mRNA_L-elsbetiae_contig538.13586.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig538.13586.1
Unique NamemRNA_L-elsbetiae_contig538.13586.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig538.13586.1 vs. uniprot
Match: A0A6H5KUM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM0_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 1.600e-67
Identity = 130/242 (53.72%), Postives = 159/242 (65.70%), Query Frame = 1 
Query:    4 AQENVRDQLESHWRAFDALAGNQNGANEAIIRALDVFEGARGAFTAGQAAAGNPASXXXXXXXXXXXXAMNAFGGQQ-DAPWAS-PTAMPRGNANADNSDDGARRAYFRAEEALMLAREQLARSEATLQEMGEVVDRAKMCIGSCYNTEQVASRQERKDVRARASLQALSRGDSGCAMSPVEMARAMAGLLRMHQSEFEMQETIICGLGYDTPRETVTAYREALGLRPFMDDSFRSEVQEVR 723
            + + +R Q+E HWR FD+LA  Q+  NEAIIRA+DVFEGARGAF A Q A G           XXXX A + FG  Q +  WAS                   RRAY RAEE                 +M E V+RA+ CI S YNT+ VASR+ER++VR+RASLQAL RGDSGCAM+PVEMARAMAGLLRMHQSE EMQE+I+ GLGY+T  E++T YREALG+RP++DD +RS+ QE+R
Sbjct:    3 SHQGMRAQIEGHWRDFDSLAEMQSRGNEAIIRAIDVFEGARGAFIAEQEARG---------AGXXXXAAPSMFGAHQWEGGWASGXXXXXXXXXXXXXXXXXXRRAYVRAEEXXXXXXXXXXXXXXXXXQMAEEVERARACINSFYNTDDVASREERREVRSRASLQALDRGDSGCAMTPVEMARAMAGLLRMHQSELEMQESIVYGLGYETSAESITGYREALGMRPYLDDQYRSQAQEIR 235
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BLAST of mRNA_L-elsbetiae_contig538.13586.1 vs. uniprot
Match: D8LS45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS45_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.880e-19
Identity = 45/87 (51.72%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:  529 MSPVEMARAMAGLLRMHQSEFEMQ----------------------ETIICGLGYDTPRETVTAYREALGLRPFMDDSFRSEVQEVR 723
            M+PV+M+RAMAGLLRMHQSE EMQ                      E+I+ GLGY+TP E +T+YREALG+RP +DD  RS+ QE+R
Sbjct:    1 MTPVDMSRAMAGLLRMHQSELEMQSRPSEEERERLQTXXXXXITTKESIVYGLGYETPAELITSYREALGMRPHLDDQHRSQAQEIR 87
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BLAST of mRNA_L-elsbetiae_contig538.13586.1 vs. uniprot
Match: D8LS46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS46_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.890e-10
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    4 AQENVRDQLESHWRAFDALAGNQNGANEAIIRALDVFEGARGAFTAGQAAAGNPA 168
            + + +R Q+E HWR FD+LA  Q+G NEAIIRA+DVFEGARGAF A Q A G  A
Sbjct:    3 SHQGMRAQIEGHWRNFDSLAEMQSGGNEAIIRAIDVFEGARGAFIAEQEARGGGA 57
