mRNA_L-elsbetiae_contig5383.13593.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5383.13593.1
Unique NamemRNA_L-elsbetiae_contig5383.13593.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5383.13593.1 vs. uniprot
Match: D7FUY8_ECTSI (Similar to Cullin-1 (CUL-1) isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUY8_ECTSI)

HSP 1 Score: 320 bits (821), Expect = 1.750e-100
Identity = 162/168 (96.43%), Postives = 162/168 (96.43%), Query Frame = 1 
Query:    1 LPTGGGKPNV-TSDDVVAAMLEVYEHYKGLMADSFDSSPGFRAVLDEACKSFVNAVPQASEWLARYAHCLLDKGFKESKVDEDTRQESLDHVGFLFAYIADKDIFHKYYSKLLSKRIIQLTSVSDEAEERMLKNMRKISGFEYTSKLQRMFVDKALSRDLHTGYVEWQ 501
            LP GGGK  V TSDDVVAAMLEVYEHYKGLMADSFDSSPGFRAVLDEACKSFVNAVPQASEWLARYAHCLLDKGFKESKVDE TRQESLDHVGFLFAYIADKDIFHKYYSKLLSKRIIQLTSVSDEAEERMLKNMRKISGFEYTSKLQRMFVDK LSRDLHTGYVEWQ
Sbjct:  370 LPAGGGKAAVVTSDDVVAAMLEVYEHYKGLMADSFDSSPGFRAVLDEACKSFVNAVPQASEWLARYAHCLLDKGFKESKVDEGTRQESLDHVGFLFAYIADKDIFHKYYSKLLSKRIIQLTSVSDEAEERMLKNMRKISGFEYTSKLQRMFVDKTLSRDLHTGYVEWQ 537
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BLAST of mRNA_L-elsbetiae_contig5383.13593.1 vs. uniprot
Match: A0A6H5JUU8_9PHAE (CULLIN_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU8_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 1.080e-93
Identity = 151/191 (79.06%), Postives = 163/191 (85.34%), Query Frame = 1 
Query:   88 MADSFDSSPGFRAVLDEACKSFVNAVPQASEWLARYAHCLLDKGFKESKVDEDTRQESLDHVGFLFAYIADKDIFHKYYSKLLSKRIIQLTSV-------------SDEAEERMLKNMRKISGFEYTSKLQRMFVDKALSRDLHTGYVEWQETRIRQRQAKLISEGIDPSIFTFTDDEEHASRMMEDMKVS 621
            MADSFDSSPGF AVLDEACKSFVNAVPQASEWLARYAHCLLDKGFKESKVDE TRQESLDHVGFLFAYIADKDIFHKYYSKLLSKRIIQLTSV             + +   R  ++  +ISGFEYTSKLQRMFVDK LSRDLHTGYVEWQE RIR+R A++I EG+DP++FTFTD+EEHASRMM DMKVS
Sbjct:    1 MADSFDSSPGFSAVLDEACKSFVNAVPQASEWLARYAHCLLDKGFKESKVDEGTRQESLDHVGFLFAYIADKDIFHKYYSKLLSKRIIQLTSVMALGGNLDPTTYRAGDINLRRWRSSNQISGFEYTSKLQRMFVDKTLSRDLHTGYVEWQEKRIRERHARMIEEGMDPTVFTFTDEEEHASRMMNDMKVS 191
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BLAST of mRNA_L-elsbetiae_contig5383.13593.1 vs. uniprot
Match: A0A835YSZ1_9STRA (Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSZ1_9STRA)

HSP 1 Score: 258 bits (659), Expect = 1.240e-76
Identity = 123/164 (75.00%), Postives = 147/164 (89.63%), Query Frame = 1 
Query:   16 GKPNV-TSDDVVAAMLEVYEHYKGLMADSFDSSPGFRAVLDEACKSFVNAVPQASEWLARYAHCLLDKGFKESKVDEDTRQESLDHVGFLFAYIADKDIFHKYYSKLLSKRIIQLTSVSDEAEERMLKNMRKISGFEYTSKLQRMFVDKALSRDLHTGYVEWQE 504
            GKP   TSD+VVAAML VY+HY+GL+ +SF ++  FR VLDEACK+FVNA+P A EWLAR+AHCLLD+ F+ES+++ED R+E+LD VGFLFAYIADKD+FHKYY+KLLSKRIIQLTSVS++AEERML NMR+ISGFE+TSKLQRMFVDK LSRDLHTGY+EW E
Sbjct:  394 GKPTAATSDEVVAAMLRVYQHYRGLVGESFMNAAAFRGVLDEACKAFVNAMPSAPEWLARHAHCLLDRSFRESRIEEDARREALDRVGFLFAYIADKDVFHKYYAKLLSKRIIQLTSVSNDAEERMLDNMRRISGFEFTSKLQRMFVDKTLSRDLHTGYMEWLE 557
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BLAST of mRNA_L-elsbetiae_contig5383.13593.1 vs. uniprot
