mRNA_L-elsbetiae_contig5359.13544.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5359.13544.1
Unique NamemRNA_L-elsbetiae_contig5359.13544.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5359.13544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5359contigL-elsbetiae_contig5359:4143..6479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1809
Cds size1071
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5359.13544.1prot_L-elsbetiae_contig5359.13544.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5359 4442..6040 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816557.121416-UTR-L-elsbetiae_contig5359:4142..44411622816557.121416-UTR-L-elsbetiae_contig5359:4142..4441Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5359 4143..4441 +
1691683645.5905037-UTR-L-elsbetiae_contig5359:4142..44411691683645.5905037-UTR-L-elsbetiae_contig5359:4142..4441Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5359 4143..4441 +
1622816557.1621633-UTR-L-elsbetiae_contig5359:6040..64791622816557.1621633-UTR-L-elsbetiae_contig5359:6040..6479Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5359 6041..6479 +
1691683645.6199644-UTR-L-elsbetiae_contig5359:6040..64791691683645.6199644-UTR-L-elsbetiae_contig5359:6040..6479Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5359 6041..6479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816557.1381516-CDS-L-elsbetiae_contig5359:4441..55081622816557.1381516-CDS-L-elsbetiae_contig5359:4441..5508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5359 4442..5508 +
1691683645.6021745-CDS-L-elsbetiae_contig5359:4441..55081691683645.6021745-CDS-L-elsbetiae_contig5359:4441..5508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5359 4442..5508 +
1622816557.1501727-CDS-L-elsbetiae_contig5359:6036..60401622816557.1501727-CDS-L-elsbetiae_contig5359:6036..6040Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5359 6037..6040 +
1691683645.6113296-CDS-L-elsbetiae_contig5359:6036..60401691683645.6113296-CDS-L-elsbetiae_contig5359:6036..6040Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5359 6037..6040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5359.13544.1

>prot_L-elsbetiae_contig5359.13544.1 ID=prot_L-elsbetiae_contig5359.13544.1|Name=mRNA_L-elsbetiae_contig5359.13544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=357bp
MSTERGAASKIAAHGRTSARMEATPDFCARHKKDGMVNVTKERCDRRDCT
KQASYGMDGSCKPHFCPQHKKDGMVPVTHKRCAQQAFTKRPSCGVDGGST
KVEFCSVHKKDGMMDVHKKRCAREGCAKQPSYGADGNKPVFCSAHQKDGM
VDVNNKRCAQQGCTKRALYGVDSGSTKAEFCSAHKNDGMVIVNKRRCAQQ
GCTKQPSFGVDGHKREFCSAHMEDGMVDVHTKRCGRQCCTKRPLYGVDGG
STKAEFCSAHKKDDIITIRGRRSKKASAGDGRGRGVSEGSDSALADDSSA
RLAGTGRKRSDRFSADDSADTGAPSSRGGNKRTRQTPTVVKAEPGPFCIG
RRGNWR*
