mRNA_L-elsbetiae_contig5315.13482.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5315.13482.1
Unique NamemRNA_L-elsbetiae_contig5315.13482.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: D7FZ34_ECTSI (Carnitine/acylcarnitine translocase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ34_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 1.090e-129
Identity = 223/297 (75.08%), Postives = 241/297 (81.14%), Query Frame = 1
Query:    1 QPLDSVLVRVQAGSASGTSSKSSSSLSTAVEGLASSGG-MRAFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQQSASPSLWHVFAGGCAGGFAQSFIMSPVELVKVRLQLADGVALNTAATXXXXXXXXXXXXXXXXXXXXLATGVVRSVGLSGLLSRGLGATMGRDVLPHGVWFATYEWCKQEFSLREGVKPSDNGALSVGAQLASGGVAATIAWLVGYPFDVIKTRVQGARVADAKLPSGVLATARQMAAVDGAGVFYKGFGLKLGRAVPMSMIGFFAYEVAAKQFRAML 888
            QPLDSVLVRVQAG+A+G     SSSL  A+  L SSGG  R+ W+GA PM+ SVPAQNALLFAGYGAGLGWCS G  Q  A  SLWHVFAGGCAGGFAQSF+MSPVELVKVRLQL D V L+ AA XXXXXXXXX           LATGVVR+ GLSGLLS GLGATMGRDVLPHGVWFA+YEWCKQEFS REGVK  DNGALSV AQLASGG+AAT AWLVGYPFDVIKTR+Q A +   K+P GV+ATA+ MA+VDG GVFY+GFGLKL RAVPMSMIGFFAYEVAAKQ R ML
Sbjct:   23 QPLDSVLVRVQAGTAAG-----SSSLPAAIRDLLSSGGGARSLWKGAAPMMWSVPAQNALLFAGYGAGLGWCSGGRRQDGAPSSLWHVFAGGCAGGFAQSFVMSPVELVKVRLQLEDRVVLSAAAXXXXXXXXXXFA---------LATGVVRTFGLSGLLSTGLGATMGRDVLPHGVWFASYEWCKQEFSAREGVKACDNGALSVAAQLASGGIAATTAWLVGYPFDVIKTRIQAAGMG--KVPGGVVATAQHMASVDGMGVFYRGFGLKLARAVPMSMIGFFAYEVAAKQLRDML 303          
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: A0A836CMX5_9STRA (Carnitine/acylcarnitine translocase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMX5_9STRA)

HSP 1 Score: 194 bits (493), Expect = 3.410e-54
Identity = 153/313 (48.88%), Postives = 184/313 (58.79%), Query Frame = 1
Query:    1 QPLDSVLVRVQAGSASGTSSKSSSSLSTAVEGLASSGGMRAFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQ-QSASPSLWHVFAGGCAGGFAQSFIMSPVELVKVRLQLADGVALNTAATXXXXXXXXXXXXXXXXXXXXLATGV--------------VRSVGLSGLL--SRGLGATMGRDVLPHGVWFATYEWCKQEFSLREGVKPSDNGALSVGAQLASGGVAATIAWLVGYPFDVIKTRVQGARVADAKLPSGVLA-TARQMAAVDGAGVFYKGFGLKLGRAVPMSMIGFFAYEVAAKQFRAM 885
            QPLD +LVR QA +A    + + S         +S+GG++A W+G   M+ +VPAQNALLFAGYGAGL W    +G   S    LWHVF GGCAGG AQSF+ SPVEL+KVRL             XXXXXXXXXXXXXXXXXXXX                    RS  L  +    +GL AT+ RDVLPHGVWFA+YE  K+  +       +  G L   AQ+A+G  AAT AW VGYP DV+KTR+Q      A   SG  A T  +M A +G  VF++G GLKL RA+PMS IGFFAYE  A   RA+