Match: W7TEJ5_9STRA (Cre-cul-1 protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEJ5_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.240e-33
Identity = 70/172 (40.70%), Postives = 104/172 (60.47%), Query Frame = 1 
Query:   22 PNVTSDDVVAAMLEVYEHYKGLMADSFDSSPGFRAVLDEACKSFVNAVPQASEWLARYAHCLLDKGFKESKVDEDTRQESLDHVGFLFAYIADKDIFHKYYSKLLSKRIIQLTSVSDEAEERMLKNMRKISGFEYTSKLQRMFVDKALSRDLHTGYVEWQETRIRQRQAKLI 537
            P+    D +  ML++Y HY  L+  +F     F      AC+ F+NA+P  SE LA +AH  LDK   ES+++      +LD +  LF +I DKD+FH+ Y++LL+ RII  +SVSDEAE RM+K++ ++ GF+Y    QRMF+DK LS +L   + EW+     Q+Q  L+
Sbjct:  198 PDYVCSDTIQTMLDLYSHYLTLVRVTFKDDSRFAKAFKTACEHFINALPNMSESLAIHAHYFLDKNCPESRMENV--DVALDSIVLLFNFIQDKDLFHRSYARLLAARIISFSSVSDEAERRMMKHLMQVCGFQYAMTFQRMFMDKTLSFELSCEFAEWEREHRAQQQRLLL 367
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BLAST of mRNA_L-elsbetiae_contig5383.13593.1 vs. uniprot
Match: A0A4D9CZD0_9STRA (CULLIN_2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZD0_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.830e-33
Identity = 69/172 (40.12%), Postives = 104/172 (60.47%), Query Frame = 1 
Query:   22 PNVTSDDVVAAMLEVYEHYKGLMADSFDSSPGFRAVLDEACKSFVNAVPQASEWLARYAHCLLDKGFKESKVDEDTRQESLDHVGFLFAYIADKDIFHKYYSKLLSKRIIQLTSVSDEAEERMLKNMRKISGFEYTSKLQRMFVDKALSRDLHTGYVEWQETRIRQRQAKLI 537
            P+    D +  ML++Y HY  L+  +F     F      AC+ F+NA+P  SE LA ++H  LDK   ES+++      +LD +  LF +I DKD+FH+ Y++LL+ RII  +SVSDEAE RM+K++ ++ GF+Y    QRMF+DK LS +L   + EW+     Q+Q  L+
Sbjct:  419 PDYVCSDTIQTMLDIYSHYLTLVRVTFKDDSRFAKAFKTACEHFINALPNMSESLAIHSHYFLDKNCPESRMENV--DVALDSIVLLFNFIQDKDLFHRSYARLLAARIISFSSVSDEAERRMMKHLMQVCGFQYAMTFQRMFMDKTLSFELSREFAEWEREHRAQQQRLLL 588
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BLAST of mRNA_L-elsbetiae_contig5383.13593.1 vs. uniprot
Match: V5I1H9_BYSSN (Cullin n=3 Tax=Eurotiales TaxID=5042 RepID=V5I1H9_BYSSN)

HSP 1 Score: 132 bits (333), Expect = 2.120e-31
Identity = 74/177 (41.81%), Postives = 109/177 (61.58%), Query Frame = 1 
Query:   46 VAAMLEVYEHYKGLMADSFDSSPGFRAVLDEACKSFVN-------AVPQASEWLARYAHCLLDKGFKESKVDEDTRQESLDHVGFLFAYIADKDIFHKYYSKLLSKRIIQLTSVSDEAEERMLKNMRKISGFEYTSKLQRMFVDKALSRDLHTGYVEWQETRIRQRQAKLISEGIDP 555
            V A+L+V+  Y  L+A +F     F   LD AC+ FVN       +  ++ E LARY   LL KG K   V+E   +E L  +  +F YI DKD+F K+YSK+L+KR++ ++SVSD+AE  M+  +++  GFEYT+KLQRMF D  +S+DL+T Y +WQ+  + +   K   + IDP
Sbjct:  355 VDALLQVHTRYSNLVAAAFAGESEFVRSLDNACREFVNRNKICKSSSTKSPELLARYTDSLLKKGSKA--VEESELEEMLVQIMTVFKYIEDKDVFQKFYSKMLAKRLVHVSSVSDDAETSMISKLKEACGFEYTNKLQRMFQDIQISKDLNTSYRDWQDKVLDEEDRK---KSIDP 526
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BLAST of mRNA_L-elsbetiae_contig5383.13593.1 vs. uniprot
Match: A0A022W404_TRIRU (CULLIN_2 domain-containing protein n=3 Tax=Trichophyton TaxID=5550 RepID=A0A022W404_TRIRU)

HSP 1 Score: 132 bits (332), Expect = 2.790e-31
Identity = 73/187 (39.04%), Postives = 112/187 (59.89%), Query Frame = 1 
