mRNA_L-elsbetiae_contig5376.13578.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5376.13578.1
Unique NamemRNA_L-elsbetiae_contig5376.13578.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5376.13578.1 vs. uniprot
Match: A0A8E6D4V4_9PHAE (Uncharacterized protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D4V4_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 9.870e-51
Identity = 81/97 (83.51%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    1 MINIGFGANFILGLLIICGALFLYFIRNIRPELARDEDIFFTTLGLIYGCILIIHGWRLDPILLFSQVLIVSLCLAAGWENIRLRALVAKKIKEQLK 291
            M+NI FGANFILGLL++ G L LYF+R I+PE+ARDEDIFFTTLGLIY CILIIHGWRLDPILLFSQVL+VSLCLAAGWENIRLR L+AKKIKE+LK
Sbjct:    1 MVNITFGANFILGLLVMTGVLILYFLRMIKPEVARDEDIFFTTLGLIYSCILIIHGWRLDPILLFSQVLLVSLCLAAGWENIRLRGLIAKKIKEKLK 97
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BLAST of mRNA_L-elsbetiae_contig5376.13578.1 vs. uniprot
Match: A0A8F0F7Z8_9PHAE (Uncharacterized protein n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A8F0F7Z8_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 7.160e-50
Identity = 82/97 (84.54%), Postives = 89/97 (91.75%), Query Frame = 1 
Query:    1 MINIGFGANFILGLLIICGALFLYFIRNIRPELARDEDIFFTTLGLIYGCILIIHGWRLDPILLFSQVLIVSLCLAAGWENIRLRALVAKKIKEQLK 291
            MINI FGANF+LGL+II G L LYF+R IRPEL+RDEDIFFTTLGLIYG ILIIHGWRLDPILLFSQVL+VS+ LAAGWENIRLR L+AKKIKEQLK
Sbjct:    1 MINIAFGANFLLGLIIILGVLILYFLRIIRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEQLK 97
[Close]
BLAST of mRNA_L-elsbetiae_contig5376.13578.1 vs. uniprot
Match: A0A0S0GLI0_COSCS (Ycf66 n=28 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0GLI0_COSCS)

HSP 1 Score: 160 bits (406), Expect = 2.050e-49
Identity = 82/97 (84.54%), Postives = 89/97 (91.75%), Query Frame = 1 
Query:    1 MINIGFGANFILGLLIICGALFLYFIRNIRPELARDEDIFFTTLGLIYGCILIIHGWRLDPILLFSQVLIVSLCLAAGWENIRLRALVAKKIKEQLK 291
            MINI FGANF+LGL+II G L LYF+R IRPEL+RDEDIFFTTLGLIYG ILIIHGWRLDPILLFSQVL+VS+ LAAGWENIRLR L+AKKIKEQLK
Sbjct:    1 MINIVFGANFLLGLIIILGVLILYFLRIIRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEQLK 97
[Close]
BLAST of mRNA_L-elsbetiae_contig5376.13578.1 vs. uniprot
Match: A0A109QSJ6_9PHAE (Ycf66 n=13 Tax=Fucales TaxID=3009 RepID=A0A109QSJ6_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 8.890e-48
Identity = 80/96 (83.33%), Postives = 86/96 (89.58%), Query Frame = 1 
Query:    1 MINIGFGANFILGLLIICGALFLYFIRNIRPELARDEDIFFTTLGLIYGCILIIHGWRLDPILLFSQVLIVSLCLAAGWENIRLRALVAKKIKEQL 288
            MINI FGANF+LGL+II G L LYF+R IRPEL RDEDIFFTTLGLIYG ILIIHGWRLDPILLFSQVL+VS+ L AGWENIRLR L+AKKIKEQL
Sbjct:    1 MINIVFGANFLLGLIIIIGVLLLYFLRIIRPELCRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSVVLVAGWENIRLRGLIAKKIKEQL 96
[Close]
BLAST of mRNA_L-elsbetiae_contig5376.13578.1 vs. uniprot
Match: A0A141BSB5_9PHAE (Ycf66 n=3 Tax=Sargassum TaxID=3015 RepID=A0A141BSB5_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 5.140e-47
Identity = 79/96 (82.29%), Postives = 85/96 (88.54%), Query Frame = 1 
Query:    1 MINIGFGANFILGLLIICGALFLYFIRNIRPELARDEDIFFTTLGLIYGCILIIHGWRLDPILLFSQVLIVSLCLAAGWENIRLRALVAKKIKEQL 288
            MINI FGANF+LGL+ I G L LYF+R IRPEL RDEDIFFTTLGLIYG ILIIHGWRLDPILLFSQVL+VS+ L AGWENIRLR L+AKKIKEQL
Sbjct:    1 MINIVFGANFLLGLITIIGVLLLYFLRIIRPELCRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSVVLVAGWENIRLRGLIAKKIKEQL 96
[Close]
BLAST of mRNA_L-elsbetiae_contig5376.13578.1 vs. uniprot
Match: D1J770_ECTSI (Uncharacterized protein ycf66 n=7 Tax=Ectocarpales TaxID=2877 RepID=D1J770_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 5.550e-47
Identity = 77/95 (81.05%), Postives = 87/95 (91.58%), Query Frame = 1 
Query:    1 MINIGFGANFILGLLIICGALFLYFIRNIRPELARDEDIFFTTLGLIYGCILIIHGWRLDPILLFSQVLIVSLCLAAGWENIRLRALVAKKIKEQ 285
            MINI FGANF+LGLLII G L LYF+R++RPEL+RDEDIFFTTLGLIYG ILIIHGWRLDPILLFSQVL+VSL LAAGWENIRLR L+A K+K++
Sbjct:    1 MINIVFGANFLLGLLIILGVLILYFLRSVRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSLVLAAGWENIRLRGLIAAKLKKK 95
[Close]
BLAST of mRNA_L-elsbetiae_contig5376.13578.1 vs. uniprot
Match: A0A7S6ZP91_9STRA (Ycf66 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZP91_9STRA)

