mRNA_L-elsbetiae_contig5374.13572.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5374.13572.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI) HSP 1 Score: 232 bits (592), Expect = 4.320e-68 Identity = 110/125 (88.00%), Postives = 113/125 (90.40%), Query Frame = 1 Query: 1 AGAAAGVG---GPRWGRWVHPTHLFHECVSAGKLTTAAWYLPLIRDDVAYDAAQRHVGTDGPLSDEERSRSMPLEMWAVTGHGWSYGLSHALSCVLLLASLSSNQHTFLPEVWLFARKREQSAPH 366 AG VG GPRWGRWVHPTHLFHECVS+GKLTTAAWYLPLIRDDVAYDAAQRHVG +GPLS+EERSR MPLEMWAVTG GW YGLSHALSCVLLLASLSSNQH FLPEVWLFARKREQSAPH Sbjct: 2176 AGGVGQVGRCVGPRWGRWVHPTHLFHECVSSGKLTTAAWYLPLIRDDVAYDAAQRHVGPNGPLSEEERSRLMPLEMWAVTGEGWPYGLSHALSCVLLLASLSSNQHAFLPEVWLFARKREQSAPH 2300
BLAST of mRNA_L-elsbetiae_contig5374.13572.1 vs. uniprot
Match: A0A6H5KDH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH8_9PHAE) HSP 1 Score: 227 bits (578), Expect = 9.110e-67 Identity = 107/125 (85.60%), Postives = 112/125 (89.60%), Query Frame = 1 Query: 1 AGAAAGVG---GPRWGRWVHPTHLFHECVSAGKLTTAAWYLPLIRDDVAYDAAQRHVGTDGPLSDEERSRSMPLEMWAVTGHGWSYGLSHALSCVLLLASLSSNQHTFLPEVWLFARKREQSAPH 366 AG VG GPRWGRWVHPTHLFH+CVS+GKLTTAAWYLPLIRDDVA+DAAQRHVG +GPLS+EERSR MPLEMWAVTG GW YGLSHALSCVLLLASLSSNQH LPEVWLFARKREQSAPH Sbjct: 327 AGGVGQVGRCVGPRWGRWVHPTHLFHDCVSSGKLTTAAWYLPLIRDDVAFDAAQRHVGPNGPLSEEERSRLMPLEMWAVTGDGWPYGLSHALSCVLLLASLSSNQHALLPEVWLFARKREQSAPH 451
BLAST of mRNA_L-elsbetiae_contig5374.13572.1 vs. uniprot
Match: A0A835YSR2_9STRA (RIC1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR2_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 5.690e-21 Identity = 53/115 (46.09%), Postives = 64/115 (55.65%), Query Frame = 1 Query: 19 VGGPRWGRWVHPTHLFHECVSAGKLTTAAWYLPLIRDDVAYDAAQRHVGTDGPLSDEERSRSMPLEMWAVTGHGWSYGLSHALSCVLLLASLSS-NQHTFLPEVWLFARKREQSA 360 +GG HPTHL H C+ G+L TAAW+LPL+ D A R E +P M +TG WS+GLSHAL C LLL L + + H LPEVWLFA KRE+SA Sbjct: 875 LGGEGGYEGAHPTHLLHACLEQGRLATAAWFLPLVSDHAVSAARSRSAPP------HELEALLPPPMLPLTGAEWSHGLSHALCCCLLLRCLEAPHTHALLPEVWLFACKRERSA 983 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5374.13572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5374.13572.1 >prot_L-elsbetiae_contig5374.13572.1 ID=prot_L-elsbetiae_contig5374.13572.1|Name=mRNA_L-elsbetiae_contig5374.13572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp AGAAAGVGGPRWGRWVHPTHLFHECVSAGKLTTAAWYLPLIRDDVAYDAAback to top mRNA from alignment at L-elsbetiae_contig5374:6221..7704- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5374.13572.1 ID=mRNA_L-elsbetiae_contig5374.13572.1|Name=mRNA_L-elsbetiae_contig5374.13572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1484bp|location=Sequence derived from alignment at L-elsbetiae_contig5374:6221..7704- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5374:6221..7704- >mRNA_L-elsbetiae_contig5374.13572.1 ID=mRNA_L-elsbetiae_contig5374.13572.1|Name=mRNA_L-elsbetiae_contig5374.13572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig5374:6221..7704- (Laminarionema elsbetiae ELsaHSoW15)back to top |