Query:   16 GKPNVTSDDVVAAMLEVYEHYKGLMADSFDSSPGFRAVLDEACKSFVN-------AVPQASEWLARYAHCLLDKGFKESKVDEDTRQESLDHVGFLFAYIADKDIFHKYYSKLLSKRIIQLTSVSDEAEERMLKNMRKISGFEYTSKLQRMFVDKALSRDLHTGYVEWQETRIRQRQAKLISEGIDP 555
            G  +V     V ++L+V+  Y+ ++ ++F     F   LD AC+ FVN       +  ++ E LARY   LL KG K S  +E   +E L  +  +F YI DKD+F K+YS++L+KR++ ++SVSD+AE  M+  +++  GFEYT+KLQRMF D  +S+DL+T Y EWQE    +   K +   +DP
Sbjct:  330 GSESVDPKVYVDSLLQVHGKYRSMVDEAFAGETEFVRSLDNACREFVNRNALCTTSSTKSPELLARYTDSLLKKGSKSS--EESELEELLVQIMTVFKYIEDKDVFQKFYSRMLAKRLVHVSSVSDDAETSMISKLKEACGFEYTNKLQRMFQDIQISKDLNTNYREWQERTFDEEDRKKM---VDP 511
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BLAST of mRNA_L-elsbetiae_contig5383.13593.1 vs. uniprot
Match: D4AZ42_ARTBC (CULLIN_2 domain-containing protein n=17 Tax=Arthrodermataceae TaxID=34384 RepID=D4AZ42_ARTBC)

HSP 1 Score: 132 bits (331), Expect = 3.720e-31
Identity = 73/187 (39.04%), Postives = 111/187 (59.36%), Query Frame = 1 
Query:   16 GKPNVTSDDVVAAMLEVYEHYKGLMADSFDSSPGFRAVLDEACKSFVN-------AVPQASEWLARYAHCLLDKGFKESKVDEDTRQESLDHVGFLFAYIADKDIFHKYYSKLLSKRIIQLTSVSDEAEERMLKNMRKISGFEYTSKLQRMFVDKALSRDLHTGYVEWQETRIRQRQAKLISEGIDP 555
            G   V     V ++L+V+  Y+ ++ ++F     F   LD AC+ FVN       +  ++ E LARY   LL KG K S  +E   +E L  +  +F YI DKD+F K+YS++L+KR++ ++SVSD+AE  M+  +++  GFEYT+KLQRMF D  +S+DL+T Y EWQE    +   K +   +DP
Sbjct:  312 GSEGVDPKVYVDSLLQVHGKYRSMVDEAFAGETEFVRSLDNACREFVNRNALCTTSSTKSPELLARYTDSLLKKGSKSS--EESELEELLVQIMTVFKYIEDKDVFQKFYSRMLAKRLVHVSSVSDDAETSMISKLKEACGFEYTNKLQRMFQDIQISKDLNTNYREWQERTFDEEDRKKM---VDP 493
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BLAST of mRNA_L-elsbetiae_contig5383.13593.1 vs. uniprot
Match: A0A1L9SS48_9EURO (CULLIN_2 domain-containing protein n=1 Tax=Penicilliopsis zonata CBS 506.65 TaxID=1073090 RepID=A0A1L9SS48_9EURO)

HSP 1 Score: 132 bits (331), Expect = 3.940e-31
Identity = 70/171 (40.94%), Postives = 105/171 (61.40%), Query Frame = 1 
Query:   46 VAAMLEVYEHYKGLMADSFDSSPGFRAVLDEACKSFVN-------AVPQASEWLARYAHCLLDKGFKESKVDEDTRQESLDHVGFLFAYIADKDIFHKYYSKLLSKRIIQLTSVSDEAEERMLKNMRKISGFEYTSKLQRMFVDKALSRDLHTGYVEWQETRIRQRQAKLI 537
            V A+L+V+  Y+ L+ D+F+    F   LD AC+ FVN       +  ++ E LARY   LL KG K +  +E   +E L  +  +F YI DKD+F K+YSK+L+KR++ + SVSD+AE  M+  +++  GFEYT+KLQRMF D  +S+DL+  Y +WQE  +     K +
Sbjct:  357 VDALLQVHTRYQSLVNDAFNGESEFVRSLDNACREFVNRNTICKSSSTKSPELLARYTDSLLKKGAKAA--EESELEEMLVQIMTVFKYIEDKDVFQKFYSKMLAKRLVHVNSVSDDAETSMISKLKEACGFEYTNKLQRMFQDIQISKDLNANYRDWQEKVLDDEDRKKL 525
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BLAST of mRNA_L-elsbetiae_contig5383.13593.1 vs. uniprot
Match: A0A232M0K7_9EURO (CULLIN_2 domain-containing protein n=1 Tax=Elaphomyces granulatus TaxID=519963 RepID=A0A232M0K7_9EURO)

HSP 1 Score: 131 bits (330), Expect = 6.250e-31
Identity = 72/177 (40.68%), Postives = 109/177 (61.58%), Query Frame = 1 
Query:   46 VAAMLEVYEHYKGLMADSFDSSPGFRAVLDEACKSFVN-------AVPQASEWLARYAHCLLDKGFKESKVDEDTRQESLDHVGFLFAYIADKDIFHKYYSKLLSKRIIQLTSVSDEAEERMLKNMRKISGFEYTSKLQRMFVDKALSRDLHTGYVEWQETRIRQRQAKLISEGIDP 555
