prot_L-elsbetiae_contig5463.13722.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5463.13722.1
Unique Nameprot_L-elsbetiae_contig5463.13722.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length829
Homology
BLAST of mRNA_L-elsbetiae_contig5463.13722.1 vs. uniprot
Match: D7FHJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ2_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 9.540e-84
Identity = 157/382 (41.10%), Postives = 225/382 (58.90%), Query Frame = 0
Query:  129 YGI-NIDGGNR-IRQPMSEMIREASKGTGIHSIINTGYYRLRHEVLQARDQPDIKTRLAEASKQVGFELTPFQVETIGRAVWRPRTTLKVDYTIGTLKSPK-HVSRRFSSPSSDIGSPVLVDLPPGTGKTIVCVIACFLVPLERSNEILDQAARYSSQGFAEECVSAPKPHGGRVSMIFVPKHVHHQWMAAAHKAIDILITMYPNKVLFLGQNKRASEVGKAELDAGVVICDSASFGLAKALESKTKYGALCFDESTENCDVKNNAVYSQVPYDLSYGRAILISADFSKMSDDNSKC-PARPGTMLRKIFGDAAKNHYRRAFWVSQDDYYFGKSDSDA-GCKVTATLTMNAVFPANKRAEVVGACSDLLKDVSLYTFGIKYK 505
            YG+ + +GG+R ++  M++M+R A++G G+HSII+   Y + H V   R    +K  L ++S   GFELTP QVETI   VWRP + + V Y +     P   V R+F SP SD+GSPV +DLPPG  KTIV  I   L+ +ER +E+         +G  E     P               +H        KA +I+ +MYP++   +G NK A  + + + D  +++CDS+SFG  KAL +   YG+LCFDE T+NCD+KNNAVYS VP  + YGR +LISADFSKM++ NSK   +R G+M+R++FG+        A       Y +G++ +   G  + A LTMNAVFP ++R  VVG  +DL+ DV+L+TFGI Y+
Sbjct:    6 YGLPSPEGGSRSLKCSMADMVRSAARGCGLHSIIDCERYTITHHVSDDRHMSGVKDALKKSSASHGFELTPIQVETIVNCVWRPTSRVNVGYDVRRDGHPSTRVVRKFMSPVSDMGSPVFIDLPPGMEKTIVAPIVSLLLSVERMDEVCPHMQHGVHRGGGEGAGRGPS--------------LHDPTNGCLTKAANIMSSMYPSERFVVGANKIAESLSREDFDFALIVCDSSSFGPTKALSASVAYGSLCFDECTDNCDIKNNAVYSIVPSSMIYGRLLLISADFSKMTEYNSKMGSSRKGSMIRRVFGNNQSLEMAHAIKGRLGSYAYGENATTTRGAPLVACLTMNAVFPRDQRETVVGTSADLISDVNLHTFGISYR 373          
BLAST of mRNA_L-elsbetiae_contig5463.13722.1 vs. uniprot
Match: D8LPJ1_ECTSI (EsV-1-172 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPJ1_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 9.000e-23
Identity = 149/661 (22.54%), Postives = 276/661 (41.75%), Query Frame = 0
Query:  195 LTPFQVETIGRAVWRPRTTLKVDYTIGTLKSPKHVSRR---------FSSPSSDIGSPVLVDLPPGTGKTIVCVIACFLVPLERSNEI------LDQAARYSSQGFAEECVSAPK--------PHGGRVSMIFVPKHVHHQWMAAAHKAIDILITMYPNKVLFLGQNKRASEVGKAELDAGVVICDSASFGLAKALESKTKYGALCFDESTENCDVKNNAVYSQVPYDLS--YGRAILISADFSKMSDDNSKCPARPGTMLRKIFGDAAKNHYRRAFWVSQDDYYFGKSDSDAGCKVTATLTMNAVFPANKRAEVVGACSDLLKDVSLYTFGIKYKKSVLERLGNAAANDLTSVDGNQRFKDAVGVDISGCETIDDIIVKLTKIVEASKQPRMRTR---PKVEFGLRVLKQVVD-EPCPICDEPIEE---ARIMQPCFHVICEVCLQRLQS---DTCPFCRKVIESTLSSSESIQAPTSVAAPAPDAPSTSPTSFGEAFKEIITHAIPKNDGSFTMQATMDVILRSLRDAHARVGGGTFRVVVVCAQ--------VDLNTTGFGSEGYTIIRYKTAGTTEEPVTRKKLVDQLEKFQKEDGEKKLMLVHDETSGSGSADGETSRRDDNITGMDFPKLEAVVSIGPENRSQRVGRLCRMSRVF 812
