mRNA_L-elsbetiae_contig54.13616.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig54.13616.1
Unique NamemRNA_L-elsbetiae_contig54.13616.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig54.13616.1 vs. uniprot
Match: A0A6H5KBL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL1_9PHAE)

HSP 1 Score: 440 bits (1132), Expect = 3.320e-146
Identity = 304/353 (86.12%), Postives = 316/353 (89.52%), Query Frame = 2 
Query:  131 MATRLAFTAISRARPQPLRISSALKAPARCFNPHAYPHRGVAAAHISSSACSRKSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GGSEAAADPSTGSDPS--DSXXXXXXXXXXXXXXXXXXSRGPLTWGAVGLLGIVATLAVGFYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTDKDYHGSFVLLYFGFCHCPDICPSELVKVGSIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLRHYAQDFHHSIEYLTGTKDQVAKAAKSYRVYFSKTEEHEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVDRTVKQVKDFK 1174
            MATRLA +A SRAR   LR    L AP RC    A P RG+AAA ISSS+CSR   XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXXX    GS A    +TGSDPS  ++ XXXXXXXXXXXXXXXXXSRGPLTWGAVGLLGIVA+LAVG+YRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVT+KDYHGSFVLLYFGFCHCPDICPSELVKVG+IATKLE KLGAGVVKPVFVSVDPDRDSLAQL+HYAQDFHHSIEYLTGTKDQVAKAAK+YRVYFSKTEEHEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVDRTVK VKDFK
Sbjct:    1 MATRLACSAASRARSSALRAGIRLNAP-RC---RADPSRGIAAALISSSSCSRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQXXXXXXXXXXXXXXXDAKAGSAAEPFSNTGSDPSSTNTGXXXXXXXXXXXXXXXXXSRGPLTWGAVGLLGIVASLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEDKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHSIEYLTGTKDQVAKAAKAYRVYFSKTEEHEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVDRTVKNVKDFK 349
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BLAST of mRNA_L-elsbetiae_contig54.13616.1 vs. uniprot
Match: D7FIM6_ECTSI (SCO1 homolog, cytochrome c oxidase copper chaperone n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIM6_ECTSI)

HSP 1 Score: 294 bits (753), Expect = 3.940e-90
Identity = 219/276 (79.35%), Postives = 226/276 (81.88%), Query Frame = 2 
Query:  131 MATRLAFTAISRARPQPLRISSALKAPARCFNPHAYPHRGVAAAHISSSACSRKSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GGSEAAADPSTGSDPSDSXXXXXXXXXXXXXXXXXX--SRGPLTWGAVGLLGIVATLAVGFYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTDKDYHGSFVLLYFGFCHCPDICPSELVKVGSIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLRHYAQDFHH 943
            MATRLA  A SRAR   LR   ALKAP RC    A P RG  AA ISSS+CSR   XXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXX    GS A    +TGSDPS +        XXXXXXXXXX  SRGPLTWGAVGLLGIVATLAVG+YRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVT+KDYHGSFVLLYFGFCHCPDICPSELVKVG+IATKLEGKLGAGVVKPVFVSVDPDRDSLAQL+HYAQDFHH
Sbjct:    1 MATRLACAAASRARSSALRAGIALKAP-RC---RADPSRGTVAALISSSSCSRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTQGGNIGXXXXXXXXXXDAKAGSAAEPLSNTGSDPSSTITRGADSSXXXXXXXXXXXXSRGPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHH 272
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BLAST of mRNA_L-elsbetiae_contig54.13616.1 vs. uniprot