            V A+L+V++ Y+ L+  +FD    F   LD AC+ FVN       +  ++ E LARY   LL KG K +  +E   +E L  +   F YI DKD+F K+YSK+L+KR++ ++SVSD+AE  M+  +++  GFEYT+KLQRMF D  +S+DL+  Y +WQ+  + +   K +   IDP
Sbjct:  715 VDALLQVHKRYQNLVDTAFDGESEFVRSLDNACREFVNRNQICKSSSTKSPELLARYTDSLLKKGSKAT--EESELEEMLGQIMTAFKYIEDKDVFQKFYSKMLAKRLVHVSSVSDDAETSMISKLKEACGFEYTNKLQRMFQDIQISKDLNASYRDWQDRVLDEDDRKKM---IDP 886
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5383.13593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUY8_ECTSI1.750e-10096.43Similar to Cullin-1 (CUL-1) isoform 1 n=1 Tax=Ecto... [more]
A0A6H5JUU8_9PHAE1.080e-9379.06CULLIN_2 domain-containing protein n=1 Tax=Ectocar... [more]
A0A835YSZ1_9STRA1.240e-7675.00Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
W7TEJ5_9STRA1.240e-3340.70Cre-cul-1 protein (Fragment) n=1 Tax=Nannochlorops... [more]
A0A4D9CZD0_9STRA1.830e-3340.12CULLIN_2 domain-containing protein n=1 Tax=Nannoch... [more]
V5I1H9_BYSSN2.120e-3141.81Cullin n=3 Tax=Eurotiales TaxID=5042 RepID=V5I1H9_... [more]
A0A022W404_TRIRU2.790e-3139.04CULLIN_2 domain-containing protein n=3 Tax=Trichop... [more]
D4AZ42_ARTBC3.720e-3139.04CULLIN_2 domain-containing protein n=17 Tax=Arthro... [more]
A0A1L9SS48_9EURO3.940e-3140.94CULLIN_2 domain-containing protein n=1 Tax=Penicil... [more]
A0A232M0K7_9EURO6.250e-3140.68CULLIN_2 domain-containing protein n=1 Tax=Elaphom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5383contigL-elsbetiae_contig5383:8404..12148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score321.6
Seed ortholog evalue3.4e-85
Seed eggNOG ortholog2880.D7FUY8
Preferred nameCUL1
KEGG koko:K03347
KEGG Pathwayko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04340,ko04341,ko04350,ko04710,ko05168,ko05200,map04110,map04111,map04114,map04120,map04141,map04310,map04340,map04341,map04350,map04710,map05168,map05200
KEGG ModuleM00379,M00380,M00381,M00382,M00387,M00407,M00411
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000082,GO:0000086,GO:0000151,GO:0000152,GO:0000165,GO:0000209,GO:0000278,GO:0002119,GO:0002164,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006275,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006513,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006915,GO:0006935,GO:0006950,GO:0006952,GO:0007049,GO:0007050,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007275,GO:0007346,GO:0007399,GO:0007568,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0008283,GO:0008285,GO:0008340,GO:0008361,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010259,GO:0010265,GO:0010389,GO:0010498,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010639,GO:0010646,GO:0010648,GO:0010720,GO:0010824,GO:0010826,GO:0010941,GO:0010942,GO:0010948,GO:0010972,GO:0012501,GO:0014041,GO:0014042,GO:0014066,GO:0014067,GO:0016043,GO:0016055,GO:0016310,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019221,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019899,GO:0019941,GO:0022008,GO:0022