Sbjct:   26 QPLDCILVRRQANAAPARQALAHS--------FSSAGGLKALWKGTSIMMGTVPAQNALLFAGYGAGLHWSGADKGDGTSEGGQLWHVFVGGCAGGLAQSFLASPVELLKVRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSFALPSVAWAGQGLSATLWRDVLPHGVWFASYEAAKRALA-----GDAAAGPLDPAAQVAAGATAATAAWCVGYPADVVKTRMQ------AHGASGSFAETVARMHAAEGVRVFWRGLGLKLARAIPMSAIGFFAYEEVAAYLRAL 319          
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: A0A7S0I9L0_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0I9L0_MICPS)

HSP 1 Score: 192 bits (487), Expect = 1.600e-53
Identity = 131/304 (43.09%), Postives = 164/304 (53.95%), Query Frame = 1
Query:    1 QPLDSVLVRVQAGSASGTSSKSSSSLSTAVEGLASSGGMRAFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQQSASP----SLWHVFAGGCAGGFAQSFIMSPVELVKVRLQLADGVALNTAATXXXXXXXXXXXXXXXXXXXXLATGVVRSVGLSGLLSRGLGATMGRDVLPHGVWFATYEWCKQEF---SLREGVKPSDNGALS-VGAQLASGGVAATIAWLVGYPFDVIKTRVQG--AR-VADAKLPSGVLATARQMAAVDGAGV---FYKGFGLKLGRAVPMSMIGFFAYEVAAK 870
            QPLD+ L R+QA   +  +     S S A+  + + GG RA WRGA PM   +PAQNALLFAGYG G  W SRG     AS     SL  VF GG  GG  QSF++SP ELVK+R Q A G A    +T                        +  ++G +GL +RGLGAT+ RD +PHG WFA YEW K+        +G+  + +G L+     L +G  AA +AW VGYP D++KTRVQ   AR  A A L  G+  T   M    G  V   FY+GF LKL RAVP S + FFAYE A +
Sbjct:   24 QPLDTTLTRMQA---TRLAPGVDGSASAALRVVLAEGGARALWRGAAPMTAVIPAQNALLFAGYGVGERWASRGGSSSDASSKTSSSLLPVFCGGVVGGVLQSFVVSPFELVKIRQQSAGGTATLAVST------------------------LAGTLGRAGLATRGLGATLLRDGVPHGAWFAAYEWSKRRMIRDDENDGLSATTSGGLTDAWVPLCAGAFAAAVAWGVGYPADLVKTRVQAHAARSAAAATLAPGLAETCAAMLRESGGDVLRAFYRGFDLKLLRAVPASAVSFFAYEEARR 300          
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: A0A8J5XL04_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XL04_DIALT)

HSP 1 Score: 179 bits (453), Expect = 1.690e-48
Identity = 127/312 (40.71%), Postives = 161/312 (51.60%), Query Frame = 1
Query:    1 QPLDSVLVRVQAGSASGTSSKSSSSLSTAVEGLASSGGMRAFWRGAGPMLCSVPAQNALLFAGYGAG-----------------LGWCSRGEGQQSASPSLWHVFAGGCAGGFAQSFIMSPVELVKVRLQLAD----GVALNTAATXXXXXXXXXXXXXXXXXXXXLATGVVRSVGLSGLLSRGLGATMGRDVLPHGVWFATYEWCKQEFSLREGVKPSDNGALSVGAQLASGGVAATIAWLVGYPFDVIKTRVQGARVADAKLPSGVLATARQMAAVDGA---GVFYKGFGLKLGRAVPMSMIGFFAYEVA 864
            QPLD+VL R+Q       +  ++   S A++ L   GG+RA WRGA P+   VP QNALLFAGYG G                               P L  +F GGCAGG  Q F++SPVELVKV LQ +     G  L   A+                        V  ++G+  +  RGL AT+ RD LPHGVWFA+YEW K+E + R+     D    +  A L+ G  AAT+AW VGYP D++KTR+Q    A    PS VLA AR++ A  G      FY+GFGLKL RAVPM+ + FFAYE A
Sbjct:   26 QPLDTVLTRLQ------QAPPAARPASLALQ-LRRDGGLRALWRGASPLAWVVPVQNALLFAGYGMGERFXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPLAPIFVGGCAGGVLQCFVVSPVELVKVHLQSSSPKEAGAGLLAGASK-----------------------VYATIGVPAIW-RGLSATLLRDGLPHGVWFASYEWGKRELAARD----PDRVLPTAAAPLSCGAFAATVAWAVGYPADIVKTRIQSPAHAGRDAPS-VLAAARELLAESGGRPFAAFYRGFGLKLARAVPMNALSFFAYERA 301          
