mRNA_L-elsbetiae_contig5358.13543.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5358.13543.1
Unique NamemRNA_L-elsbetiae_contig5358.13543.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5358.13543.1 vs. uniprot
Match: A0A6H5L3U3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3U3_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 1.420e-67
Identity = 113/148 (76.35%), Postives = 128/148 (86.49%), Query Frame = 1 
Query:   10 RCMEYEAEERPSADETRAWLEELLTELPNDACAIPEPLEIPAIPEAEDRNRNDSSETPPASTNVNNSDLNILAQTTSFASSDQTHIHAGRDRGNWAGDSDANAGLPSPPAMGGGDDQSYFSASQLPSATGGEEQFVPSKMGYLHIKNQ 453
            RCMEYEAEERPSADETRAWLEELL+ELPND CAIPEPLE+PAIPE EDR   DS+ETPPAS  +  SD++ L QT +F+ +D+T + AGRDR +WAGD+DAN+GLPSPPAMGGGDDQS+FSASQLPS TG  E FVPSKMGYLHIKNQ
Sbjct:  199 RCMEYEAEERPSADETRAWLEELLSELPNDTCAIPEPLEVPAIPEGEDRI--DSAETPPASAIIGKSDIDGLEQTANFSDADKTRVQAGRDRAHWAGDADANSGLPSPPAMGGGDDQSFFSASQLPSVTGDGEAFVPSKMGYLHIKNQ 344
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BLAST of mRNA_L-elsbetiae_contig5358.13543.1 vs. uniprot
Match: D7G911_ECTSI (LISK family protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G911_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 1.130e-64
Identity = 112/151 (74.17%), Postives = 127/151 (84.11%), Query Frame = 1 
Query:    1 LLGRCMEYEAEERPSADETRAWLEELLTELPNDACAIPEPLEIPAIPEAEDRNRNDSSETPPASTNVNNSDLNILAQTTSFASSDQTHIHAGRDRGNWAGDSDANAGLPSPPAMGGGDDQSYFSASQLPSATGGEEQFVPSKMGYLHIKNQ 453
            L   CMEYEAEERPSADETRAWLEELL+ELPND CAIPEPLE+PAIPE EDR   DS+ETPPAS  +  SD++ L QT +F+ +D+  + AGRDR +WAGD+DAN+GLPSPPAMGGGDDQS+FSASQLPS TG  E FVPSKMGYLHIKNQ
Sbjct:  258 LAAMCMEYEAEERPSADETRAWLEELLSELPNDTCAIPEPLEVPAIPEGEDRI--DSAETPPASAIIGKSDMDGLEQTANFSDADKRRVQAGRDRAHWAGDADANSGLPSPPAMGGGDDQSFFSASQLPSVTGDGEAFVPSKMGYLHIKNQ 406
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BLAST of mRNA_L-elsbetiae_contig5358.13543.1 vs. uniprot
Match: A0A835YUS4_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUS4_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.610e-6
Identity = 50/157 (31.85%), Postives = 69/157 (43.95%), Query Frame = 1 
Query:    1 LLGRCMEYEAEERPSADETRAWLEELLTELPNDACAIPEPLEIPAIPEAEDRNRNDSSETPPASTNVNNSDLNILAQTTSFAS-SDQTHIHAGRDRGNWAGDSDANAGLPSPPAMGGGDDQSYFSASQLPSATGGEEQ-----FVPSKMGYLHIKNQ 453
            L  +C+EYEA  RP+A++ RAWLE+LL E+P+D   +P    +  + EA+                        L Q  + AS S +      R        SD  + +P  P       QS   A  L    G + Q     F+PSKMGYLH+KNQ
Sbjct:  370 LTLQCLEYEANLRPTAEDARAWLEDLLAEIPDDTAPLPSLPVVEGMLEADQEEE-------------------TLEQALAQASLSGRAPRPPERPAATPTDASDYPSEMPPLPP------QSNRGAQGLSPILGHDSQHNSQAFIPSKMGYLHVKNQ 501
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5358.13543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L3U3_9PHAE1.420e-6776.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G911_ECTSI1.130e-6474.17LISK family protein kinase n=1 Tax=Ectocarpus sili... [more]