402,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0030003,GO:0030111,GO:0030154,GO:0030162,GO:0030163,GO:0030174,GO:0030178,GO:0030587,GO:0030674,GO:0031098,GO:0031146,GO:0031156,GO:0031285,GO:0031286,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031461,GO:0031625,GO:0031647,GO:0031667,GO:0031974,GO:0031981,GO:0032006,GO:0032007,GO:0032101,GO:0032102,GO:0032104,GO:0032105,GO:0032107,GO:0032108,GO:0032268,GO:0032270,GO:0032297,GO:0032434,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032535,GO:0032886,GO:0032991,GO:0033043,GO:0033262,GO:0033554,GO:0034097,GO:0035556,GO:0036211,GO:0038061,GO:0040011,GO:0042127,GO:0042176,GO:0042221,GO:0042330,GO:0042592,GO:0042594,GO:0042981,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043161,GO:0043170,GO:0043207,GO:0043224,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043516,GO:0043518,GO:0043565,GO:0043632,GO:0043687,GO:0043900,GO:0043901,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044839,GO:0044843,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045666,GO:0045732,GO:0045786,GO:0045862,GO:0045930,GO:0045934,GO:0046605,GO:0046606,GO:0046626,GO:0046627,GO:0046916,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051052,GO:0051053,GO:0051093,GO:0051094,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051403,GO:0051493,GO:0051494,GO:0051603,GO:0051607,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051960,GO:0051962,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0060090,GO:0060255,GO:0060284,GO:0060548,GO:0060828,GO:0061136,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070498,GO:0070507,GO:0070555,GO:0070647,GO:0070887,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0071840,GO:0075260,GO:0075262,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0090090,GO:0090329,GO:0090702,GO:0097159,GO:0097190,GO:0097193,GO:0098542,GO:0098771,GO:0099120,GO:0140096,GO:0198738,GO:1900076,GO:1900077,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901796,GO:1901797,GO:1901800,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902531,GO:1902532,GO:1902576,GO:1902749,GO:1902750,GO:1903047,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903429,GO:1903431,GO:1903463,GO:1903464,GO:1903466,GO:1903467,GO:1904799,GO:1904801,GO:1905114,GO:1990234,GO:1990452,GO:1990837,GO:2000026,GO:2000058,GO:2000060,GO:2000104,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001020,GO:2001021
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsCOG5647@1,KOG2166@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121
Exons6
Model size813
Cds size810
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5383.13593.1prot_L-elsbetiae_contig5383.13593.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5383 8404..12146 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816561.5552652-CDS-L-elsbetiae_contig5383:8403..84661622816561.5552652-CDS-L-elsbetiae_contig5383:8403..8466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5383 8404..8466 +