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: B7GCN7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GCN7_PHATC)

HSP 1 Score: 175 bits (444), Expect = 2.000e-47
Identity = 126/299 (42.14%), Postives = 159/299 (53.18%), Query Frame = 1
Query:    1 QPLDSVLVRVQAGSASGTSSKSSSSLS------TAVEGLASSGGMRAFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQQSASPSLWHVFAGGCAGGFAQSFIMSPVELVKVRLQLADGVALNTAATXXXXXXXXXXXXXXXXXXXXLATGVVRSVGLSGLLSRGLGATMGRDVLPHGVWFATYEWCKQEFSLREGVKPSDNGALSVGAQLASGGVAATIAWLVGYPFDVIKTRVQGARVADAKLPSGVLATARQMAAVDGAGV--FYKGFGLKLGRAVPMSMIGFFAYEVAAKQ 873
            QP+D+VL R+QAG+ S   + ++ +        TA   L  S G +A WRGA PM+ +VP QNALL  GYG G  + +   G   ++  L  +F GGC GG  QSF+MSPVEL+KV  Q+  G  L  A                         G V +        RGL AT+ RD +PHGVWFATYE  K    L E +     G  SV   LASG +AAT AW VGYP D+IKTR+Q A   +     G++ TAR +     AGV   Y+GFGLKL R++P SMIGF  YE   KQ
Sbjct:   25 QPVDTVLTRLQAGTVSSLVTGTTRAXXXXXXXRTATLDLTQSAGFQALWRGASPMITAVPLQNALLMGGYGVGQAYSA---GNLDSADRLAAIFVGGCTGGILQSFLMSPVELIKVSQQVR-GTPLRDAG------------------------GAVLTHWAQPAAWRGLYATLLRDGIPHGVWFATYEVAKD--GLEETL-----GKDSVSVPLASGALAATAAWAVGYPADLIKTRIQAAGPTE---NHGIVETARAIMNEGNAGVAGLYRGFGLKLVRSIPASMIGFTVYEFVKKQ 285          
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: A0A6U8KEQ0_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6U8KEQ0_EMIHU)

HSP 1 Score: 175 bits (443), Expect = 4.690e-47
Identity = 118/261 (45.21%), Postives = 144/261 (55.17%), Query Frame = 1
Query:  121 AFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQQSASPSLWHVFAGGCAGGFAQSFIMSPVELVKVRLQLADGVALNTAATXXXXXXXXXXXXXXXXXXXXLATGVVRSVGLSG-------LLSRGLGATMGRDVLPHGVWFATYEWCKQEFSLREGVKPSDNGA--------LSVGAQLASGGVAATIAWLVGYPFDVIKTRVQGARVADAKLPSGVLATARQMAAVDGAGVFYKGFGLKLGRAVPMSMIGFFAYE 858
            A WRG GP+L   P  NAL+F GYG+G  +   G+       SL  VF GGC GGFAQSF+ SPVEL+KVRLQLA+                    XXXXXXX   A  +V+ +  +G       LLS+GL AT+ RDV+PHGVWFA+YE  K   +    +  S            LS G QLA+G  AA  AW VGYPFD++KTR Q +  ++     G LA  RQ+    G    Y GFGLK+ RAVPMS IGF  YE
Sbjct:   59 AAWRGVGPLLLGTPFNNALIFVGYGSGKRFSETGD---ETPNSLLPVFIGGCVGGFAQSFLASPVELIKVRLQLAE-----------------PGGXXXXXXXLAAAGALVKELAAAGHSHTLPPLLSQGLAATIARDVVPHGVWFASYEVAKTALAPPRPIAASAEAPDPQAPDPPLSTGRQLAAGASAAVAAWAVGYPFDIVKTRCQASSSSE-----GFLAATRQLWREGGVAAMYSGFGLKMCRAVPMSAIGFLVYE 294          