            L PFQ++ I    +RP  T      + T    +    R           S   DIG   + DL  G+GKT+  V+   +   +R  EI      L +   + +     +C  + +        P    V ++   KH+  QW +A   A+ IL  M   +VL   +N        +     V++  SA+      LE       +  DE T    +K+ +     P +    +GR IL+SAD   + D               I G   ++  R+        Y+    ++         L   +V     R  V     + L++V    + ++Y  S   R+  +   ++++V G++  ++  G+D++G +TI  ++  ++  ++  +     +R   P  +   ++   V + E CPIC E  E    A ++ PC+H++C+ CL+ + +   DTCP CR  +E   ++    Q+  +  A +P   +   T+   +  + +   +    G    +A +D    +LR   A VG   +++V++           +D+      S+   II +KT G   + VT K + DQL  F  + G    +L         + +G+T    D++TG+DFP+++ ++S+G  N  QR+GRL R+ R+ 
Sbjct:  107 LLPFQIQAILNMAFRPSHTFVAKTILRTSTYGRQEQNRTETQVGTSVLKSFDDDIGMMAINDLYTGSGKTLTTVLGAIVFADKRRAEIGARVPFLMREQVHGNWSTRVQCALSKEHQRSPNTFPTYTNVIVVMCAKHLLSQWKSACASALHIL-GMEEVQVL---ENPLPGSTELSNASLKVLLLHSAANLTRLDLEFVP---VIVVDEFT----IKSTSNVLTKPAETMPLHGRMILVSADAGNVRD--------------MIHGSNRRSFLRKMLQWDDISYF---PEAHIAMVAGIPLISASVLQTTDRYAVGELMINKLREVGYEKYTVRYTPSFASRIFGSNF-EMSAVSGSRLIRERFGIDLAGTKTIGQVLRIVSNTIDNLRTTDANSRAIAPLTDLRNKISAFVGEKEDCPICLEEYEMDSGASLINPCWHIVCDKCLRAMMAVKHDTCPLCRVKMEGHTTAVIDDQSSVASGASSPGQNTRIETNSRLSLLQNMEAVLRPTAG--LEKACID----TLRCIKADVGDQPYKIVMIVPDEHFFTKFAIDVREEMTASQ-IGIIEFKTIGNKRKHVTGKMVCDQLASFASDRGPPLKILF--------TTEGKT----DSLTGLDFPRVDCILSLGDGNSLQRLGRLTRLPRMM 719          
BLAST of mRNA_L-elsbetiae_contig5463.13722.1 vs. uniprot
Match: Q8QNB5_ESV1K (EsV-1-172 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB5_ESV1K)

HSP 1 Score: 115 bits (287), Expect = 1.390e-22
Identity = 152/673 (22.59%), Postives = 278/673 (41.31%), Query Frame = 0
Query:  195 LTPFQVETIGRAVWRPRTTLKVDYTIGTLKSPKHVSRR---------FSSPSSDIGSPVLVDLPPGTGKTIVCVIACFLVPLERSNEI------LDQAARYSSQGFAEECVSAPK--------PHGGRVSMIFVPKHVHHQWMAAAHKAIDILITMYPNKVLFLGQNKRASEVGKAELDAGVVICDSASFGLAKALESKTKYGALCFDESTENCDVKNNAVYSQVPYDLS--YGRAILISADFSKMSDDNSKCPARPGTMLRKIFGDAAKNHYRRAFWVSQDDYYFGKSDSDAGCKVTATLTMNAVFPANKRAEVVGACSDLLKDVSLYTFGIKYKKSVLERL-GNAAANDLTSVDGNQRFKDAVGVDISGCETIDDIIVKLTKIVEASKQPRMRTR---PKVEFGLRVLKQVVD-EPCPICDEPIEE---ARIMQPCFHVICEVCLQRLQS---DTCPFCRKVIESTLSSSESIQAPTSVAAPAPDAPSTSPTSFGEAFKEIITHAIPKNDGSFTMQATMDVILR-----------SLRDAHARVGGGTFRVVVVCAQVDLNTTGFGSE--------GYTIIRYKTAGTTEEPVTRKKLVDQLEKFQKEDGEKKLMLVHDETSGSGSADGETSRRDDNITGMDFPKLEAVVSIGPENRSQRVGRLCRMSRVF 812
            L PFQV+ +    +RPR T        T    +H               S   DIG   + DL  G+GKT+  ++   +   +R  EI      L +   + +     +C  + +        P    V ++   KH+  QW +A   A+ +L  M   +VL   +N     +  +++   +V+  SA+      LE       +  DE T    +K+ +     P ++   +GR IL+SAD   + D               I   + +  + R      D  YF   ++         L   +V     R  V     + L++V    + ++Y  S   R+ GN    ++++V G++   +  G++++G ++I  ++  ++  ++  +     +R   P  +   ++   V + E CPIC E  E    A ++ PC+H++C+ CL+ + +   DTCP CR  +E   ++   I     VA+ A        +S G+       +   +     ++   MD +LR           +LR   A VG   +++V++       T  F ++           II +KT G   + VT K + DQL  F    G    +L         + +G+T    D++TG+DFP+++ ++S+G  N  QR+GRL R+ R+ 