1691683648.6035442-CDS-L-elsbetiae_contig5383:8403..84661691683648.6035442-CDS-L-elsbetiae_contig5383:8403..8466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5383 8404..8466 +
1622816561.5686216-CDS-L-elsbetiae_contig5383:9290..94431622816561.5686216-CDS-L-elsbetiae_contig5383:9290..9443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5383 9291..9443 +
1691683648.6175988-CDS-L-elsbetiae_contig5383:9290..94431691683648.6175988-CDS-L-elsbetiae_contig5383:9290..9443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5383 9291..9443 +
1622816561.5803986-CDS-L-elsbetiae_contig5383:10068..102601622816561.5803986-CDS-L-elsbetiae_contig5383:10068..10260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5383 10069..10260 +
1691683648.6279137-CDS-L-elsbetiae_contig5383:10068..102601691683648.6279137-CDS-L-elsbetiae_contig5383:10068..10260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5383 10069..10260 +
1622816561.5927281-CDS-L-elsbetiae_contig5383:10957..110501622816561.5927281-CDS-L-elsbetiae_contig5383:10957..11050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5383 10958..11050 +
1691683648.638395-CDS-L-elsbetiae_contig5383:10957..110501691683648.638395-CDS-L-elsbetiae_contig5383:10957..11050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5383 10958..11050 +
1622816561.6039946-CDS-L-elsbetiae_contig5383:11272..113451622816561.6039946-CDS-L-elsbetiae_contig5383:11272..11345Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5383 11273..11345 +
1691683648.6490257-CDS-L-elsbetiae_contig5383:11272..113451691683648.6490257-CDS-L-elsbetiae_contig5383:11272..11345Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5383 11273..11345 +
1622816561.614954-CDS-L-elsbetiae_contig5383:11910..121461622816561.614954-CDS-L-elsbetiae_contig5383:11910..12146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5383 11911..12146 +
1691683648.659457-CDS-L-elsbetiae_contig5383:11910..121461691683648.659457-CDS-L-elsbetiae_contig5383:11910..12146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5383 11911..12146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5383.13593.1

>prot_L-elsbetiae_contig5383.13593.1 ID=prot_L-elsbetiae_contig5383.13593.1|Name=mRNA_L-elsbetiae_contig5383.13593.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=270bp
LPTGGGKPNVTSDDVVAAMLEVYEHYKGLMADSFDSSPGFRAVLDEACKS
FVNAVPQASEWLARYAHCLLDKGFKESKVDEDTRQESLDHVGFLFAYIAD
KDIFHKYYSKLLSKRIIQLTSVSDEAEERMLKNMRKISGFEYTSKLQRMF
VDKALSRDLHTGYVEWQETRIRQRQAKLISEGIDPSIFTFTDDEEHASRM
MEDMKVSGGGGGGAASMFGSSGGGGPGMASTAAATAAGAAAGAAAASGGG
LGALSSSGGGGPSTSRRAPP
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mRNA from alignment at L-elsbetiae_contig5383:8404..12148+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5383.13593.1 ID=mRNA_L-elsbetiae_contig5383.13593.1|Name=mRNA_L-elsbetiae_contig5383.13593.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3745bp|location=Sequence derived from alignment at L-elsbetiae_contig5383:8404..12148+ (Laminarionema elsbetiae ELsaHSoW15)