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: A0A448ZGK2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGK2_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.200e-46
Identity = 126/317 (39.75%), Postives = 166/317 (52.37%), Query Frame = 1
Query:    1 QPLDSVLVRVQAG---SASGTS-----SKSSSSLSTAVEGLASSGGMRAFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQQS-ASPSLWHVFAGGCAGGFAQSFIMSPVELVKVRLQL-ADGVALNTAATXXXXXXXXXXXXXXXXXXXXLATGVVRSVGLSGLLSRGLGATMGRDVLPHGVWFATYEWCKQEF------SLREGVKPSDNGA---------LSVGAQLASGGVAATIAWLVGYPFDVIKTRVQGARVADAKLPSGVLATARQMAAVDGAGVF---YKGFGLKLGRAVPMSMIGFFAYEVAA 867
            QPLD+VL R QAG   SA G         ++S++ ++V GL    G+R+ WRG+ PM+ +VP QNALL  GYG G  +     G  + A  +L  VF GGCAGG  QSF+MSPVE +KV+ Q  A   A  TA++                                 L +RGL AT+ RD +PHGVWFATYE+CK         +   G +    GA          +V   + SG VAAT AW VGYPFD+IKTR+Q A     ++P GV  T  ++       +    Y+GFGLKL R+VP SM+GFF YE+ +
Sbjct:   27 QPLDTVLTRFQAGRVLSAPGLEVAVQGGVTASAVRSSVRGLVGEFGLRSLWRGSSPMIGAVPVQNALLMGGYGFGKRYSEGARGADTGACDALLPVFVGGCAGGVLQSFLMSPVEWIKVQQQTHASSGAAATASSVSVLRRFLTHRHA--------------------LWNRGLTATLLRDGIPHGVWFATYEFCKLRMLAGPAEAASGGTETPGAGAEDGPRSSLYKTVAVPVVSGAVAATTAWAVGYPFDIIKTRIQ-ASADGVRVPPGVWETGIKLVEEANGNLLRGLYRGFGLKLLRSVPASMVGFFTYELVS 322          
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: C1E524_MICCC (Mitochondrial carrier family n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E524_MICCC)

HSP 1 Score: 172 bits (435), Expect = 7.340e-46
Identity = 123/312 (39.42%), Postives = 155/312 (49.68%), Query Frame = 1
Query:    1 QPLDSVLVRVQAGSASGTSSKSSSSLSTAVEGLASSGGMRAFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQQSASP------SLWHVFAGGCAGGFAQSFIMSPVELVKVRLQLADGVALNTAATXXXXXXXXXXXXXXXXXXXXLATGVVRSVGLSGLLSRGLGATMGRDVLPHGVWFATYEWCKQEF--SLREGVKPSDNGALSVGAQ--LASGGVAATIAWLVGYPFDVIKTRVQ---------GARVADAKLPSGVLATARQMAAVDGAGV---FYKGFGLKLGRAVPMSMIGFFAYEVAAK 870
            QP+D+ L R+QA   +  +     S   A+  + + GG RA WRGA PM   +PAQNALLFAGYG G  W SR +     +P      SL  VF GG  GG  QSF++SP ELVK+R Q A G      +T                        +  ++G  GL +RGLGAT+ RD +PHGVWFA YEW K+    + R+             A   L +G  AA +AW VGYP D++KTRVQ         G        P G+  T   M    G  V   FY+GF LKL RAVP S + FFAYE A +
Sbjct:   24 QPVDTTLTRMQA---TRLAPGVDGSARAALRVVLAEGGARALWRGAAPMTAVIPAQNALLFAGYGVGERWASRRDKDSGGNPDGSSRESLLPVFCGGVVGGVLQSFVVSPFELVKIRQQAAGGAVTLAVST------------------------LAGNLGRVGLCTRGLGATLLRDGVPHGVWFAAYEWSKRRMVQASRDXXXXXXXXXRRTDAAVPLCAGAFAAAVAWGVGYPADLVKTRVQAQAAXXXXXGGATMMRSAP-GLAETCAAMLRESGGDVLRAFYRGFDLKLLRAVPASAVSFFAYEEARR 307          
