mRNA_L-elsbetiae_contig5350.13531.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5350.13531.1 vs. uniprot
Match: D7FTS7_ECTSI (KH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS7_ECTSI) HSP 1 Score: 405 bits (1042), Expect = 1.360e-126 Identity = 289/491 (58.86%), Postives = 331/491 (67.41%), Query Frame = 1 Query: 1 RTARLHGCEAEFVAAPP---------SANGRGXXXXXXXXXXXXRNSGAVSRAGADKQRQNSQHSASRRQDAGRGGGGVQPAT----------VGAVTAPRNTQS---RRVSIRGPPGLVENARNALVALVLGREESEVSLRARAAAALGEGSWRKIQESSSNVSIISDSSRCSLKVSGPPADVDVCRKELYAMLGAVFRDQFHVVPIPREALHDVANPVDLAAAAXXXX-----APGCG---RSMTAVAETAEVLGPAGAAAAAAGWVGESSVELLADWPCSCVRVRGDAAAVRVAVEAIYAALSRWSALEVTAAVEDWMVPALFGRQGKAIKKLSQSMGGVVLKVSGGVCRGRAASAEAAREATRKLEERVSELRARRAVVRIPPEVASQLKIRGGSSIERLRERARVTIEMENGDGRENAMLEVYISGDPSAVAAAKREVDALTRGVTKGEPAAQPHPEDRNTR--GARTTSAEPSSLPSSTLPSSPG 1377 RT +LHGCEAEFVAAPP ++ GR XXXXXXXXXXXX R G K S RQDAG G GV T + AVT T S RRV IRG PGLV+ AR+ALVALVLGRE+ EV+L AAAALG SWRKIQ+SS V+I D SRCSL+VSGPPA V+ CR+ELY ML FR +F VPIPREALH+VA P+ LA AA XXX +P G R+ A + AEVLGP G AAAA GW GE +V+LLADWPCSCVRVRG+AAAV VAV I ALS+WSAL V A VE+WM P LFG+Q KAIKKLSQSMGGVVL V GVC GRAAS E AR+ATRKLEERVSELRARRAVVR+PPEV ++L RGG SI++++ER R TI + G G EV I GDPSAVAAA+REV+A+ RG +K PAAQ P+DR + G + +PS L LP SPG Sbjct: 266 RTVKLHGCEAEFVAAPPPSPPVSSNTASGGRXXXXXXXXXXXXXXXXXXRHRHGPHK-------SGPGRQDAGGRGAGVGATTTADDTHDDGSLSAVTGVSYTSSAPARRVMIRGLPGLVDKARDALVALVLGREDGEVALGEEAAAALGADSWRKIQDSSERVTITPDRSRCSLRVSGPPAAVEACRRELYTMLADAFRGEFVAVPIPREALHEVATPLRLADAAAXXXXXXXSSPRTGDGKRTAAAAGQIAEVLGPMGVAAAACGWRGEGNVQLLADWPCSCVRVRGEAAAVSVAVGEINTALSKWSALAVAAEVEEWMEPELFGKQRKAIKKLSQSMGGVVLNVVDGVCSGRAASEEEARDATRKLEERVSELRARRAVVRVPPEVVTRLTGRGGCSIDKIKERTRATIRIGEGVGGN----EVIICGDPSAVAAARREVEAMARGPSKSSPAAQA-PKDRQSPDGGVPDAAGDPSPL----LPPSPG 740
BLAST of mRNA_L-elsbetiae_contig5350.13531.1 vs. uniprot
Match: A0A6H5L0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D2_9PHAE) HSP 1 Score: 380 bits (977), Expect = 1.300e-112 Identity = 286/515 (55.53%), Postives = 329/515 (63.88%), Query Frame = 1 Query: 1 RTARLHGCEAEFVAAPPSA-------NGRGXXXXXXXXXXXXRNSGAVSRAGADKQRQNSQHSASRRQDAGRGGGGVQPAT----------VGAVTAPRNTQS---RRVSIRGPPGLVENARNALVALVLGREESEVSLRARAAAALGEGSWRKIQESSSNVSIISDSSRCSLKVSGPPADVDVCRKELYAMLGAVFRDQFHVVPIPREALHDVANPVDLAAAAXXXX-----APGCG---RSMTAVAETAEVLGPAGAAAAAAGWVGESSVELLADWPCSCVRVRGDAAAVRVAVEAIYAALSRWSALEVTAAVEDWMVPALFGRQGKAIKKLSQSMGGVVLKVSGGVCRGRAASAEAAREATRKLEERVSELRARRAVVRIPPEVASQLKIRGGSSIERLRERARVTIEMENGDGRENAMLEVYISGDPSAVAAAKREVDALTRGVTKGEPAAQPHPEDRNTRGARTTSAEPSSLPSSTLPSSPGVS-RNTAVPPPLQP------RQHASNGA 1440 RT +LHGCE EFVAAPP + XXXXXXXXXXXX A++ R S RQDAG G GV T + AVT T S R V IRG PG V+ AR+ALVALVLG E+ EV+L AAALG SWRKIQ+SS V+I D SRCSL+VSGPPA V+ CRKELY ML R +F VPIPREALH+VA + LA AAXXXX +P G R+ A + AEVLGP G A+AA GW GE +V+LLADWPCSCVRVRG+AAAV VAV+ I ALS WSAL VTA VE+WM P L G+Q KAIKKLSQSMGGVVL V GVC GRAAS E