Sbjct:  179 LLPFQVQAVLNMAFRPRNTFVAKTIFRTRNYGRHEQNHTETQVGTNVLKSFDDDIGMMAINDLYTGSGKTLTTILGAIVFADKRRAEIGARVPFLMREQVHGNWSTRVQCSLSKEHQRPPNNFPSYTNVIVVMCAKHLFSQWKSACASALHVL-GMEGVQVL---ENPLPGSIQLSDVGLKIVLLHSATNLARLELEFVP---VIVVDEFT----IKSASNVLTKPAEIMPLHGRMILVSADAGNVKD---------------IIHGSNRRSFLRKMLQWDDISYF--PEAHIAMVAGIPLISASVLQTTDRYAVGELMINKLREVGYEKYTVRYTPSFASRIFGNNF--EMSAVSGSRLISERFGINLTGTKSIGQVLRIVSNTIDNLRTTDANSRTIAPLTDLKNKISAFVGEKENCPICLEEYEMDSGASLINPCWHIVCDKCLRAMMAVKHDTCPLCRVKMEGHTTAV--IDDRIGVASDA--------SSRGQ-------NTRVETSSRLSLLQNMDAVLRPTAGLEKACVDTLRCIKADVGDQPYKIVMIVPDEHFFTK-FANDVREEMTASQIGIIEFKTIGNKRKHVTGKMVSDQLASFASNRGPPMKILF--------TTEGKT----DSLTGLDFPRVDCILSLGDGNSLQRLGRLTRLPRMM 791          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5463.13722.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHJ2_ECTSI9.540e-8441.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPJ1_ECTSI9.000e-2322.54EsV-1-172 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QNB5_ESV1K1.390e-2222.59EsV-1-172 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 583..619
e-value: 4.5E-4
score: 29.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 583..620
score: 12.224
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 573..641
e-value: 2.9E-9
score: 38.3
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 580..625
e-value: 7.0E-9
score: 35.4
NoneNo IPR availablePANTHERPTHR45626:SF22DNA REPAIR PROTEIN RAD5coord: 566..650
NoneNo IPR availablePANTHERPTHR45626FAMILY NOT NAMEDcoord: 566..650
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 577..625
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 599..608
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 164..410

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5463contigL-elsbetiae_contig5463:3393..7157 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5463.13722.1mRNA_L-elsbetiae_contig5463.13722.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5463 2370..7207 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5463.13722.1 ID=prot_L-elsbetiae_contig5463.13722.1|Name=mRNA_L-elsbetiae_contig5463.13722.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=829bp
MDAVPDTDVEPDSDVEEVEWHGIIENSSVGGNSGAAGSERRASGVNAPLP
PVPSENRYSEGGGGEGREGTAASPMEISSDSDSPDGNSSGVEENIGRESK
NSGGDGENSRDIEDTSEEDPIYTGLGTTYGINIDGGNRIRQPMSEMIREA
SKGTGIHSIINTGYYRLRHEVLQARDQPDIKTRLAEASKQVGFELTPFQV
ETIGRAVWRPRTTLKVDYTIGTLKSPKHVSRRFSSPSSDIGSPVLVDLPP
GTGKTIVCVIACFLVPLERSNEILDQAARYSSQGFAEECVSAPKPHGGRV
SMIFVPKHVHHQWMAAAHKAIDILITMYPNKVLFLGQNKRASEVGKAELD
AGVVICDSASFGLAKALESKTKYGALCFDESTENCDVKNNAVYSQVPYDL
SYGRAILISADFSKMSDDNSKCPARPGTMLRKIFGDAAKNHYRRAFWVSQ
DDYYFGKSDSDAGCKVTATLTMNAVFPANKRAEVVGACSDLLKDVSLYTF
GIKYKKSVLERLGNAAANDLTSVDGNQRFKDAVGVDISGCETIDDIIVKL
TKIVEASKQPRMRTRPKVEFGLRVLKQVVDEPCPICDEPIEEARIMQPCF
HVICEVCLQRLQSDTCPFCRKVIESTLSSSESIQAPTSVAAPAPDAPSTS
PTSFGEAFKEIITHAIPKNDGSFTMQATMDVILRSLRDAHARVGGGTFRV
VVVCAQVDLNTTGFGSEGYTIIRYKTAGTTEEPVTRKKLVDQLEKFQKED
GEKKLMLVHDETSGSGSADGETSRRDDNITGMDFPKLEAVVSIGPENRSQ
RVGRLCRMSRVFMPEKERDAVYVELVGV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR027417P-loop_NTPase