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: A0A0M0K9X8_9EUKA (Solute carrier family 25 member 45 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K9X8_9EUKA)

HSP 1 Score: 170 bits (431), Expect = 1.550e-45
Identity = 125/301 (41.53%), Postives = 156/301 (51.83%), Query Frame = 1
Query:    1 QPLDSVLVRVQAGSASGTSSKSSSSLSTAVEGLASSGGMRAFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQQSASPSLWHVFAGGCAGGFAQSFIMSPVELVKVRLQLADGVALNTAATXXXXXXXXXXXXXXXXXXXXLATGVVRSVGLSGLLSRGLGATMGRDVLPHGVWFATYEWCKQEFSLREGVKPSDNGALSVG---------AQLASGGVAATIAWLVGYPFDVIKTRVQ----GARVADAKLPSGVLATARQMAAVDGAGVFYKGFGLKLGRAVPMSMIGFFAYEVA 864
            QP+D +L ++Q+G+ +  +   +              G+ + WRG+  M  +VP  NA+L  GYGAG     +  G      S+  VF GGC GGF QSF+ SPVEL+KVRLQLA G  + T +T                     A  V     L  LL +GL AT+ RDV+PHGVWFA YE+ K+ F  R     S+   L VG         AQL+SG  AA  AW+VGYP DVIKTR Q     A VA+A         AR + A  G   FY G GLKL RAVPMS +GFFAYE A
Sbjct:   20 QPIDFLLTKLQSGATAQVNKPPN--------------GLLSMWRGSALMFATVPLNNAMLMYGYGAG-----KRVGDAYGGESILPVFIGGCTGGFMQSFLQSPVELLKVRLQLAMGKEVPTVSTLTRELLRPSPRG---------AAAVAPP--LPPLLHKGLYATLLRDVVPHGVWFAAYEYSKKHFERRA----SEAAGLPVGGTPPPLSTVAQLSSGAFAAIAAWVVGYPADVIKTRCQMEGGQASVAEA---------ARAIYAEGGLRAFYNGLGLKLLRAVPMSAVGFFAYEYA 277          
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Match: A0A7S3P6R2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6R2_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.940e-45
Identity = 124/304 (40.79%), Postives = 160/304 (52.63%), Query Frame = 1
Query:    1 QPLDSVLVRVQAGSAS---------GTSSKSSSSLSTAVEGLASSGGMRAFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQQSASPSLWHVFAGGCAGGFAQSFIMSPVELVKVRLQLADGVALNTAATXXXXXXXXXXXXXXXXXXXXLATGVVRSVGLSGLLSRGLGATMGRDVLPHGVWFATYEWCKQ--EFSLREGVKPSDNGALSVGAQLASGGVAATIAWLVGYPFDVIKTRVQGARVADAKLPS----GVLATARQMAAVDGAGVF---YKGFGLKLGRAVPMSMIGFFAYE 858
            QP+D+VL R QAG  +               S  ++T +  L  + G++A WRGA PML +VPAQNALL  GYG G  +      +   +     VF GGC GG  QSF+MSPVELVKV  Q A G A  T  T                        + +S+  S  L RGLGAT+ RD +PHGVWF  YE  K   +++L    +P+D+    V   L +G  AAT AW VGYP DVIKTR+Q A  A +  PS    G++AT + +       V+   Y+GFGLKL R++P SMIGF  YE
Sbjct:   25 QPVDTVLTRWQAGLIATXXXXXXXXXXXXXXSHVVATTMRHLTQTAGLKALWRGASPMLTAVPAQNALLMGGYGVGQAYSVAHAPEYRRTA----VFVGGCTGGVLQSFLMSPVELVKVAQQCAAGEASATTTTLTTTRQI-----------------LTQSLQSSTFLWRGLGATLLRDGIPHGVWFVAYEEGKTGLQYALH---RPADD---PVVVPLLAGAGAATAAWAVGYPADVIKTRIQAAAAASSTAPSSASLGIIATGKVLIEEANGNVWRGLYRGFGLKLVRSIPASMIGFGVYE 301          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5315.13482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ34_ECTSI1.090e-12975.08Carnitine/acylcarnitine translocase n=2 Tax=Ectoca... [more]