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig538.13586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KUM0_9PHAE1.600e-6753.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS45_ECTSI3.880e-1951.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LS46_ECTSI1.890e-1061.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig538contigL-elsbetiae_contig538:15572..20006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_004850.1
Exons4
Model size738
Cds size738
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig538.13586.1prot_L-elsbetiae_contig538.13586.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig538 15572..20006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816560.784088-CDS-L-elsbetiae_contig538:15571..156891622816560.784088-CDS-L-elsbetiae_contig538:15571..15689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig538 15572..15689 +
1691683648.0945597-CDS-L-elsbetiae_contig538:15571..156891691683648.0945597-CDS-L-elsbetiae_contig538:15571..15689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig538 15572..15689 +
1622816560.7954612-CDS-L-elsbetiae_contig538:15856..161621622816560.7954612-CDS-L-elsbetiae_contig538:15856..16162Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig538 15857..16162 +
1691683648.1069927-CDS-L-elsbetiae_contig538:15856..161621691683648.1069927-CDS-L-elsbetiae_contig538:15856..16162Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig538 15857..16162 +
1622816560.8106256-CDS-L-elsbetiae_contig538:19246..194221622816560.8106256-CDS-L-elsbetiae_contig538:19246..19422Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig538 19247..19422 +
1691683648.1174388-CDS-L-elsbetiae_contig538:19246..194221691683648.1174388-CDS-L-elsbetiae_contig538:19246..19422Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig538 19247..19422 +
1622816560.8243608-CDS-L-elsbetiae_contig538:19868..200061622816560.8243608-CDS-L-elsbetiae_contig538:19868..20006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig538 19869..20006 +
1691683648.1361008-CDS-L-elsbetiae_contig538:19868..200061691683648.1361008-CDS-L-elsbetiae_contig538:19868..20006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig538 19869..20006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig538.13586.1

>prot_L-elsbetiae_contig538.13586.1 ID=prot_L-elsbetiae_contig538.13586.1|Name=mRNA_L-elsbetiae_contig538.13586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=246bp