Match: A0A835ZB06_9STRA (SCO1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB06_9STRA)

HSP 1 Score: 268 bits (686), Expect = 5.200e-81
Identity = 128/207 (61.84%), Postives = 162/207 (78.26%), Query Frame = 2 
Query:  548 RGPLTWGAVGLLGIVATLAVGFYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTDKDYHGSFVLLYFGFCHCPDICPSELVKVGSIATKLEGKLGAGV-VKPVFVSVDPDRDSLAQLRHYAQDFHHSIEYLTGTKDQVAKAAKSYRVYFSKTEEHEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVDRTVKQVK 1165
            R P+TW +VGL+GIV      +Y  + E++  +T S+VTS GKP LGGP+TLVDMHG P TDKDY GS+ LLYFGF HCPDICP+ELVK+G I  +   +L   V VKPVF+SVDPDRDSL QLR YA+DFH  ++YLTGTKDQVAKAA++YRVYFSK+ +HEE E+YL+DHSIV+YL+   G F+DF+TQR  + DCV+R VK+++
Sbjct:   55 RTPVTWASVGLVGIVGAGLAWYYTNEKEKRMTQTVSQVTSIGKPNLGGPWTLVDMHGVPKTDKDYLGSYTLLYFGFAHCPDICPAELVKLGHILQEASKQLKRPVPVKPVFISVDPDRDSLRQLRFYAKDFHPDVDYLTGTKDQVAKAARAYRVYFSKSADHEEDEEYLVDHSIVMYLVNDAGAFVDFYTQRMGVPDCVERLVKELR 261
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BLAST of mRNA_L-elsbetiae_contig54.13616.1 vs. uniprot
Match: A0A4D9DEH7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEH7_9STRA)

HSP 1 Score: 244 bits (623), Expect = 1.390e-72
Identity = 115/198 (58.08%), Postives = 149/198 (75.25%), Query Frame = 2 
Query:  554 PLTWGAVGLLGIVATLAVGFYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTDKDYHGSFVLLYFGFCHCPDICPSELVKVGSIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLRHYAQDFHHSIEYLTGTKDQVAKAAKSYRVYFSKTEEHEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVDR 1147
            P+TW  + ++ +  T    FY+++ E  Q +   +VTS GKPALGGP+TLVD  G+PVTD D+ G F+LLYFGF HCPDICPSELVKVG I   L+ +    VV+PVF+SVDPDRD++ QLRHYAQDFH  I YLTGT++Q+++  K+YRVYFSK +E +E E+YL+DHSIV+YL+ P+G FLDFFTQ    AD V+R
Sbjct:    2 PVTWIGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDFTGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDLLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQDFHPRILYLTGTEEQLSRMTKAYRVYFSKADEEDE-ENYLVDHSIVLYLIGPDGSFLDFFTQSMIPADIVNR 198
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BLAST of mRNA_L-elsbetiae_contig54.13616.1 vs. uniprot
Match: A0A7S3UQK5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQK5_HETAK)

HSP 1 Score: 225 bits (574), Expect = 5.070e-66
Identity = 109/165 (66.06%), Postives = 129/165 (78.18%), Query Frame = 2 
Query:  671 GKPALGGPFTLVDMHGKPVTDKDYHGSFVLLYFGFCHCPDICPSELVKVGSIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLRHYAQDFHHSIEYLTGTKDQVAKAAKSYRVYFSKTEEHEEGED-YLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVDRTVKQV 1162
            GKPALGGP+TLVD  G P TD D+ G +VLLYFGF  CPDICPSELVK+G I  +L+  L   + KPVF+SVDPDRDS+ QLR YA+DFH    YLTGTKDQV KAAK+YRVYFSK +EH+  +D YL+DHSIVIYLL P+G FLDFFTQ T + DC+ +TV+ V
Sbjct:    2 GKPALGGPWTLVDQDGFPRTDNDFLGQWVLLYFGFTRCPDICPSELVKIGKIVDELDKTLPVEI-KPVFISVDPDRDSVGQLRAYAKDFHPRFTYLTGTKDQVFKAAKAYRVYFSKADEHDLNDDEYLVDHSIVIYLLGPDGKFLDFFTQSTKVTDCIQKTVRHV 165
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BLAST of mRNA_L-elsbetiae_contig54.13616.1 vs. uniprot