A0A835YUS4_9STRA3.610e-631.85Kinase-like domain-containing protein n=1 Tax=Trib... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5358contigL-elsbetiae_contig5358:11033..12207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue6.5e-54
Seed eggNOG ortholog2880.D7G911
KEGG koko:K04427,ko:K20717,ko:K20718
KEGG Pathwayko04010,ko04013,ko04016,ko04064,ko04140,ko04152,ko04214,ko04310,ko04380,ko04520,ko04620,ko04621,ko04622,ko04624,ko04657,ko04660,ko04668,ko05140,ko05145,ko05162,ko05168,ko05169,ko05418,map04010,map04013,map04016,map04064,map04140,map04152,map04214,map04310,map04380,map04520,map04620,map04621,map04622,map04624,map04657,map04660,map04668,map05140,map05145,map05162,map05168,map05169,map05418
KEGG ModuleM00686,M00688,M00689
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-15_002340.1
EC2.7.11.1,2.7.11.25
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Exons3
Model size457
Cds size441
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5358.13543.1prot_L-elsbetiae_contig5358.13543.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5358 11033..12192 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816557.050977-CDS-L-elsbetiae_contig5358:11032..112041622816557.050977-CDS-L-elsbetiae_contig5358:11032..11204Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5358 11033..11204 -
1691683645.540355-CDS-L-elsbetiae_contig5358:11032..112041691683645.540355-CDS-L-elsbetiae_contig5358:11032..11204Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5358 11033..11204 -
1622816557.0633621-CDS-L-elsbetiae_contig5358:11465..116771622816557.0633621-CDS-L-elsbetiae_contig5358:11465..11677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5358 11466..11677 -
1691683645.5552018-CDS-L-elsbetiae_contig5358:11465..116771691683645.5552018-CDS-L-elsbetiae_contig5358:11465..11677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5358 11466..11677 -
1622816557.0748515-CDS-L-elsbetiae_contig5358:12135..121921622816557.0748515-CDS-L-elsbetiae_contig5358:12135..12192Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5358 12136..12192 -
1691683645.5674627-CDS-L-elsbetiae_contig5358:12135..121921691683645.5674627-CDS-L-elsbetiae_contig5358:12135..12192Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5358 12136..12192 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816557.0863893-UTR-L-elsbetiae_contig5358:12192..122071622816557.0863893-UTR-L-elsbetiae_contig5358:12192..12207Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5358 12193..12207 -
1691683645.579041-UTR-L-elsbetiae_contig5358:12192..122071691683645.579041-UTR-L-elsbetiae_contig5358:12192..12207Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5358 12193..12207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5358.13543.1

>prot_L-elsbetiae_contig5358.13543.1 ID=prot_L-elsbetiae_contig5358.13543.1|Name=mRNA_L-elsbetiae_contig5358.13543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
MEYEAEERPSADETRAWLEELLTELPNDACAIPEPLEIPAIPEAEDRNRN
DSSETPPASTNVNNSDLNILAQTTSFASSDQTHIHAGRDRGNWAGDSDAN