A0A836CMX5_9STRA3.410e-5448.88Carnitine/acylcarnitine translocase n=1 Tax=Tribon... [more]
A0A7S0I9L0_MICPS1.600e-5343.09Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A8J5XL04_DIALT1.690e-4840.71Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
B7GCN7_PHATC2.000e-4742.14Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A6U8KEQ0_EMIHU4.690e-4745.21Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A448ZGK2_9STRA1.200e-4639.75Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
C1E524_MICCC7.340e-4639.42Mitochondrial carrier family n=1 Tax=Micromonas co... [more]
A0A0M0K9X8_9EUKA1.550e-4541.53Solute carrier family 25 member 45 n=1 Tax=Chrysoc... [more]
A0A7S3P6R2_9STRA1.940e-4540.79Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5315contigL-elsbetiae_contig5315:1858..4002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score367.1
Seed ortholog evalue7.1e-99
Seed eggNOG ortholog2880.D7FZ34
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the mitochondrial carrier (TC 2.A.29) family
EggNOG OGsKOG0762@1,KOG0762@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Ec32 ortholog descriptioncarnitine/acylcarnitine translocase
Ec32 orthologEc-17_004320.1
Exons3
Model size1514
Cds size801
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5315.13482.1prot_L-elsbetiae_contig5315.13482.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5315 1972..3403 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816551.4201877-UTR-L-elsbetiae_contig5315:1857..19711622816551.4201877-UTR-L-elsbetiae_contig5315:1857..1971Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5315 1858..1971 +
1691683641.4935207-UTR-L-elsbetiae_contig5315:1857..19711691683641.4935207-UTR-L-elsbetiae_contig5315:1857..1971Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5315 1858..1971 +
1622816551.4705358-UTR-L-elsbetiae_contig5315:3403..40021622816551.4705358-UTR-L-elsbetiae_contig5315:3403..4002Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5315 3404..4002 +
1691683641.535124-UTR-L-elsbetiae_contig5315:3403..40021691683641.535124-UTR-L-elsbetiae_contig5315:3403..4002Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5315 3404..4002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816551.4304385-CDS-L-elsbetiae_contig5315:1971..21511622816551.4304385-CDS-L-elsbetiae_contig5315:1971..2151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5315 1972..2151 +