MAQENVRDQLESHWRAFDALAGNQNGANEAIIRALDVFEGARGAFTAGQA
AAGNPASAAAAVASSASAAAMNAFGGQQDAPWASPTAMPRGNANADNSDD
GARRAYFRAEEALMLAREQLARSEATLQEMGEVVDRAKMCIGSCYNTEQV
ASRQERKDVRARASLQALSRGDSGCAMSPVEMARAMAGLLRMHQSEFEMQ
ETIICGLGYDTPRETVTAYREALGLRPFMDDSFRSEVQEVRARGM*
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mRNA from alignment at L-elsbetiae_contig538:15572..20006+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig538.13586.1 ID=mRNA_L-elsbetiae_contig538.13586.1|Name=mRNA_L-elsbetiae_contig538.13586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4435bp|location=Sequence derived from alignment at L-elsbetiae_contig538:15572..20006+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCAAGAAAATGTAAGGGATCAACTCGAATCACACTGGCGTGCTTT
CGATGCTCTGGCAGGCAACCAAAATGGGGCTAACGAGGCGATCATCCGCG
CGCTGGATGTATTTGAAGGTATGTACGCATGATACACACGAGATGGGAGC
AATCTTCAACCTCCACGAGGGTCATGCCTCTTCACAGTTGGTTACCCCAC
GTCTATCAGTCAGCTGCTTTTGTTGTTATTCTGTTGTCATGGACGAATCC
TCCTCCCTCGCTCTCGCTCTCGCGCGCTAACGAAGGCGCTCGGGGAGCGT
TCACGGCAGGGCAGGCAGCAGCAGGCAACCCCGCATCAGCAGCAGCAGCA
GTAGCATCATCAGCTTCGGCGGCAGCAATGAATGCATTCGGGGGGCAGCA
GGATGCGCCATGGGCGTCGCCAACGGCGATGCCCCGGGGAAATGCAAACG
CGGACAACAGCGACGACGGAGCTCGCCGTGCGTACTTCCGGGCGGAGGAG
GCCCTGATGCTGGCACGAGAACAGCTGGCGCGCAGCGAGGCAACTCTGCA
GGAAATGGGAGAGGTGGTCGATCGAGCTAAGATGTGCATTGGTGAGGGAA
GGCGGGGGGGGGGGATCAGGCAGAGAGAAGAAGAAGAGAGAGAGAGAGAG
AGATAGAGAGAGAGGGTGTTTCCTGGATGAATGTGCTCTACAGGAGTCAC
ATGGAAACGGGCCGCGAAAAAAAGGGAGTTGGTGTTCGCTCCGTGAGCCC
GATTCTCATTGTACAGCCCGATTCTCATCGTACATAGGACAGCATAGGAC
CAAAAATCAAATCGAAAAGTGAGAAACCACCCGACGATGTCACTGGGGGC
CAAAAATGAGTACTCAGCAGTCAGCAAGAAAGCTTAGCAACACCCAGTTC
TCGGCCCCTACGGCACCGATCGCAGTCGGAGCACTTGAGGCGTGATATCT
CTGGGCGTGCCAGTCGTGTAGGGCATGGGCGAAGTAGAATCCGATTCGAA
CTTTTCGACTGGGGAACCCAGTCAGAAATGTATACGCAATCCGATCGCAC
CGCCGGTCGAAAAGTTCAAGTCGGATTATACTCCGCCACAAAGCTCTCGC
CACACGCAACGCCCATGCCCCACACGACTGGCACGCCCAGAGATATCACC
ATGGAGCACACGCCTGAAGTGCTCCGACTGAGATCGGTGCCCTGGGGGGC
GAGAACTGGGTGGTGCTCGGCTCTTTCTTGCCGACTGCTGGGTACTCACG
TATTTAGCGCCCGGTGGCATCGTCGGGTAGTTGCTCACTTTTGATTCCGT
GATTTTTTGGTCCCATGTGAATCGGCCTGATGGGGAACCCATACATCCCA
GAGGGGCTTCGACGATGCGATCAGACATGTGTGCTCAAGTTAAAAAAACG
ACCCAGTTGCATCCGTTGCACCGTGTTATGTCCGTTACACCTTGTGGGTC
CACTGCTTGTGTGGCTTTCGTGTCCTAAACTGGTACCTGGTGTGCACTAC
AAGCAAGCCTATTGACTACAGCGTAGTAGCTGTGATCCGAACATAAAAGT
AGTGACCATTATTGGCGGGTGGTTGTGTCTAGCTACCCTGTTTTAAGTTT
TAAGCACGGAAAGAAAGCGCCTGTTTCTTATCCTACCGGCTGTGTCACTA