Match: A0A7S2UVK0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVK0_9STRA)

HSP 1 Score: 228 bits (580), Expect = 3.070e-65
Identity = 111/211 (52.61%), Postives = 146/211 (69.19%), Query Frame = 2 
Query:  548 RGPLTWGAVGLLGIVATLAVGFYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTDKDYHGSFVLLYFGFCHCPDICPSELVKVGSIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLRHYAQDFHHSIEYLTGTKDQVAKAAKSYRVYFSKTEE--HEEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVDRTVKQVKDFK 1174
            RGP++W ++ L G V   A   Y  + +  + +  ++ T  G+P +GGPFTLVD  G P TD  + G FVLLYFGF  CPDICPSELVK+G IA  L+  +   V  PVF+SVDPDRD++ Q++ Y++DFH  + +LTGTK QV K +++YRVYFS  EE   E GEDYL+DHSIVIYL  P+G FLDFFTQ T + DCV R VK+++ +K
Sbjct:   76 RGPVSWASLTLAGFVGLGAWYVYNQEKQRMEEQALAKETIVGQPLIGGPFTLVDADGIPRTDAYFRGQFVLLYFGFTRCPDICPSELVKIGKIADALDNLVEERVT-PVFISVDPDRDTIKQIKEYSKDFHPRMHFLTGTKAQVEKVSRAYRVYFSSAEEVDWESGEDYLVDHSIVIYLNGPDGKFLDFFTQSTNVNDCVKRIVKRIQSYK 285
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BLAST of mRNA_L-elsbetiae_contig54.13616.1 vs. uniprot
Match: A0A662XZY4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZY4_9STRA)

HSP 1 Score: 223 bits (567), Expect = 2.970e-64
Identity = 107/201 (53.23%), Postives = 146/201 (72.64%), Query Frame = 2 
Query:  551 GPLTWGAVGLLGIVATLAVGFYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMH-GKPVTDKDYHGSFVLLYFGFCHCPDICPSELVKVGSIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLRHYAQDFHHSIEYLTGTKDQVAKAAKSYRVYFSKTEEHEEGED-YLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVDR 1147
            GP+TW  + L G+V + AV +Y  + +  Q +T S+VTS GKP LGGP+TLVD   G+ VTD  +HG   LLYFGF HCPDICP+ELV++G +  KL+ +    VV P+FV+VDP RD++AQ++ Y  DFH + + LTGT+DQVA  +K+YRVYFSK +E+EE +D YL+DHSIV+YL+ P+G+FLDFFTQ   + D   +
Sbjct:   21 GPITWSGLALAGVVGSGAVYYYYSEKDRLQTQTTSKVTSVGKPLLGGPWTLVDCDTGRAVTDASFHGKHTLLYFGFTHCPDICPNELVRIGEVLDKLQAENAPEVV-PLFVTVDPRRDTIAQMQIYKADFHPAFKMLTGTRDQVADISKAYRVYFSKADENEEDDDDYLVDHSIVMYLVGPDGEFLDFFTQSARVDDIATK 220
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BLAST of mRNA_L-elsbetiae_contig54.13616.1 vs. uniprot
Match: A0A7S3HFZ5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HFZ5_9STRA)

HSP 1 Score: 222 bits (565), Expect = 6.570e-64
Identity = 106/201 (52.74%), Postives = 144/201 (71.64%), Query Frame = 2 
Query:  548 RGPLTWGAVGLLGIVATLAVGFYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTDKDYHGSFVLLYFGFCHCPDICPSELVKVGSIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLRHYAQDFHHSIEYLTGTKDQVAKAAKSYRVYFSKTEEHE-EGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVDR 1147
            +GP+T+ ++    I     VG +  + + K+   A  + S GKPALGGP+ LVD  G P TD  Y G F LLYFGF  CPDICPSELVK+G+I   +E K    + +P+F+SVDP RD++ Q+++Y+QDFH SI YLTGT++QVA A+K+YRVYFSK  E+E + EDYL+DHSIV+YL++P+G+FLDFFTQ   + D VD+
Sbjct:    2 KGPVTFWSLAFTAITGVGLVGMFYAEKDRKEKARAKNIRSVGKPALGGPWVLVDQDGHPRTDASYDGKFRLLYFGFTFCPDICPSELVKIGNIVKSVEKKKITDL-QPIFISVDPSRDTVGQMKNYSQDFHPSIVYLTGTREQVATASKAYRVYFSKANENENDEEDYLVDHSIVLYLVSPSGEFLDFFTQSMEVKDIVDK 201