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mRNA from alignment at L-elsbetiae_contig5359:4143..6479+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5359.13544.1 ID=mRNA_L-elsbetiae_contig5359.13544.1|Name=mRNA_L-elsbetiae_contig5359.13544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2337bp|location=Sequence derived from alignment at L-elsbetiae_contig5359:4143..6479+ (Laminarionema elsbetiae ELsaHSoW15)
CACGCGGCACTCCACGCGGCAACCGCTACTCAGTTGATGTTTTCATTTGC
ACGACTCAAGTGCAAATAACAACGTGCACGACTCGAACGCCTCTTTGCAC
GCCTCGTCGTCCAAATAGATACAGGGCCCTGTATCGGGAGCAGGAGGGGT
TGTGCCTGCTGATCAAAAGGACGGGATGGTAGATGTGAGGAGCAAGAGGT
GTGGCGAACAAGGTTGCACCAAGCGGCCGTCATACGGCGTGGACGGCGGT
AGCACCAAGGCGGAGTTTTGCTCTGCACACAAGAAGGACGGGATGGTGGA
TGTCCACGGAAAGAGGTGCGGCCAGCAAGATTGCAGCACACGGCCGCACT
TCGGCGCGGATGGAAGCAACACCCGATTTCTGCGCAAGGCACAAGAAGGA
CGGGATGGTGAACGTCACCAAGGAGAGGTGCGACCGACGAGATTGCACCA
AGCAGGCGTCATATGGCATGGATGGTAGCTGCAAGCCGCATTTCTGCCCT
CAACACAAGAAGGACGGGATGGTGCCCGTCACCCACAAGAGGTGCGCCCA
ACAAGCTTTTACCAAGCGGCCGTCATGCGGCGTGGACGGTGGTAGCACCA
AGGTGGAGTTTTGTTCTGTACACAAGAAGGACGGGATGATGGATGTCCAC
AAAAAGAGGTGCGCCCGAGAAGGTTGCGCCAAGCAGCCGTCATATGGGGC
GGACGGGAACAAGCCAGTGTTCTGCTCTGCACACCAGAAGGACGGGATGG
TGGACGTAAATAATAAGAGGTGCGCCCAACAAGGTTGTACCAAGAGGGCG
TTATACGGCGTGGACAGCGGTAGCACCAAGGCGGAGTTTTGCTCTGCACA
CAAGAATGACGGGATGGTGATCGTCAACAAGAGGAGGTGCGCCCAGCAAG
GTTGTACCAAGCAGCCGTCATTTGGGGTGGACGGCCACAAGCGGGAGTTC
TGCTCCGCACACATGGAGGACGGGATGGTGGACGTACATACGAAGAGGTG
TGGCCGACAATGTTGTACCAAGCGGCCGTTATACGGCGTGGACGGCGGTA
GCACCAAGGCGGAGTTTTGCTCTGCACACAAGAAGGACGATATAATCACG
ATCAGGGGCCGACGTTCCAAGAAGGCATCTGCTGGTGATGGTAGGGGTAG
GGGCGTGTCGGAAGGTAGTGACTCGGCGCTGGCGGACGATAGCTCGGCGC
GCCTTGCTGGTACCGGCCGAAAGCGTAGCGACAGGTTTTCTGCTGATGAT
TCTGCCGACACGGGGGCACCTTCGAGCAGAGGGGGGAATAAGCGAACCCG
CCAGACTCCCACTGTTGTGAAGGCGGAACCGGGCCCCTTCTGTATCGGGC
GGAGAGGAAACTGGAGGTGAGTTGGAAGAATGTATGCCGCTGCTGCTGGG
CACGTGGGTCTATACTGCTAGGGTTGCGAAGTGCATTCGGCACCCGGGTG
CTTTCGCTGGACACGAAATAATGTTGTGGCCGGTTGTCTGGCGTCTGGAA
TCTAGCCCTATTACTTACAGTACATATCTAGTGCTCCGATATCCAAACGA
ACGAACGTAGAATTTTCGGAATCTTTTTGGCCAGAACAAACACGCCGCGG
TGGACGTTGCCCTTGATGGAAACCGCCCTGAACGAATCATCATTCATAGA
AAGATATTGAGCGACGTTGCCCTTGATGGAAACCGCCCTGAACGAAGAGT
CATCGTTCATTGCACGAAATATTGAGTTTCGCGCAAGACTTGTTCGTCTG
TTGCAAGCAGCATATCTTGTTGGCCTAGAACGTTATTCGCTGCGTTCTTG
TTATTCATGACTACTGCTGCTTGATCAGACCGCAAAGGGTTCTCCATTGT
GGTTTTACACCTCACGCGCTATTTTTCAATATTTGTCTTTCCAGGTAGCC
TGTACCGCGGTGGGGAACTACACCAGAAGGACGGAACCAAGCGATCAAAA
CGTGCGTGTTGTTTTGGAGGGCATTATACAATAGCTGTTTTGGAGGCGAG
GTTTTGCGCGAACGGTGATATTTGAGGCTGGGAAGGCTGCAGGTTTAGTG
AAGTGTCATCTACCCCCCTCGCGCTTGTACCATGTGATTGCGGTCCACTA
CAGCTTTAGCATTGCTTGGTGGCGGGCTGCCTCTACCCGGGTCTGGTACC
AACAGCATCGAGCATATTTTCGTTCACAGAAAGGTCTAATTGTAAAACGG
GAGTAAGAACAGGTTTTTGTTGACAGATTGGGTCTGAGACCCTCGCAAGT