CTACCCACGGGAGGGGGCAAGCCGAACGTCACCAGTGACGACGTGGTGGC
GGCCATGCTCGAGGTATGGTAGTGTGTAGATGTGTGCAATGTGCACGTGT
AGGGGGGGTGGCGGCACGTGCTAAAAACCCTACCTACCAAGGTTTTTATA
AAAATAAACAATGGATCAAAGATGACACCTAACCCACATTAGAGCAAGGA
CTCAATATGGAGTTCAAACGGTATCCATACAGTGACATAATATTTGGCGA
AGCGAGCAGAAAACCAAACCTAAAATATCAGAAGAGTCAACATCTCCCCT
GCAAAGATTTGCGAGGTCGGCCAGCAAGTATTCCGGCGGGTAGATGCCCG
CTATGATGCCGTAATGCTGCCATCTACTTTAAAATAGGAACACATTGCAT
TGTTGAACTAAATCAAAATGCTGGTTTAAGATATGTGGGTTACTGCTTTG
AGGAGAACATACACTATTAGTGGTAGGTGATAAGGCAATAGCCAGGATTT
TTACAGCAGTTACATACAAAACTAAGCCTTTCTTATTTTTACTTCGAACA
CAAACTCGAGAAAGCATCATGCGCGTGAAAACGCTACCGGTTTCAACTAG
CATACCAACATCAACCAGTGTCTACCATGCGAAGTATACATGTCTTACCA
TCTACAGGCCTCCCTTTCAGACGTGGCTCAGTCCATGACAAAATCCTCAG
GGGGTGGATGAAGCAAGAGAACAGAAAAGCACCGATACCTATGAATGCTG
TGCTATGCGGCATGGAAAATGATGTGTGTGTGTTGCATATGCGCGGGGTG
ACAGAACAGAGCTGCTTTCACGATTTGCCTACTCCTTAAAAACTAGATAC
GTGCTGCTTTATGTATCGTGTTCGTTGTTATCTACAGGTGTACGAGCACT
ATAAGGGGCTCATGGCGGACTCGTTCGACAGTTCCCCCGGCTTCAGAGCC
GTTCTGGACGAGGCGTGCAAGTCCTTCGTTAACGCCGTGCCGCAGGCGTC
GGAGTGGCTCGCCCGCTACGCCCACTGCCTTCTGGACAAGGTCGGTGGAG
GGAAATTGCGGTGGTGTTGTTTGCTAGTTTTTCAGGTTTTGAGTTTTGTC
GTGTTTTTGCTGTGCCAGTTGTGGTGATGGCGGCGGGGTGTTTAGTGTTT
TGTGGTGGGGGTGACGATGGTCGCGTCATCATCATTTTGCGCACCACCAT
GGTGCCACTCGGTCGTGCAGTGATTGGCTGTGAGTCGTGTGTCGTGCGTC
CGCTACGGCAGCCGCTACGGCAGCGAGAGTCCACTGCAGCAGCGAGAACA
CGTCTCTTAACTTGAAGAATAAGGTCGAGGTTCGCAGGCCCAAATCGAAG
AGAACGGGCAGTGGCTCGAGAATCGAGCGACCGACGGCAAATCTGTGATT
CGTCCCCGCCTTCAACACAGCAGATGTGTGGTTGTCTTGGTAGTCTATCG
ATGATGACGGCGCCACCGATCAAATGCTATTGACCTCCAGCAGTACAGCC
GATTTTGACTACTACCAGAGCAAAATCAAGCTGCTACAGGCACAAACAAA
CACACCCACCAAAGCATCCGATGCAGACAGCACCAGCGAAGCGAAAAGCG
CCTCGTATTCTAAACCAAAAGGCAAACACCGTCATCGTCCAACACAAACC
AAAACATATGGCCAGGGGTTCAAGGAGTCCAAGGTGGACGAGGACACGCG
GCAGGAGTCGCTCGACCACGTCGGCTTCCTATTCGCCTACATCGCCGACA
AGGACATCTTCCACAAGTACTACTCCAAGCTGCTGTCCAAGCGCATCATC
CAGCTGACCTCCGTGTCCGACGAGGCCGAGGAGCGCATGCTCAAAAACAT
GCGAAAGGTGACGGTGGCAAGGCCGAGAGAGGAAGCGGGACGTGGCGCCC
TTGGTTTTTGGCTCGCATGTTGTCGTTTGACCATGTTCAGTAACCGTTTT
AAGTACCAAATGTCAGCAGCCTGTGTACGTCCGACCTGTGAAAAAATTGT
TCCAGGTGTACCGCCGTTCATGCGTCATTTTACCGTTTTGCCACGTATGT
AGGCATACAGCCCGTTTCGAGAGGCCGGGATGGGGGGCGTTTTGGGGATA
AGTTCAATACTCGGGTGTGGCGGGGCGCGCCTCAATAAGACAACGAGAGG
CTCGCCGGGGGCACGCTGAGCGAACACGTCTGTCGGGGCGAGGGAAGGCG
TGGATTTGGCGGAGCCCGTGTTTCTAGGTAGCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCGGGCGCCCGCTGCTTTTGCTCTCTTACTTCCTCGTG
TGAGAATGGGACATGCACCGCCCCCACCTATTTTTTCGCACTCAAGTATG
TAACGTCGAGACTGGACCCCCACCCTTGGCACTGCTATGCGAGCGCTGAG
GCGATACGTATGAAGACCTACCTACTGAACTGGAAGCCCTTGTAACCGAC
ATACCTGCATCGTCAGCTCTGTGCCCCCTGCATCGCCCTCTGAAACACGC
AAAATTGGGTCGACCGTTCGTTCGTCCGCCTATCGTGGCGCACCGTCTTC
TCAGATCTCGGGGTTCGAGTATACATCAAAGCTGCAGCGCATGTTCGTAG
ACAAGGCACTGAGCCGGGATCTGCACACGGGCTACGTCGAGTGGCAGGCA
AGCGCGTAGAAAGTATTGGGCAATCTGAGATGAGAAGATCAGATGTTTTG
AGAATCCGATGAACAGCATGGTGGCGTTTCGTCCGCGAGGCTAGGAAGTG
GGTCCCTCCATCTTGGCGTCGGTGGACATCAGGAGCTGCTTGCGGTGCTT
CTTCGGCATTATTCTCATGAAGCATTTCCCGCTCCGCCGCTCCCTCCCCT