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BLAST of mRNA_L-elsbetiae_contig54.13616.1 vs. uniprot
Match: A0A2D4BK40_PYTIN (SCO1 family protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK40_PYTIN)

HSP 1 Score: 220 bits (561), Expect = 4.540e-63
Identity = 106/201 (52.74%), Postives = 141/201 (70.15%), Query Frame = 2 
Query:  551 GPLTWGAVGLLGIVATLAVGFYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMH-GKPVTDKDYHGSFVLLYFGFCHCPDICPSELVKVGSIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLRHYAQDFHHSIEYLTGTKDQVAKAAKSYRVYFSKTEEHEEGE-DYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVDR 1147
            GP+TW ++ L  +V   AV +Y  + E  Q +T S+V S GKP LGGP+TLVD   G+ VTD  + G F LLYFGF HCPDICP+ELV++G +  KL  +  A  V P+F++VDP+RD++AQ+  Y +DFH S + LTGT+DQVA   KSYRVYFSK +E++    DYL+DHSIV+YL+ P+G FLDFFTQ   + D V +
Sbjct:   43 GPITWSSLALASVVGAGAVYYYYTEKERLQTQTTSKVVSIGKPLLGGPWTLVDCDTGRAVTDASFRGKFTLLYFGFTHCPDICPNELVRIGDVLDKLSKEENAPEVLPLFITVDPNRDTIAQMLEYKKDFHPSFKMLTGTRDQVADITKSYRVYFSKADENDXXXXDYLVDHSIVMYLVGPDGQFLDFFTQSARVDDIVKK 243
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BLAST of mRNA_L-elsbetiae_contig54.13616.1 vs. uniprot
Match: A0A3R7GYF8_9STRA (Uncharacterized protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GYF8_9STRA)

HSP 1 Score: 218 bits (554), Expect = 3.830e-62
Identity = 106/197 (53.81%), Postives = 141/197 (71.57%), Query Frame = 2 
Query:  551 GPLTWGAVGLLGIVATLAVGFYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGK-PVTDKDYHGSFVLLYFGFCHCPDICPSELVKVGSIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLRHYAQDFHHSIEYLTGTKDQVAKAAKSYRVYFSKTEEHEEGED-YLLDHSIVIYLLAPNGDFLDFFTQRTTIAD 1135
            GP++W  + L G+V    V +Y  + +  Q +T S+VTS GKP LGGP+TLVD   K PVTD  + G + LLYFGF HCPDICP+ELV++G +  KLE +    VV P+FVSVDP RD++AQ++ Y  DFH   + LTGT+DQVA   K+YRVYFSK +E+E+ +D YL+DHSIV+YL+ P+G+FLDFFTQ   + D
Sbjct:   36 GPVSWSGLALAGVVGGSVVYYYYSEKDRLQTQTTSKVTSVGKPLLGGPWTLVDCDTKRPVTDASFRGQYSLLYFGFTHCPDICPNELVRIGDVLDKLESENLPEVV-PLFVSVDPKRDTIAQMQAYKADFHPKFKMLTGTRDQVADITKAYRVYFSKADENEDDDDDYLVDHSIVMYLVGPDGEFLDFFTQNARVED 231
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig54.13616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBL1_9PHAE3.320e-14686.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIM6_ECTSI3.940e-9079.35SCO1 homolog, cytochrome c oxidase copper chaperon... [more]
A0A835ZB06_9STRA5.200e-8161.84SCO1 family protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A4D9DEH7_9STRA1.390e-7258.08Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3UQK5_HETAK5.070e-6666.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UVK0_9STRA3.070e-6552.61Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A662XZY4_9STRA2.970e-6453.23Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A7S3HFZ5_9STRA6.570e-6452.74Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2D4BK40_PYTIN4.540e-6352.74SCO1 family protein n=1 Tax=Pythium insidiosum Tax... [more]