HSP 1 Score: 152 bits (385), Expect = 2.800e-46
Identity = 73/96 (76.04%), Postives = 84/96 (87.50%), Query Frame = 1 
Query:    1 MINIGFGANFILGLLIICGALFLYFIRNIRPELARDEDIFFTTLGLIYGCILIIHGWRLDPILLFSQVLIVSLCLAAGWENIRLRALVAKKIKEQL 288
            MINIGFGAN +LG  +I G L LYF+R +RPEL+RDEDIFF TLGLIY CILIIHGWRLDPILLFSQVLI+S+ L+ GWENIRLR L+AKKIK+Q+
Sbjct:    1 MINIGFGANLVLGFFVILGMLLLYFVRIVRPELSRDEDIFFATLGLIYSCILIIHGWRLDPILLFSQVLIISIILSTGWENIRLRGLIAKKIKDQI 96
[Close]
BLAST of mRNA_L-elsbetiae_contig5376.13578.1 vs. uniprot
Match: B7T208_VAULI (Uncharacterized protein ycf66 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T208_VAULI)

HSP 1 Score: 150 bits (380), Expect = 1.950e-45
Identity = 74/96 (77.08%), Postives = 83/96 (86.46%), Query Frame = 1 
Query:    1 MINIGFGANFILGLLIICGALFLYFIRNIRPELARDEDIFFTTLGLIYGCILIIHGWRLDPILLFSQVLIVSLCLAAGWENIRLRALVAKKIKEQL 288
            MINIGFG N ILG L + G   LY +R +RPEL+RDEDIFFTTLGLIY CILIIHGWRLDPILLFSQVLI+++ LAAGWENIRLR LVAKKIK+Q+
Sbjct:    1 MINIGFGTNLILGFLFVIGVTLLYLVRIVRPELSRDEDIFFTTLGLIYSCILIIHGWRLDPILLFSQVLILAISLAAGWENIRLRGLVAKKIKDQI 96
[Close]
BLAST of mRNA_L-elsbetiae_contig5376.13578.1 vs. uniprot
Match: A0A1N7TJI4_9PHAE (Ycf66 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1N7TJI4_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.110e-44
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    1 MINIGFGANFILGLLIICGALFLYFIRNIRPELARDEDIFFTTLGLIYGCILIIHGWRLDPILLFSQVLIVSLCLAAGWENIRLRALVAKKIK 279
            MINI FGANF+LGL+II G L LYF+R IRPEL RDEDIFFTTLGLIYG ILIIHGWRLDPILLFSQVL+VS+ L AGWENIRLR L+AKK++
Sbjct:    1 MINIVFGANFLLGLIIIIGVLLLYFLRIIRPELCRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSVVLVAGWENIRLRGLIAKKLR 93
[Close]
BLAST of mRNA_L-elsbetiae_contig5376.13578.1 vs. uniprot
Match: A0A023HB98_9STRA (Uncharacterized protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A023HB98_9STRA)