CCCCGCGGGTCCTTCACAGGAGACGCGCATTCGGCAGCGGCAGGCGAAAC
TGATCTCGGAGGGTATCGACCCCTCGATTTTTACGTTCACCGGTACGTCC
CTTGCTTCCAAGACGCAATACCTGCAGGCCAGAAAGACATACTCCGGTTT
CCCCCGAAATATCGTAAAACGTGTTGAGAGTAGAAGCAGCCCATGGTGGG
TGTTTTGTTGTGACTGCTTAGATATGATATCAATTCCTTTGTGTTACGGC
TATACTTCTCTTTCCCTTCGTTTTTGGTGAAATGCGCGCAACCGCTGTGT
ATTATGGGAAGCAAGAGAACGCATCCGGCCAGTTCCCACCCAGCCGGGAG
CGGTTCTTGCAGTCGAACAGCCGAAAGCTCATGGAAAACGAACAGAGCCT
ACATGTACGCCTTTGGCTCTTGCTGCTGTCATCAATTCGCGGCACGGGCT
CTCCTATGTGCTGCAGAGTCCACGCAACCACGCAATGAGGTGTGTCTGTC
TTGTCGTGCCGCGTCCTCCGCTGGACGGCGACGGGATACTCACCAGCCAC
ACGCGGGGGGAGGAAAAGGCATCGCATATTTGCGCATGTATTTTTCTGCC
TGAACCAGACCAATCGGCCGCTGCTCTGCTTGTCCTCGGGTCGCTTCGCC
TGCGCAGACGACGAGGAGCACGCCAGCCGAATGATGGAAGACATGAAGGT
TTCCGGCGGCGGCGGCGGGGGAGCCGCGTCGATGTTCGGGAGCAGCGGCG
GCGGCGGGCCCGGCATGGCTTCTACCGCCGCTGCCACGGCCGCCGGTGCG
GCGGCGGGCGCAGCAGCAGCTAGCGGCGGCGGCCTGGGAGCTTTGTCTTC
CTCGGGGGGGGGGGGTCCTTCAACCTCACGCAGGGCTCCACCGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5383:8404..12148+

>mRNA_L-elsbetiae_contig5383.13593.1 ID=mRNA_L-elsbetiae_contig5383.13593.1|Name=mRNA_L-elsbetiae_contig5383.13593.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1620bp|location=Sequence derived from alignment at L-elsbetiae_contig5383:8404..12148+ (Laminarionema elsbetiae ELsaHSoW15)
CTACCCACGGGAGGGGGCAAGCCGAACGTCACCAGTGACGACGTGGTGGC
GGCCATGCTCGAGCTACCCACGGGAGGGGGCAAGCCGAACGTCACCAGTG
ACGACGTGGTGGCGGCCATGCTCGAGGTGTACGAGCACTATAAGGGGCTC
ATGGCGGACTCGTTCGACAGTTCCCCCGGCTTCAGAGCCGTTCTGGACGA
GGCGTGCAAGTCCTTCGTTAACGCCGTGCCGCAGGCGTCGGAGTGGCTCG
CCCGCTACGCCCACTGCCTTCTGGACAAGGTGTACGAGCACTATAAGGGG
CTCATGGCGGACTCGTTCGACAGTTCCCCCGGCTTCAGAGCCGTTCTGGA
CGAGGCGTGCAAGTCCTTCGTTAACGCCGTGCCGCAGGCGTCGGAGTGGC
TCGCCCGCTACGCCCACTGCCTTCTGGACAAGGGGTTCAAGGAGTCCAAG
GTGGACGAGGACACGCGGCAGGAGTCGCTCGACCACGTCGGCTTCCTATT
CGCCTACATCGCCGACAAGGACATCTTCCACAAGTACTACTCCAAGCTGC
TGTCCAAGCGCATCATCCAGCTGACCTCCGTGTCCGACGAGGCCGAGGAG
CGCATGCTCAAAAACATGCGAAAGGGGTTCAAGGAGTCCAAGGTGGACGA
GGACACGCGGCAGGAGTCGCTCGACCACGTCGGCTTCCTATTCGCCTACA
TCGCCGACAAGGACATCTTCCACAAGTACTACTCCAAGCTGCTGTCCAAG
CGCATCATCCAGCTGACCTCCGTGTCCGACGAGGCCGAGGAGCGCATGCT
CAAAAACATGCGAAAGATCTCGGGGTTCGAGTATACATCAAAGCTGCAGC
GCATGTTCGTAGACAAGGCACTGAGCCGGGATCTGCACACGGGCTACGTC
GAGTGGCAGATCTCGGGGTTCGAGTATACATCAAAGCTGCAGCGCATGTT
CGTAGACAAGGCACTGAGCCGGGATCTGCACACGGGCTACGTCGAGTGGC
AGGAGACGCGCATTCGGCAGCGGCAGGCGAAACTGATCTCGGAGGGTATC
GACCCCTCGATTTTTACGTTCACCGGAGACGCGCATTCGGCAGCGGCAGG
CGAAACTGATCTCGGAGGGTATCGACCCCTCGATTTTTACGTTCACCGAC
GACGAGGAGCACGCCAGCCGAATGATGGAAGACATGAAGGTTTCCGGCGG
CGGCGGCGGGGGAGCCGCGTCGATGTTCGGGAGCAGCGGCGGCGGCGGGC
CCGGCATGGCTTCTACCGCCGCTGCCACGGCCGCCGGTGCGGCGGCGGGC
GCAGCAGCAGCTAGCGGCGGCGGCCTGGGAGCTTTGTCTTCCTCGGGGGG
GGGGGGTCCTTCAACCTCACGCAGGGCTCCACCGACGACGAGGAGCACGC
CAGCCGAATGATGGAAGACATGAAGGTTTCCGGCGGCGGCGGCGGGGGAG
CCGCGTCGATGTTCGGGAGCAGCGGCGGCGGCGGGCCCGGCATGGCTTCT
ACCGCCGCTGCCACGGCCGCCGGTGCGGCGGCGGGCGCAGCAGCAGCTAG
CGGCGGCGGCCTGGGAGCTTTGTCTTCCTCGGGGGGGGGGGGTCCTTCAA
CCTCACGCAGGGCTCCACCG
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