A0A3R7GYF8_9STRA3.830e-6253.81Uncharacterized protein n=5 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig54contigL-elsbetiae_contig54:30395..35281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score295.4
Seed ortholog evalue3.4e-77
Seed eggNOG ortholog2880.D7FIM6
KEGG koko:K07152,ko:K12818
KEGG Pathwayko03040,map03040
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.copper ion homeostasis
EggNOG OGsCOG1999@1,KOG2792@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko03041
Ec32 ortholog descriptionSCO1 homolog, cytochrome c oxidase copper chaperone
Ec32 orthologEc-27_000320.1
Exons5
Model size2239
Cds size1050
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816563.8647952-UTR-L-elsbetiae_contig54:30394..305241622816563.8647952-UTR-L-elsbetiae_contig54:30394..30524Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig54 30395..30524 +
1691683650.1573482-UTR-L-elsbetiae_contig54:30394..305241691683650.1573482-UTR-L-elsbetiae_contig54:30394..30524Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig54 30395..30524 +
1622816563.9476473-UTR-L-elsbetiae_contig54:34222..352811622816563.9476473-UTR-L-elsbetiae_contig54:34222..35281Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig54 34223..35281 +
1691683650.2329063-UTR-L-elsbetiae_contig54:34222..352811691683650.2329063-UTR-L-elsbetiae_contig54:34222..35281Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig54 34223..35281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816563.8780928-CDS-L-elsbetiae_contig54:30524..310521622816563.8780928-CDS-L-elsbetiae_contig54:30524..31052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig54 30525..31052 +
1691683650.1720052-CDS-L-elsbetiae_contig54:30524..310521691683650.1720052-CDS-L-elsbetiae_contig54:30524..31052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig54 30525..31052 +
1622816563.8900356-CDS-L-elsbetiae_contig54:31621..317771622816563.8900356-CDS-L-elsbetiae_contig54:31621..31777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig54 31622..31777 +
1691683650.180581-CDS-L-elsbetiae_contig54:31621..317771691683650.180581-CDS-L-elsbetiae_contig54:31621..31777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig54 31622..31777 +
1622816563.903332-CDS-L-elsbetiae_contig54:32141..322721622816563.903332-CDS-L-elsbetiae_contig54:32141..32272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig54 32142..32272 +
1691683650.1896002-CDS-L-elsbetiae_contig54:32141..322721691683650.1896002-CDS-L-elsbetiae_contig54:32141..32272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig54 32142..32272 +
1622816563.9157372-CDS-L-elsbetiae_contig54:32695..328761622816563.9157372-CDS-L-elsbetiae_contig54:32695..32876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig54 32696..32876 +
1691683650.2002196-CDS-L-elsbetiae_contig54:32695..328761691683650.2002196-CDS-L-elsbetiae_contig54:32695..32876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig54 32696..32876 +
1622816563.9336667-CDS-L-elsbetiae_contig54:34168..342221622816563.9336667-CDS-L-elsbetiae_contig54:34168..34222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig54 34169..34222 +