AGLPSPPAMGGGDDQSYFSASQLPSATGGEEQFVPSKMGYLHIKNQA
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mRNA from alignment at L-elsbetiae_contig5358:11033..12207-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5358.13543.1 ID=mRNA_L-elsbetiae_contig5358.13543.1|Name=mRNA_L-elsbetiae_contig5358.13543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1175bp|location=Sequence derived from alignment at L-elsbetiae_contig5358:11033..12207- (Laminarionema elsbetiae ELsaHSoW15)
CTGCTTGGCAGGTGCATGGAGTACGAGGCCGAAGAACGACCCTCAGCAGA
CGAAACGAGAGCGTGGCTGGAGGTGAGGAGAACTGCCTGTCATCGATTGG
TGGAAATATTGAAAAATTGAAATATTGAGAAGGTCAAGTACCCGTCATTA
AATTGTTAGTTCGAAGTTGTGCAGAAGCTTTTACGATACGCCTGCGCTGC
ACATTCGGGAACGTAATGGCGAGGAATGTGAATCGATATTGTGTTGTTTG
TTACAGCATGCATTGATATTTTTCATGTGTGCAACGTGGCACCTACATCA
AATACGATCATACAGGTATCTAAGTTGAAGCGACCCCCATGTCTTGGTTG
GACTGAGAAGAAGGTTGTGGACATTTTTCGCGTGCTAGTATACCCTCTGC
CACCAAAATACCATACCAGTTCGTACGAAACGCATCATGACGGACATTGA
GCAGAGGCACAGTCCGAACACTTCCGAAATGCGCCGACCGGGACTGTGCA
CACTCTTTTTCGCAAACGGCAAACGATCAGGAGCTGCTTACGGAACTGCC
GAACGACGCCTGCGCAATACCCGAGCCGCTCGAAATCCCTGCTATTCCAG
AGGCTGAAGACCGAAACCGAAACGACAGCTCCGAAACGCCACCCGCGTCT
ACGAATGTCAACAACTCGGATTTGAACATCCTTGCTCAGACTACCAGCTT
TGCCAGCAGCGACCAGACGCATATTCACGCTGGCCGAGACAGGTAGGTTA
GCGAGCGCGCTAAGTGGAAGCACGTTTTTGAGGGTTCCCGGCAAAATGAT
GCATTTTATTTCTCCATCCGCTGTGATTCCATTCCCACGAGACCCTTATC
AGAAAGGTCTTTCAATCAGCGCCTCCATTAACGATTGCATCAAATTTTGA
GCTTCAGGGAATCGCACCCACCACGCTTTGTCTTGGAGCCGCGATATGGT
ATAATGTGCCTCAGTTCGGTTGACACCACTCTCACTAAATACGGCGCCGA
CAGAGGAAACTGGGCTGGAGATTCGGATGCCAACGCTGGTCTTCCTTCAC
CCCCAGCCATGGGTGGTGGAGACGACCAATCTTACTTTTCGGCTTCCCAG
CTGCCTTCTGCGACGGGGGGCGAAGAGCAGTTCGTGCCGTCCAAGATGGG
ATACCTGCATATCAAAAACCAGGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5358:11033..12207-

>mRNA_L-elsbetiae_contig5358.13543.1 ID=mRNA_L-elsbetiae_contig5358.13543.1|Name=mRNA_L-elsbetiae_contig5358.13543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig5358:11033..12207- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGTACGAGGCCGAAGAACGACCCTCAGCAGACGAAACGAGAGCGTG
GCTGGAGATGGAGTACGAGGCCGAAGAACGACCCTCAGCAGACGAAACGA
GAGCGTGGCTGGAGGAGCTGCTTACGGAACTGCCGAACGACGCCTGCGCA
ATACCCGAGCCGCTCGAAATCCCTGCTATTCCAGAGGCTGAAGACCGAAA
CCGAAACGACAGCTCCGAAACGCCACCCGCGTCTACGAATGTCAACAACT
CGGATTTGAACATCCTTGCTCAGACTACCAGCTTTGCCAGCAGCGACCAG
ACGCATATTCACGCTGGCCGAGACAGGAGCTGCTTACGGAACTGCCGAAC
GACGCCTGCGCAATACCCGAGCCGCTCGAAATCCCTGCTATTCCAGAGGC
TGAAGACCGAAACCGAAACGACAGCTCCGAAACGCCACCCGCGTCTACGA
ATGTCAACAACTCGGATTTGAACATCCTTGCTCAGACTACCAGCTTTGCC
AGCAGCGACCAGACGCATATTCACGCTGGCCGAGACAGAGGAAACTGGGC
TGGAGATTCGGATGCCAACGCTGGTCTTCCTTCACCCCCAGCCATGGGTG
GTGGAGACGACCAATCTTACTTTTCGGCTTCCCAGCTGCCTTCTGCGACG
GGGGGCGAAGAGCAGTTCGTGCCGTCCAAGATGGGATACCTGCATATCAA
AAACCAGGCAAGGAAACTGGGCTGGAGATTCGGATGCCAACGCTGGTCTT
CCTTCACCCCCAGCCATGGGTGGTGGAGACGACCAATCTTACTTTTCGGC
TTCCCAGCTGCCTTCTGCGACGGGGGGCGAAGAGCAGTTCGTGCCGTCCA
AGATGGGATACCTGCATATCAAAAACCAGGCA
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