mRNA_L-elsbetiae_contig5336.13507.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5336.13507.1
Unique NamemRNA_L-elsbetiae_contig5336.13507.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5336.13507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5336contigL-elsbetiae_contig5336:10924..11162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size227
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816553.5599465-CDS-L-elsbetiae_contig5336:10923..111101622816553.5599465-CDS-L-elsbetiae_contig5336:10923..11110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5336 10924..11110 +
1691683642.997817-CDS-L-elsbetiae_contig5336:10923..111101691683642.997817-CDS-L-elsbetiae_contig5336:10923..11110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5336 10924..11110 +
1622816553.5722468-CDS-L-elsbetiae_contig5336:11122..111601622816553.5722468-CDS-L-elsbetiae_contig5336:11122..11160Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5336 11123..11160 +
1691683643.0094335-CDS-L-elsbetiae_contig5336:11122..111601691683643.0094335-CDS-L-elsbetiae_contig5336:11122..11160Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5336 11123..11160 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5336.13507.1prot_L-elsbetiae_contig5336.13507.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5336 10924..11160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5336.13507.1

>prot_L-elsbetiae_contig5336.13507.1 ID=prot_L-elsbetiae_contig5336.13507.1|Name=mRNA_L-elsbetiae_contig5336.13507.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
ARSVLVHRFSHNIHVGSPGNNIAPRDKVAPRHPFCGRSQCPRSLHRARHQ
AFKRGHGGGHGGERIGRLLPRRRRI
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mRNA from alignment at L-elsbetiae_contig5336:10924..11162+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5336.13507.1 ID=mRNA_L-elsbetiae_contig5336.13507.1|Name=mRNA_L-elsbetiae_contig5336.13507.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=239bp|location=Sequence derived from alignment at L-elsbetiae_contig5336:10924..11162+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCGCAGCGTCCTGGTCCACCGCTTCTCCCACAACATCCATGTCGGCTC
TCCCGGCAACAACATCGCCCCTCGAGACAAGGTCGCGCCCAGACACCCCT
TTTGCGGCCGCAGCCAATGCCCTCGCTCGCTTCACCGGGCCCGGCACCAG
GCCTTCAAACGCGGCCACGGGGGCGGCCACGGGGGCGGCCACGCTCGAGA
GCGAATCGGTAGGCTCCTTCCCCGGCGGCGGAGGATCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5336:10924..11162+

>mRNA_L-elsbetiae_contig5336.13507.1 ID=mRNA_L-elsbetiae_contig5336.13507.1|Name=mRNA_L-elsbetiae_contig5336.13507.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig5336:10924..11162+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCGCAGCGTCCTGGTCCACCGCTTCTCCCACAACATCCATGTCGGCTC
TCCCGGCAACAACATCGCCCCTCGAGACAAGGTCGCGCCCAGACACCCCT
TTTGCGGCCGCAGCCAATGCCCTCGCTCGCTTCACCGGGCCCGGCACCAG
GCCTTCAAACGCGGCCACGGGGGCGGCCACGGGGGCGGCCCGCAGCGTCC
TGGTCCACCGCTTCTCCCACAACATCCATGTCGGCTCTCCCGGCAACAAC
ATCGCCCCTCGAGACAAGGTCGCGCCCAGACACCCCTTTTGCGGCCGCAG
CCAATGCCCTCGCTCGCTTCACCGGGCCCGGCACCAGGCCTTCAAACGCG
GCCACGGGGGCGGCCACGGGGGCGAGCGAATCGGTAGGCTCCTTCCCCGG
CGGCGGAGGATCAGCGAATCGGTAGGCTCCTTCCCCGGCGGCGGAGGATC
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