AR+ATRKLEERV+ELRARRAVVR+PPEV SQL R G SI++L+ER R TI +E G G + E I GDP+AVAAAK EV+A+ RG +K PA Q P +R ++ A + PS L SPG T P PL P +QHA N A Sbjct: 952 RTVKLHGCEVEFVAAPPPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERHRNGPYKSGPGRQDAGGRGAGVGAITTADDAHDDGSLSAVTGVSYTSSAPARMVMIRGLPGQVDKARDALVALVLGWEDGEVALGEEGAAALGADSWRKIQDSSGRVTITPDKSRCSLRVSGPPAAVEACRKELYTMLADASRGKFVAVPIPREALHEVATSLRLADAAXXXXXXXXSSPKTGDGKRTAAAAGQIAEVLGPTGIASAACGWRGEGNVQLLADWPCSCVRVRGEAAAVSVAVDEINTALSMWSALTVTAEVEEWMEPELLGKQRKAIKKLSQSMGGVVLNVVDGVCCGRAASEEEARDATRKLEERVNELRARRAVVRVPPEVVSQLTGRRGCSIDKLKERTRATICIEEGVGGK----EFIICGDPAAVAAAKLEVEAMARGPSKSGPATQA-PNNRQSQDGSVPDA--AGDPSPLLSPSPGEGVPQTGTPSPLPPSRQNQNQQHAGNTA 1459
BLAST of mRNA_L-elsbetiae_contig5350.13531.1 vs. uniprot
Match: D8LHP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP8_ECTSI) HSP 1 Score: 104 bits (260), Expect = 1.410e-19 Identity = 101/295 (34.24%), Postives = 147/295 (49.83%), Query Frame = 1 Query: 184 DAGRGGGGVQPAT-VGAVTAPRNTQSRRVSIRGPPGLVENARNALVALVLGREESEVSLRARAAAALGEGSWRKIQE--SSSNVSIISDSSRCSLKVSGPPADVDVCRKELYAMLGAVFRDQFHVVPIPREALHDVANPVDLAAAAXXXXAPGCGRSMTAVAETAEVLGPAGAAAAAAGWVGESSVELLADWPCSCVRVRGDAAAVRVAVEAIYAALSRWSALEVTAAVEDWMVPALFGRQGKAIKKLSQSMGGVVL-KVSGGVCRGRAASAEAAREATR--KLEERVSELRARR 1050 + GRGG G + + AV + + + I GP G+V A++A+ +LV G +EV + G W + S+ D R + V G P +V+ RKE L ++F F VP+PR AL D+A+ L AA S V + + P G A VEL ADWP SCVR+RG+ A VR A +A+YAAL+ W+ LEV+ V+ +V L R G+ + +S +MG +L + GV RGRA + + A+EA R KL+ +V+ L RR Sbjct: 277 EGGRGGAGADAISPLQAVGSATPVGHQDILIWGPAGVVGEAKDAVCSLVSGSASAEVVVGVGRIGRRDRGFWVNCETMPGGGGASLEVDHKRGVVVVRGLPEEVEEGRKEFQDKLASLFPGDFLAVPMPRAALKDLADAQGLTRAA----------SQAGVVDGRDER-PDGCDEA-------GGVELWADWPFSCVRLRGEPATVRRAAKALYAALAVWNTLEVSVTVDRAIVTRLLSRSGRILAGISSNMGITLLVEREKGVLRGRARNEDEAKEANRVLKLKLKVAALAQRR 553 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5350.13531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5350.13531.1 >prot_L-elsbetiae_contig5350.13531.1 ID=prot_L-elsbetiae_contig5350.13531.1|Name=mRNA_L-elsbetiae_contig5350.13531.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=628bp RTARLHGCEAEFVAAPPSANGRGGGGGGESGANGGRNSGAVSRAGADKQRback to top mRNA from alignment at L-elsbetiae_contig5350:4643..8885+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5350.13531.1 ID=mRNA_L-elsbetiae_contig5350.13531.1|Name=mRNA_L-elsbetiae_contig5350.13531.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4243bp|location=Sequence derived from alignment at L-elsbetiae_contig5350:4643..8885+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5350:4643..8885+ >mRNA_L-elsbetiae_contig5350.13531.1 ID=mRNA_L-elsbetiae_contig5350.13531.1|Name=mRNA_L-elsbetiae_contig5350.13531.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3768bp|location=Sequence derived from alignment at L-elsbetiae_contig5350:4643..8885+ (Laminarionema elsbetiae ELsaHSoW15)back to top |