1691683650.220152-CDS-L-elsbetiae_contig54:34168..342221691683650.220152-CDS-L-elsbetiae_contig54:34168..34222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig54 34169..34222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig54.13616.1prot_L-elsbetiae_contig54.13616.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig54 30525..34222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig54.13616.1

>prot_L-elsbetiae_contig54.13616.1 ID=prot_L-elsbetiae_contig54.13616.1|Name=mRNA_L-elsbetiae_contig54.13616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=350bp
MATRLAFTAISRARPQPLRISSALKAPARCFNPHAYPHRGVAAAHISSSA
CSRKSTSRAASGESNTAPSSTASAATAAAPASTTKGSGSITVGANAAGAG
AQGGSEAAADPSTGSDPSDSNSSTDGGGGGGGGGGDGGSRGPLTWGAVGL
LGIVATLAVGFYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVT
DKDYHGSFVLLYFGFCHCPDICPSELVKVGSIATKLEGKLGAGVVKPVFV
SVDPDRDSLAQLRHYAQDFHHSIEYLTGTKDQVAKAAKSYRVYFSKTEEH
EEGEDYLLDHSIVIYLLAPNGDFLDFFTQRTTIADCVDRTVKQVKDFKT*
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mRNA from alignment at L-elsbetiae_contig54:30395..35281+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig54.13616.1 ID=mRNA_L-elsbetiae_contig54.13616.1|Name=mRNA_L-elsbetiae_contig54.13616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4887bp|location=Sequence derived from alignment at L-elsbetiae_contig54:30395..35281+ (Laminarionema elsbetiae ELsaHSoW15)
ACAAGAGCACATTCCAAAGAAACGCCTCTTTCTATATAGTTACCCATTTG
CCGCTAAATAATGTAACTTCCCCAGCCTCACCTGCCCACATTCATCGCAG
TCCTGTTGTGTGCAACAGTAGGAGAGTGCTATGGCGACCCGACTAGCGTT
TACAGCTATATCCCGAGCACGACCACAACCACTACGGATTTCGAGTGCAT
TGAAAGCACCGGCTCGGTGCTTTAACCCCCACGCATACCCGCACCGAGGG
GTTGCTGCTGCCCACATCTCGTCGTCGGCGTGTTCGAGAAAATCAACATC
CCGCGCCGCAAGCGGCGAGAGCAACACCGCGCCGAGCTCAACAGCATCAG
CAGCAACTGCTGCTGCTCCAGCATCGACAACGAAGGGCTCTGGTAGCATA
ACTGTTGGCGCCAACGCTGCTGGTGCTGGTGCGCAAGGTGGCTCCGAGGC
CGCTGCCGACCCAAGCACCGGCTCAGATCCTTCCGACAGCAATAGCAGCA
CAGACGGCGGAGGTGGAGGTGGAGGTGGAGGTGGGGACGGGGGAAGCCGC
GGCCCGTTAACGTGGGGAGCAGTGGGTCTACTCGGCATTGTGGCAACTCT
GGCGGTTGGGTTCTATAGGATGAAATGGGAGGAGAAGCAGAATCGGACCG
CTTCTGAGGTGGGTTCCTTGGGTGTGTTGATGTGTTATCGGGCAGAGCGC
TCGCATGTCAACCGTGGGTTGACTCATTCTCTGCCTGCGGTAGCTGGCTT
GCCTACAGCAGTGGGTAGTGTGTGCATTTTTTGCCTCGTGTACCCTGGCA
CGATGAACGATCACAATACGTTCTTCATAAACTCAAACTTGCATTTACTG
CTCGTGGTTCCGCTCGTTTCAGTCTTTTTCTTGGCGCTCCACAGCAGAGT
GACTTCGGCAGGCAGGTTATTTTGCAGGACGTTTGTGTTTGTGTTTGTCT
TGTGTAAAGCTACAGCAGTGAGTACGCAAATCGAGTTCCAGCAGACGAAC
ACGTAGTATTACATATGTGTGTAGATTCGTAGATTCATGTTTGGGATGGT
ATGTAAGGATCTACGAAGTAGTCTATTCGAGTGTCACACAAGACAGACCT
GTGCTGTGTGTTTAATCTGCGGCCACCCAAGGCACATGTCAAAGATTCCG
TGCGATCGACATCATCTGTGCGTATTCTTCTACATGTGGTGCATGGTGAT
GTATGCCCGAACAACGCAAAACAACAGGTTACATCCACGGGCAAGCCGGC
CCTAGGCGGACCGTTCACGCTCGTCGACATGCACGGGAAGCCGGTAACAG
ACAAGGACTACCACGGCTCGTTCGTGCTGCTCTACTTCGGCTTCTGCCAC
TGCCCGGACATCTGTCCCTCCGAGTTGGTGAAGGTGAGCAAAAGCGTACA
TATCGTGCTGCTGTATACTTGGTAAGGGTAGTGGAGGGATACAAGCGGTG
GTGTACAAAGTATGTCGGCGACGCTGTAAGGCAAACAGACGCCTGCAGAT
