470.13733.1|Name=mRNA_L-elsbetiae_contig5470.13733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=488bp|location=Sequence derived from alignment at L-elsbetiae_contig5470:8893..9380+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTCCAGGAATACAGAAATGAGGGGGGGGGGCATCTATCTTTCGACCCC CGCTCCGCAGACGACGGACCCGACTGGACTGCGCGACAAGTGATCGTACT GCTATACACGTGCTAAGTTAGGGAAAGCGAGAGAGGACCTGGCGGGTGGT CACCAGCCGCGCACAGCACCATGCGGCACCTGAAAGTATTAGTGCTGTGT TCATGTGCGATCGGCGGCCCACGGACGAGTGCCTTCCTGCTCTCCGTGTC GTCGCCAGCAGCAGGACGGTCAATACGGCCTTTGGCGATGCTCGGATCCA CCTCATCTGACGTTCGTATTCAGAAGGACGTGGTCGTCATCGGGGGTGGC CTCGCTGGACTTTCTACGGCTTTGGAGCTGGCAAAGCGAGGACGGCAGGT GACGGTTGTTTCTCGCAATCGTGCGGAAGCGGCAGCCGAGGCAGCGGGGG GCATGATTGCTCCTCAGGCAGAGCGGCTGGAGAGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5470:8893..9380+

>mRNA_L-elsbetiae_contig5470.13733.1 ID=mRNA_L-elsbetiae_contig5470.13733.1|Name=mRNA_L-elsbetiae_contig5470.13733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig5470:8893..9380+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGCACCTGAAAGTATTAGTGCTGTGTTCATGTGCGATCGGCGGCCC
ACGGACGAGTGCCTTCCTGCTCTCCGTGTCGTCGCCAGCAGCAGGACGGT
CAATACGGCCTTTGGCGATGCTCGGATCCACCTCATCTGACGTTCGTATT
CAGAAGGACGTGGTCGTCATCGGGGGTGGCCTCGCTGGACTTTCTACGGC
TTTGGAGCTGGCAAAGCGAGGACGGCAGGTGACGGTTGTTTCTCGCAATC
GTGCGGAAGCGGCAGCCGAGGCAGCGGGGGGCATGATTGCTCCTCAGGCA
GAGCGGCTGGAGAGCGGGATGCGGCACCTGAAAGTATTAGTGCTGTGTTC
ATGTGCGATCGGCGGCCCACGGACGAGTGCCTTCCTGCTCTCCGTGTCGT
CGCCAGCAGCAGGACGGTCAATACGGCCTTTGGCGATGCTCGGATCCACC
TCATCTGACGTTCGTATTCAGAAGGACGTGGTCGTCATCGGGGGTGGCCT
CGCTGGACTTTCTACGGCTTTGGAGCTGGCAAAGCGAGGACGGCAGGTGA
CGGTTGTTTCTCGCAATCGTGCGGAAGCGGCAGCCGAGGCAGCGGGGGGC
ATGATTGCTCCTCAGGCAGAGCGGCTGGAGAGCGGG
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