ATTTTCTTGTCCACCATGATTACAAAGGATATCCTAGTACGGCAACCTAG
GTGTTGCGGTGGTGCGCTTGTGGAAAAAAATGCGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5359:4143..6479+

>mRNA_L-elsbetiae_contig5359.13544.1 ID=mRNA_L-elsbetiae_contig5359.13544.1|Name=mRNA_L-elsbetiae_contig5359.13544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2142bp|location=Sequence derived from alignment at L-elsbetiae_contig5359:4143..6479+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCACGGAAAGAGGTGCGGCCAGCAAGATTGCAGCACACGGCCGCAC
TTCGGCGCGGATGGAAGCAACACCCGATTTCTGCGCAAGGCACAAGAAGG
ACGGGATGGTGAACGTCACCAAGGAGAGGTGCGACCGACGAGATTGCACC
AAGCAGGCGTCATATGGCATGGATGGTAGCTGCAAGCCGCATTTCTGCCC
TCAACACAAGAAGGACGGGATGGTGCCCGTCACCCACAAGAGGTGCGCCC
AACAAGCTTTTACCAAGCGGCCGTCATGCGGCGTGGACGGTGGTAGCACC
AAGGTGGAGTTTTGTTCTGTACACAAGAAGGACGGGATGATGGATGTCCA
CAAAAAGAGGTGCGCCCGAGAAGGTTGCGCCAAGCAGCCGTCATATGGGG
CGGACGGGAACAAGCCAGTGTTCTGCTCTGCACACCAGAAGGACGGGATG
GTGGACGTAAATAATAAGAGGTGCGCCCAACAAGGTTGTACCAAGAGGGC
GTTATACGGCGTGGACAGCGGTAGCACCAAGGCGGAGTTTTGCTCTGCAC
ACAAGAATGACGGGATGGTGATCGTCAACAAGAGGAGGTGCGCCCAGCAA
GGTTGTACCAAGCAGCCGTCATTTGGGGTGGACGGCCACAAGCGGGAGTT
CTGCTCCGCACACATGGAGGACGGGATGGTGGACGTACATACGAAGAGGT
GTGGCCGACAATGTTGTACCAAGCGGCCGTTATACGGCGTGGACGGCGGT
AGCACCAAGGCGGAGTTTTGCTCTGCACACAAGAAGGACGATATAATCAC
GATCAGGGGCCGACGTTCCAAGAAGGCATCTGCTGGTGATGGTAGGGGTA
GGGGCGTGTCGGAAGGTAGTGACTCGGCGCTGGCGGACGATAGCTCGGCG
CGCCTTGCTGGTACCGGCCGAAAGCGTAGCGACAGGTTTTCTGCTGATGA
TTCTGCCGACACGGGGGCACCTTCGAGCAGAGGGGGGAATAAGCGAACCC
GCCAGACTCCCACTGTTGTGAAGGCGGAACCGGGCCCCTTCTGTATCGGG
CGGAGAGGAAACTGGAGATGTCCACGGAAAGAGGTGCGGCCAGCAAGATT
GCAGCACACGGCCGCACTTCGGCGCGGATGGAAGCAACACCCGATTTCTG
CGCAAGGCACAAGAAGGACGGGATGGTGAACGTCACCAAGGAGAGGTGCG
ACCGACGAGATTGCACCAAGCAGGCGTCATATGGCATGGATGGTAGCTGC
AAGCCGCATTTCTGCCCTCAACACAAGAAGGACGGGATGGTGCCCGTCAC
CCACAAGAGGTGCGCCCAACAAGCTTTTACCAAGCGGCCGTCATGCGGCG
TGGACGGTGGTAGCACCAAGGTGGAGTTTTGTTCTGTACACAAGAAGGAC
GGGATGATGGATGTCCACAAAAAGAGGTGCGCCCGAGAAGGTTGCGCCAA
GCAGCCGTCATATGGGGCGGACGGGAACAAGCCAGTGTTCTGCTCTGCAC
ACCAGAAGGACGGGATGGTGGACGTAAATAATAAGAGGTGCGCCCAACAA
GGTTGTACCAAGAGGGCGTTATACGGCGTGGACAGCGGTAGCACCAAGGC
GGAGTTTTGCTCTGCACACAAGAATGACGGGATGGTGATCGTCAACAAGA
GGAGGTGCGCCCAGCAAGGTTGTACCAAGCAGCCGTCATTTGGGGTGGAC
GGCCACAAGCGGGAGTTCTGCTCCGCACACATGGAGGACGGGATGGTGGA
CGTACATACGAAGAGGTGTGGCCGACAATGTTGTACCAAGCGGCCGTTAT
ACGGCGTGGACGGCGGTAGCACCAAGGCGGAGTTTTGCTCTGCACACAAG
AAGGACGATATAATCACGATCAGGGGCCGACGTTCCAAGAAGGCATCTGC
TGGTGATGGTAGGGGTAGGGGCGTGTCGGAAGGTAGTGACTCGGCGCTGG
CGGACGATAGCTCGGCGCGCCTTGCTGGTACCGGCCGAAAGCGTAGCGAC
AGGTTTTCTGCTGATGATTCTGCCGACACGGGGGCACCTTCGAGCAGAGG
GGGGAATAAGCGAACCCGCCAGACTCCCACTGTTGTGAAGGCGGAACCGG
GCCCCTTCTGTATCGGGCGGAGAGGAAACTGGAGGTAGGTAG
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