GATGGCAAACAGACGCTACATACACCTGCTGCAGATAATGGATGTATGCT
GCAAGGCCAGAAGGGTTTATATTTTATACTCCTAGGTAGTGTCGACACCA
CGAGTCAAGGCCCATCTAGCTTGGTCGTTTCTCATCTTAGCTCTCAATAA
GTGTCGTTCGACAGCAGCATCGTTCCACCGCCTGCCGGCGTCCATCGAAA
CTGATCGCATGCATACACACTATATACTGCACATCCCTGACTGGAAGGTG
GGCTCCATCGCGACCAAACTAGAGGGGAAGCTTGGCGCCGGGGTGGTGAA
GCCGGTGTTCGTGTCGGTGGACCCCGACAGGGACAGCCTAGCGCAGCTGA
GGCATTACGCACAGGACTTCCACCATAGGTCAGTCAGGCTTTCTCAGCCA
GCTCTCCCGCTACCACGCAAACTATCGCAATTGACACATGTAGCGTTGAA
ACTGTTCACTCGTACCTATTTACCCGCGCATCACGCTCCAACCCCCCCCC
CTCCAGCTTGTGCCCTCCCTTCCAGATTTTTGCAGCTTGTGTGCACGAAG
AGTCACGCATCTCAGGCAACCAGACAGAGTTTCCATTCTCAACGGGACGA
AGCTAACCTCTTTCTTTGTCGACGGGGGGCTACTACATAGAGTACCACTA
CCAGCCTCGAGCGTGCGCCTTATACCCACCGATCGGCCTTTCACGGAACG
GGCCCCCACGCAACGCCCCCCCCCCCACCCCCTGTTTCTCGTCTCCTCGT
CTTATTGCACCCTTTCCGCCGGTGGCGGCACGCTCGCTCACTCGCTCGCA
GCATCGAGTACCTGACGGGCACGAAGGACCAGGTCGCCAAGGCGGCCAAG
TCCTACCGGGTGTACTTCTCCAAGACGGAAGAGCACGAGGAGGGCGAGGA
CTACCTGCTGGACCACTCCATCGTCATCTACCTGCTGGCACCGAACGGCG
ACTTCTTGGACTTCTTCACGCAGAGAACGACGGTGCGGTTGGTTGATATG
TACATACATACCACAAACCAAACAAAGCCGTCGGTAGAGTTTGTTTTGGT
CGTTTGTGGGTGTTTTTTTTTTGCGCAGCTGCTGTAGGGGCCCAATCTCT
TTCGGAATCTGGTTATTTTGTACGTAGATAAATGTAGACTTTTGTGATCA
GGTATAATAGATACCTCCACGATCGTACCCGAAATTTCGATCTGCTCTGT
GTACACGAGGCAAGCAGTAGATATTCATTTTCAGTCGTCGCTTTGGAGTT
TTTTGTGAGTGATGCCATACATATTTATTTCCATCGTCTGCCCCACTGGC
CCCCGTCCTCCACTACGACTAGCTAGATGGCCCAACCAGGGTCACAAAGA
GGGGGGGGCGGACCCCCTCCTGCGGTGCCTGCCTGTTATGTTTTTATCGC
GAGCAGGGTTTAGCACTCCCCACCTTCATCAACAGTGAAGTCGAAGTATT
ATGTGATGCAATGGCTGATGACCCTCGAACGTCTCTTCTTTTCAGCGAAG
CTCGAAAACCAGGCTCTGGAATAGGTTTCGTACATAGTCGCAATATCCTT
TGAGATTGTCCCGGGGGGCGAACAATGTATGTACAGCCGCCAAAATATCG
CCCCGAAGCATTCTCAAAGGTAGAAAATAGCCACGACGATGCTACGGAGA
AAATCCGGTGGGTGCACACGAGCGCCCCGCGGGGCGTCCAAAGCCAGCTG
AAAAAGTATCACCTCGGGGTGTTGTGAAATCTAGAAGGGCAAAAAACAAA
ACAAAAGAGCCAAAAATGCGGCCCCGGGGCGAGCTGAAAGTTTATGTGTA
AAAAAACACATTTTGGGGGGGGGGACGTACTCTCTGACCGGGGCGTTCTT
AAGGGGTATTACGACAGTATTTTCCTCTCTTGAACCCTTTCTAGCGAGAC
TGAAATTCGGCATTCGGGTGCACGCACGACCGGCGAAGTAACGGTCACGC
CATTTTCTGCATCTTTATCGTCGGGTTTGTTCGTGTTGTCGCTATTATGC
TGAGCGCTCCTAGAGGCCATTGTTACTTTCTATGTATGGTAGTGGGGAAT
CATGAGGTTCATCGTCGACCAACATGCGTCAAGAATCGTGTTCATTCTCG
GTGTATGCTTGACTTCACGGCCGTTCGGTGGTTCTCGGTCCTGACCCTCG
TGCGCAATCTAAGAACGATGCCCTCGGGACTGCCTGTTTTTGCGCGTCAC
ACGCTCTTTGCGCGGCTCGCCCTCACCTGCTGATGTTGCTGCTTTCGTGT
TGGCTCCGTTTTGCTTCCAATCAGATCGCCGACTGCGTCGACAGAACCGT
CAAGCAGGTCAAGGACTTCAAGACGTAAAAGAGAGACCCAGAGAAGCTCG
TGGAGAGAGAGGGAGAGCGAGAGAAAGAGAGAGGAGAGGAGAGGGTGCGC
GTGTGTTCCCAGGATCATACATGCCCGCTCAGTATTTGTTAGAACGTACC
ATGGTTGAGAGATCTCGCGTCCCCACCACATCGTGATGGAGCACGCCGGA
TCTTCGGAGGACCAGGGAAGAGGGGGGGGGTGTGGAGGCCGTGCCAACTG
CGTGCATGAAACCGGGAAACCGGGAAATACCTCCTGGGCCACTAGCACTG
AGACCGAGGGGTTGTCTCGACTGCGCCAAGAGTGGTCCGGAGGTGCTGGG
GGGATCCGCACGTTGGCGTGCACAAAGGGCTCCGATTTCCGCCTTGCTTC
TCTCTAGTTTTCAAGAACCTTGGCAAGAAAAGTCAAGTGGCCGACTTGGC
TCCAATTGAATCCTAAACGAAACTGTGGCTGTTGAATAAGTTATCTCGTG
TAGAATCTGGGTCAGCAGATAAGCGTCGAGCCCAGAACTCTGTTAGAACT
CTGCGGCCAAGCTTGCATCGGTTTAGGAAGCGTGAGAAATGCATGCGCCC
CCCCCCCATGTTGTCTTGGGTGTGCCAAAGCTGCTGTCGCATGCTGCGGT