1691683641.508291-CDS-L-elsbetiae_contig5315:1971..21511691683641.508291-CDS-L-elsbetiae_contig5315:1971..2151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5315 1972..2151 +
1622816551.4399264-CDS-L-elsbetiae_contig5315:2455..28281622816551.4399264-CDS-L-elsbetiae_contig5315:2455..2828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5315 2456..2828 +
1691683641.5180616-CDS-L-elsbetiae_contig5315:2455..28281691683641.5180616-CDS-L-elsbetiae_contig5315:2455..2828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5315 2456..2828 +
1622816551.453817-CDS-L-elsbetiae_contig5315:3155..34031622816551.453817-CDS-L-elsbetiae_contig5315:3155..3403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5315 3156..3403 +
1691683641.5262613-CDS-L-elsbetiae_contig5315:3155..34031691683641.5262613-CDS-L-elsbetiae_contig5315:3155..3403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5315 3156..3403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5315.13482.1

>prot_L-elsbetiae_contig5315.13482.1 ID=prot_L-elsbetiae_contig5315.13482.1|Name=mRNA_L-elsbetiae_contig5315.13482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=267bp
MRAFWRGAGPMLCSVPAQNALLFAGYGAGLGWCSRGEGQQSASPSLWHVF
AGGCAGGFAQSFIMSPVELVKVRLQLADGVALNTAATATATAAAGGSGGG
AGAGAFALATGVVRSVGLSGLLSRGLGATMGRDVLPHGVWFATYEWCKQE
FSLREGVKPSDNGALSVGAQLASGGVAATIAWLVGYPFDVIKTRVQGARV
ADAKLPSGVLATARQMAAVDGAGVFYKGFGLKLGRAVPMSMIGFFAYEVA
AKQFRAMLTPPASGGV*
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mRNA from alignment at L-elsbetiae_contig5315:1858..4002+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5315.13482.1 ID=mRNA_L-elsbetiae_contig5315.13482.1|Name=mRNA_L-elsbetiae_contig5315.13482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2145bp|location=Sequence derived from alignment at L-elsbetiae_contig5315:1858..4002+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCCTTTGGATAGCGTTTTAGTCCGAGTCCAGGCTGGGTCGGCGAGTGG GACCAGCAGCAAGAGCAGCAGCTCACTCTCCACCGCTGTCGAAGGGTTGG CGTCGTCGGGCGGGATGCGTGCGTTCTGGAGGGGAGCCGGGCCAATGCTG TGCAGCGTACCCGCACAAAACGCCCTCCTGTTCGCAGGCTATGGCGCTGG CTTGGGGTGGTGCTCCAGGGGGGAGGGGCAGCAGAGCGCTTCCCCGTCTC TGTGGCACGTGTTTGCCGGGGGCTGTGCGGGGGGGTTCGCACAGGTAAGC GACGCATGACACATATATATATTGTACGTTTGTGGCATGATACGCTTTTG CACAGAGCGTGCTGTGTCGTGTTGTTTCGCGATCCAGGGTTTCCTCTCCG AAAATCAAGATCAAAAAGCGCCTTTATTATGTAAGCAAAAGCGTGCCATG TGAAGGTGTGCCTATAGAGCACGAAGGCCAAGGTTAAATACACGGCGGAC AGCCTTGCTCGGTTCTAGACTTGCGCCGTCACCTTCCGTCCTCTTTCGTC CCCCTTGCCGTACCTACCTTACTTCTCGTCGTCGACCCGAGTGCACAGAG CTTCATCATGAGCCCCGTCGAGCTCGTGAAGGTAAGGCTTCAGCTAGCGG