ACGGTGCGGAGGTCCTGATTAGAGGTCGGTGTGTGTTCTTCGCGAACACA
ACATCCGCCGCAACAGCCACCACACCACACACCACACCATGACAAATATC
TTTGTCCACCGACGCACGAAACACCCCCATACTAGTTAGTGACATAATGA
GCCGCACACCAGCACCGGCTCAATACCTTGCAGTAGTCTGACCCACCCCA
CCACCCGCGGACCCACGGCCCCAATCCCACCCGGCAGTACAATAGTAACG
TGACGTGCCACACATGCGTTCACATGGTTGATGCCACTGGCGCAACGTTG
TGGCTCGAGGCGCATTCTCTGCATCCTCTGGCGAAAACAGCGATTTTTGC
CAGCACACAACCCTCCCTGCCAGATGTGTGTTGAGCTATGTGCAGGCTAT
ATGCTCGGCTGTCAACTTTCTCTCTGTCTTTCTCACTCGCGCGCACGCAC
ACACACACACACACACACACACACACACACACACGGGACTTGACTCTTCC
CTTGGTCAAAATTTCAGATCAACACGAGAAAGGGAGATATGGCGCTGAGC
AAAACGCTTTGATCGCGATTGTGAAGTCAATTCGTCGAGGAGGTACACCA
AAGAGCTCCGAACAAATAGCGCGAGCAGAGCTGTGGACACATCTGCTCAA
TTTCGTCTGGAAAGACTGAGAGGCAGACACATGATGCATATTTTGTCTCC
CGTACCTTGCTTTTCTCGCACGCATACGCGCGTGCTTTGGAATTACCCTT
CTGTGCCATCAGCACTATATCCCTGCATGACCAGTGAACCTACGCCCCCT
TCCCCCGCCAGTGTTGTCTTGCTCCTTTCTCCCCCCAGCGTCGGTGCTGT
GTGTGTTACCTGTCTCGGTAGTCTCTACTCTGCTTCAATTTAGCGAATCT
CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATCTCCGGTTCG
TTTCCCTTTTTTTGTGAACTCCCGGGATGGTTTGATCCTGTCTCGGGATC
TCCGAAATAAGTTTGGACAAGCGACCGTTAAGCACGGCCATCTCTTGTCG
GAGCACAGCTAAACAGGCGAGACGAACATTTGCCTAATATATCTTCCCTC
TCAGAAAACATCAGATCGTCAATCGGTGCTCTATAAGCTTTGTTCTGGCC
GAAATGGAGGGTCAGTTTTGACGGTCGTATTCAAATTTGGAGGGGCGCTA
CATATGCGCGATCGGCGATCGGACTGACATTTTGCCGGTATTTAGAGTAT
TTTTTTCCTTTCTGGGATGAAGGGGAAAAAAGGTTGCGGCTTCGCCGCTC
CGCGGCTCATTATAATTTGTGTGCATGCCCAGACGCTCGCCTACCGCGCT
TGGTTTAAATAAAGTTTGAAGTCGTTCATACCATACGCCTTTACGATAGG
TTGAATATTTTCATGAGATATTTCATGCTTCTGTCTCCGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAATGGAGTGAAAACCACC
ACCCATGCCCTCTCAATCATTTGGCGTGTTTTTCAACTTCGAAGTATCAT
GTCATGGCAACGCTTTCTTACCCTATCCTTCTCCCCTCTCACGAAAGAGC
ATCAATCAGCCAGGCCGAGCAGAAGGGTGGTGGTGTAAAATCTCACCCGA
ACTCAGTCCCTAAGGCTCTCGCCAGTCCGGATAGAAGTCGAAGTTTTAGT
TTTTCGTTGCCGAGATGAACGTCCCGTACTAGCAGAGCAGAGCAGAGCAG
AGCAGAGCAGCAAATGGAGTGAAAAAAAATACCCCATGCCTCCAAATATT
GACGCCTTGCTTTGTCGACCGTCTCGTAGGCATGCAAACACTCTTGCTTT
ACTACTGTCTTGCTGTGATCGATGGGTGCAAGACTGGTCTTGAAATCTCG
ACAATCGCTCTGCTCGACGCTTCTACATGAATGCCTGTATGGTGCTTACT
CTTGAACTTTGCGGCACGCACCCCTACCTCCCTCGCAATCTCTCAAAAAA
CTCGTCTTTTTTTTTTGCGTTTCAGGGTCATGCTACAACACAGAGCAGGT
GGCGAGCCGGCAGGAACGCAAAGACGTTCGGGCGAGGGCATCCCTCCAGG
CGCTTAGCCGCGGCGATTCTGGCTGCGCCATGTCGCCCGTGGAAATGGCG
AGGGCGATGGCAGGGCTGCTACGAATGCACCAGAGCGAGTTCGAGATGCA
GGTACACATGTGTGCTTATGTACTTGCCGTCGCCATTGCGTTCTGCCCCC
AAGCTCATATCGACCTCTTTTACGGAACTTTGTGTGACCAGGCGCCTCCA
AAGATAGATAGAGAGAAAGGCTTAATATTGTACCAGTCGCGTATTGTAGT