GCAACGAAAGCAACCGGCCGCACGTGGCTCGAACTTTTGGGCTCGAGTAC
ACATGGTGTCCGCTGATTAGGTGCTTTATGTACTGCAAGTGCGTGGCTTT
CTTATTGAAGGGAGCGGCAGATTTACAAGTCCCTCCCGTCTTTTGTCTGC
ATTTTCCCCAGTTCCACGTGTTTCTTTTTCCACGCCCCTCGTTGCTCCGC
ATTTGCATTTCCAGCCGAGGGCTGATCAGAGGACGCGTTTTCCCTCCAAA
ACAGCATCGCCTTCTGGCTTTCGCTCTGTGTGATTTGTCGCTTAGTTGAA
CTGAAATCGATTTTTGCGCCAGGATGAAGACATGCCACACTCCCGAGGCT
GAAGCTGGGAATACAAGCCGTGATGCCCACCGTGATGACCACTCCGTTCG
AACCGGGAACACTTCACCACTCACCACACTACAAGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig54:30395..35281+

>mRNA_L-elsbetiae_contig54.13616.1 ID=mRNA_L-elsbetiae_contig54.13616.1|Name=mRNA_L-elsbetiae_contig54.13616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2100bp|location=Sequence derived from alignment at L-elsbetiae_contig54:30395..35281+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGACCCGACTAGCGTTTACAGCTATATCCCGAGCACGACCACAACC
ACTACGGATTTCGAGTGCATTGAAAGCACCGGCTCGGTGCTTTAACCCCC
ACGCATACCCGCACCGAGGGGTTGCTGCTGCCCACATCTCGTCGTCGGCG
TGTTCGAGAAAATCAACATCCCGCGCCGCAAGCGGCGAGAGCAACACCGC
GCCGAGCTCAACAGCATCAGCAGCAACTGCTGCTGCTCCAGCATCGACAA
CGAAGGGCTCTGGTAGCATAACTGTTGGCGCCAACGCTGCTGGTGCTGGT
GCGCAAGGTGGCTCCGAGGCCGCTGCCGACCCAAGCACCGGCTCAGATCC
TTCCGACAGCAATAGCAGCACAGACGGCGGAGGTGGAGGTGGAGGTGGAG
GTGGGGACGGGGGAAGCCGCGGCCCGTTAACGTGGGGAGCAGTGGGTCTA
CTCGGCATTGTGGCAACTCTGGCGGTTGGGTTCTATAGGATGAAATGGGA
GGAGAAGCAGAATCGGACCGCTTCTGAGATGGCGACCCGACTAGCGTTTA
CAGCTATATCCCGAGCACGACCACAACCACTACGGATTTCGAGTGCATTG
AAAGCACCGGCTCGGTGCTTTAACCCCCACGCATACCCGCACCGAGGGGT
TGCTGCTGCCCACATCTCGTCGTCGGCGTGTTCGAGAAAATCAACATCCC
GCGCCGCAAGCGGCGAGAGCAACACCGCGCCGAGCTCAACAGCATCAGCA
GCAACTGCTGCTGCTCCAGCATCGACAACGAAGGGCTCTGGTAGCATAAC
TGTTGGCGCCAACGCTGCTGGTGCTGGTGCGCAAGGTGGCTCCGAGGCCG
CTGCCGACCCAAGCACCGGCTCAGATCCTTCCGACAGCAATAGCAGCACA
GACGGCGGAGGTGGAGGTGGAGGTGGAGGTGGGGACGGGGGAAGCCGCGG
CCCGTTAACGTGGGGAGCAGTGGGTCTACTCGGCATTGTGGCAACTCTGG
CGGTTGGGTTCTATAGGATGAAATGGGAGGAGAAGCAGAATCGGACCGCT
TCTGAGGTTACATCCACGGGCAAGCCGGCCCTAGGCGGACCGTTCACGCT
CGTCGACATGCACGGGAAGCCGGTAACAGACAAGGACTACCACGGCTCGT
TCGTGCTGCTCTACTTCGGCTTCTGCCACTGCCCGGACATCTGTCCCTCC
GAGTTGGTGAAGGTTACATCCACGGGCAAGCCGGCCCTAGGCGGACCGTT
CACGCTCGTCGACATGCACGGGAAGCCGGTAACAGACAAGGACTACCACG
GCTCGTTCGTGCTGCTCTACTTCGGCTTCTGCCACTGCCCGGACATCTGT
CCCTCCGAGTTGGTGAAGGTGGGCTCCATCGCGACCAAACTAGAGGGGAA
GCTTGGCGCCGGGGTGGTGAAGCCGGTGTTCGTGTCGGTGGACCCCGACA
GGGACAGCCTAGCGCAGCTGAGGCATTACGCACAGGACTTCCACCATAGG
TGGGCTCCATCGCGACCAAACTAGAGGGGAAGCTTGGCGCCGGGGTGGTG
AAGCCGGTGTTCGTGTCGGTGGACCCCGACAGGGACAGCCTAGCGCAGCT
GAGGCATTACGCACAGGACTTCCACCATAGCATCGAGTACCTGACGGGCA
CGAAGGACCAGGTCGCCAAGGCGGCCAAGTCCTACCGGGTGTACTTCTCC
AAGACGGAAGAGCACGAGGAGGGCGAGGACTACCTGCTGGACCACTCCAT
CGTCATCTACCTGCTGGCACCGAACGGCGACTTCTTGGACTTCTTCACGC
AGAGAACGACGCATCGAGTACCTGACGGGCACGAAGGACCAGGTCGCCAA
GGCGGCCAAGTCCTACCGGGTGTACTTCTCCAAGACGGAAGAGCACGAGG
AGGGCGAGGACTACCTGCTGGACCACTCCATCGTCATCTACCTGCTGGCA
CCGAACGGCGACTTCTTGGACTTCTTCACGCAGAGAACGACGATCGCCGA
CTGCGTCGACAGAACCGTCAAGCAGGTCAAGGACTTCAAGACGTAAATCG
CCGACTGCGTCGACAGAACCGTCAAGCAGGTCAAGGACTTCAAGACGTAA
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