HSP 1 Score: 136 bits (343), Expect = 6.840e-40
Identity = 69/101 (68.32%), Postives = 81/101 (80.20%), Query Frame = 1 
Query:    1 MINIGFGANFILGLLIICGALFLYFIRNIRPELARDEDIFFTTLGLIYGCILIIHGWRLDPILLFSQVLIVSLCLAAGWENIRLRALVAK--KIKEQLKSK 297
            MINIGFG N ILG+++  G   LY +R ++PE+ARDEDIFF T+GL+YGCILIIHGWRLDPILLFSQVLI+S  L AGWENIRLR L+A   K K+Q K K
Sbjct:    1 MINIGFGPNIILGIILWIGVTLLYLLRIVKPEVARDEDIFFATIGLLYGCILIIHGWRLDPILLFSQVLIISSLLVAGWENIRLRGLLANTTKFKKQKKQK 101
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5376.13578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8E6D4V4_9PHAE9.870e-5183.51Uncharacterized protein n=1 Tax=Ishige okamurae Ta... [more]
A0A8F0F7Z8_9PHAE7.160e-5084.54Uncharacterized protein n=3 Tax=Phaeophyceae TaxID... [more]
A0A0S0GLI0_COSCS2.050e-4984.54Ycf66 n=28 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S... [more]
A0A109QSJ6_9PHAE8.890e-4883.33Ycf66 n=13 Tax=Fucales TaxID=3009 RepID=A0A109QSJ6... [more]
A0A141BSB5_9PHAE5.140e-4782.29Ycf66 n=3 Tax=Sargassum TaxID=3015 RepID=A0A141BSB... [more]
D1J770_ECTSI5.550e-4781.05Uncharacterized protein ycf66 n=7 Tax=Ectocarpales... [more]
A0A7S6ZP91_9STRA2.800e-4676.04Ycf66 n=1 Tax=Schizocladia ischiensis TaxID=196139... [more]
B7T208_VAULI1.950e-4577.08Uncharacterized protein ycf66 n=1 Tax=Vaucheria li... [more]
A0A1N7TJI4_9PHAE1.110e-4480.65Ycf66 n=1 Tax=Coccophora langsdorfii TaxID=74099 R... [more]
A0A023HB98_9STRA6.840e-4068.32Uncharacterized protein n=1 Tax=Leptocylindrus dan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5376contigL-elsbetiae_contig5376:3145..3441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.3
Seed ortholog evalue5.9e-35
Seed eggNOG ortholog2880.D1J770
Preferred nameycf66
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Ycf66 protein N-terminus
EggNOG OGs2901P@1,2SANI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816560.1313999-CDS-L-elsbetiae_contig5376:3144..34411622816560.1313999-CDS-L-elsbetiae_contig5376:3144..3441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5376 3145..3441 -
1691683647.6636484-CDS-L-elsbetiae_contig5376:3144..34411691683647.6636484-CDS-L-elsbetiae_contig5376:3144..3441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5376 3145..3441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5376.13578.1prot_L-elsbetiae_contig5376.13578.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5376 3145..3441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5376.13578.1

>prot_L-elsbetiae_contig5376.13578.1 ID=prot_L-elsbetiae_contig5376.13578.1|Name=mRNA_L-elsbetiae_contig5376.13578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
MINIGFGANFILGLLIICGALFLYFIRNIRPELARDEDIFFTTLGLIYGC
ILIIHGWRLDPILLFSQVLIVSLCLAAGWENIRLRALVAKKIKEQLKSK
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mRNA from alignment at L-elsbetiae_contig5376:3145..3441-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5376.13578.1 ID=mRNA_L-elsbetiae_contig5376.13578.1|Name=mRNA_L-elsbetiae_contig5376.13578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=297bp|location=Sequence derived from alignment at L-elsbetiae_contig5376:3145..3441- (Laminarionema elsbetiae ELsaHSoW15)
ATGATAAATATAGGATTTGGAGCTAATTTTATTTTAGGATTGCTTATAAT
TTGTGGAGCATTATTTTTATATTTTATAAGAAATATTAGACCAGAATTAG
CACGAGATGAAGATATTTTTTTTACAACATTAGGACTAATTTATGGCTGT
ATTTTAATTATACATGGGTGGAGATTAGATCCAATTTTATTATTTAGTCA
AGTCTTGATTGTAAGTCTTTGTCTTGCTGCTGGATGGGAAAATATTAGAT
TACGAGCTTTAGTAGCAAAAAAAATTAAAGAACAATTAAAATCTAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5376:3145..3441-

>mRNA_L-elsbetiae_contig5376.13578.1 ID=mRNA_L-elsbetiae_contig5376.13578.1|Name=mRNA_L-elsbetiae_contig5376.13578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig5376:3145..3441- (Laminarionema elsbetiae ELsaHSoW15)
ATGATAAATATAGGATTTGGAGCTAATTTTATTTTAGGATTGCTTATAAT
TTGTGGAGCATTATTTTTATATTTTATAAGAAATATTAGACCAGAATTAG
CACGAGATGAAGATATTTTTTTTACAACATTAGGACTAATTTATGGCTGT
ATTTTAATTATACATGGGTGGAGATTAGATCCAATTTTATTATTTAGTCA
AGTCTTGATTGTAAGTCTTTGTCTTGCTGCTGGATGGGAAAATATTAGAT
TACGAGCTTTAGTAGCAAAAAAAATTAAAGAACAATTAAAATCTAAAATG
ATAAATATAGGATTTGGAGCTAATTTTATTTTAGGATTGCTTATAATTTG
TGGAGCATTATTTTTATATTTTATAAGAAATATTAGACCAGAATTAGCAC
GAGATGAAGATATTTTTTTTACAACATTAGGACTAATTTATGGCTGTATT
TTAATTATACATGGGTGGAGATTAGATCCAATTTTATTATTTAGTCAAGT
CTTGATTGTAAGTCTTTGTCTTGCTGCTGGATGGGAAAATATTAGATTAC
GAGCTTTAGTAGCAAAAAAAATTAAAGAACAATTAAAATCTAAA
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