CAACAGCTTCTCCAGAGCGACACCGAGGTTTCGCGCGTCACCGAAAAGGA
ACCGGCTCTGTTGCTGTCGGTTCTACATACGCTCCTGGTGCCGATGGCGC
GTACTGCTGTAGTACGACGCTAAGCAGTCGATGCAGGAACCACCTGTAGA
ACGTTGGTTGGGTGGCCGGTGGGTAAGCATGACGAGTGTGTGTATATATG
CGCGGATTGAAAAAAACCAGAACGAAACAATACTCTTGTCCCGGTGTTGG
ATCTAATTTATGCCGCCGCCGTGGCCGCCGTTGCTGTCTTGCCAAAGGAA
ACCATCATTTGCGGTCTCGGGTACGACACTCCGCGGGAAACCGTCACGGC
TTACCGAGAAGCGCTGGGTCTCCGACCTTTCATGGACGACAGTTTCCGGT
CTGAAGTACAGGAGGTGAGAGCGAGAGGCATGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig538:15572..20006+

>mRNA_L-elsbetiae_contig538.13586.1 ID=mRNA_L-elsbetiae_contig538.13586.1|Name=mRNA_L-elsbetiae_contig538.13586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1476bp|location=Sequence derived from alignment at L-elsbetiae_contig538:15572..20006+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCAAGAAAATGTAAGGGATCAACTCGAATCACACTGGCGTGCTTT
CGATGCTCTGGCAGGCAACCAAAATGGGGCTAACGAGGCGATCATCCGCG
CGCTGGATGTATTTGAAGATGGCTCAAGAAAATGTAAGGGATCAACTCGA
ATCACACTGGCGTGCTTTCGATGCTCTGGCAGGCAACCAAAATGGGGCTA
ACGAGGCGATCATCCGCGCGCTGGATGTATTTGAAGGCGCTCGGGGAGCG
TTCACGGCAGGGCAGGCAGCAGCAGGCAACCCCGCATCAGCAGCAGCAGC
AGTAGCATCATCAGCTTCGGCGGCAGCAATGAATGCATTCGGGGGGCAGC
AGGATGCGCCATGGGCGTCGCCAACGGCGATGCCCCGGGGAAATGCAAAC
GCGGACAACAGCGACGACGGAGCTCGCCGTGCGTACTTCCGGGCGGAGGA
GGCCCTGATGCTGGCACGAGAACAGCTGGCGCGCAGCGAGGCAACTCTGC
AGGAAATGGGAGAGGTGGTCGATCGAGCTAAGATGTGCATTGGCGCTCGG
GGAGCGTTCACGGCAGGGCAGGCAGCAGCAGGCAACCCCGCATCAGCAGC
AGCAGCAGTAGCATCATCAGCTTCGGCGGCAGCAATGAATGCATTCGGGG
GGCAGCAGGATGCGCCATGGGCGTCGCCAACGGCGATGCCCCGGGGAAAT
GCAAACGCGGACAACAGCGACGACGGAGCTCGCCGTGCGTACTTCCGGGC
GGAGGAGGCCCTGATGCTGGCACGAGAACAGCTGGCGCGCAGCGAGGCAA
CTCTGCAGGAAATGGGAGAGGTGGTCGATCGAGCTAAGATGTGCATTGGG
TCATGCTACAACACAGAGCAGGTGGCGAGCCGGCAGGAACGCAAAGACGT
TCGGGCGAGGGCATCCCTCCAGGCGCTTAGCCGCGGCGATTCTGGCTGCG
CCATGTCGCCCGTGGAAATGGCGAGGGCGATGGCAGGGCTGCTACGAATG
CACCAGAGCGAGTTCGAGATGCAGGGTCATGCTACAACACAGAGCAGGTG
GCGAGCCGGCAGGAACGCAAAGACGTTCGGGCGAGGGCATCCCTCCAGGC
GCTTAGCCGCGGCGATTCTGGCTGCGCCATGTCGCCCGTGGAAATGGCGA
GGGCGATGGCAGGGCTGCTACGAATGCACCAGAGCGAGTTCGAGATGCAG
GAAACCATCATTTGCGGTCTCGGGTACGACACTCCGCGGGAAACCGTCAC
GGCTTACCGAGAAGCGCTGGGTCTCCGACCTTTCATGGACGACAGTTTCC
GGTCTGAAGTACAGGAGGTGAGAGCGAGAGGCATGTAGGAAACCATCATT
TGCGGTCTCGGGTACGACACTCCGCGGGAAACCGTCACGGCTTACCGAGA
AGCGCTGGGTCTCCGACCTTTCATGGACGACAGTTTCCGGTCTGAAGTAC
AGGAGGTGAGAGCGAGAGGCATGTAG
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