ACGGTGTCGCCCTCAACACAGCAGCCACAGCTACCGCCACCGCCGCCGCC GGTGGGAGCGGAGGGGGGGCTGGAGCTGGGGCTTTCGCCCTGGCGACGGG GGTCGTGCGCTCGGTCGGACTGTCGGGCCTCCTGTCGAGGGGCTTGGGCG CAACGATGGGGAGAGACGTGCTTCCGCACGGGGTATGGTTTGCGACGTAC GAGTGGTGCAAGCAGGAGTTCTCTCTGAGAGAAGGCGTCAAGCCCTCCGA CAACGGGGCTCTAAGCGTGGGGGCGCAGCTAGCGTCGGGGGGTGTCGCGG CGACAATCGCGTGGCTCGTGGGTGAGTCAAGTCAAAGGCCATCGGTCGCT ATGAACTCGAGGCACCCATTCACGGTTTTCAGGCCGCAAGGCACAAAGCA TCGTGGGTTGTTTGTTGTTTGTTGTGTCTTGTGGTGCACGCTGCCAGTCA AGCTGTAAGGCAACGCGCGAGAGACGATCGGAGACAGTAGTTTATCTGAC AGTAGTACATCCGCATATATATATATGTGTGTGTGCATGCCATCGAAGCG GTGTTTTTTACCGCCACATCATCCCTATTAGTTGAGACCCCCTACAATAA CATGCCCCCACGTTTTCTCCCCACGCACTCGGGGGACCCCCCTTCCAGGG TATCCGTTTGACGTCATCAAGACGCGAGTGCAGGGCGCACGGGTAGCGGA CGCCAAACTTCCTTCTGGTGTGCTGGCAACGGCGCGGCAAATGGCCGCGG TGGACGGAGCGGGCGTCTTCTACAAAGGCTTCGGCCTCAAGCTCGGTCGG GCCGTGCCGATGTCCATGATCGGGTTTTTCGCGTACGAGGTCGCTGCCAA GCAGTTCAGGGCCATGCTCACCCCTCCGGCATCGGGTGGGGTGTAAGGCG GTAAAAACTGCGCGATTGATGACTTTGCGGTGTGGTCGGCGTTTGTAAGG GGTTTTCTTATCTTTAGGGGGGTTGGGTCCTTGGGAACAAGGGAAGCGAG CTGGTTCTTCTTGGAACCCGAGCGGGACGCAGTCCCTTGCCTAGCCTGCA TATGTAGCAGTAAATAGAGTAGCGTGGGAGTAGTTGATAGTTGATATATT CCCCCAGGTTTATGTAGTCTCTTGTATGGTGCACGCGGGGTATTCTGATA AATATGTGTGTTTTGCAGTCATTGTACTTGGTGTGCGATATGGCGATCGC AAAACGTCCTCACGGTAGTTTTCTGCGGTCAGGTCAGGTTTGCGGCGGTA CGACAGGAAGCGGGGAAAGGTGGCGCGACTGGTGCGGTGCGGGAACGTTA TTTGTCCACGTTGTAGACTACTGAATAACGAAGCGCGTTTGCCGCAGAAA ATAAACGGAAGCGTCGACTTCGAAGCGCTCCCTCCCGCTCCATGGGTTGT CCATTGAATTGGGAGGCGTTCCGGGTGTATTGTGCGTTGATTGTGTTGCG GAAACAACAAACAATTTGGGCCTTCAAGGCGCTCGAGGCCAGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5315:1858..4002+

>mRNA_L-elsbetiae_contig5315.13482.1 ID=mRNA_L-elsbetiae_contig5315.13482.1|Name=mRNA_L-elsbetiae_contig5315.13482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1602bp|location=Sequence derived from alignment at L-elsbetiae_contig5315:1858..4002+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTGCGTTCTGGAGGGGAGCCGGGCCAATGCTGTGCAGCGTACCCGC
ACAAAACGCCCTCCTGTTCGCAGGCTATGGCGCTGGCTTGGGGTGGTGCT
CCAGGGGGGAGGGGCAGCAGAGCGCTTCCCCGTCTCTGTGGCACGTGTTT
GCCGGGGGCTGTGCGGGGGGGTTCGCACAGATGCGTGCGTTCTGGAGGGG
AGCCGGGCCAATGCTGTGCAGCGTACCCGCACAAAACGCCCTCCTGTTCG
CAGGCTATGGCGCTGGCTTGGGGTGGTGCTCCAGGGGGGAGGGGCAGCAG
AGCGCTTCCCCGTCTCTGTGGCACGTGTTTGCCGGGGGCTGTGCGGGGGG
GTTCGCACAGAGCTTCATCATGAGCCCCGTCGAGCTCGTGAAGGTAAGGC
TTCAGCTAGCGGACGGTGTCGCCCTCAACACAGCAGCCACAGCTACCGCC
ACCGCCGCCGCCGGTGGGAGCGGAGGGGGGGCTGGAGCTGGGGCTTTCGC
CCTGGCGACGGGGGTCGTGCGCTCGGTCGGACTGTCGGGCCTCCTGTCGA
GGGGCTTGGGCGCAACGATGGGGAGAGACGTGCTTCCGCACGGGGTATGG
TTTGCGACGTACGAGTGGTGCAAGCAGGAGTTCTCTCTGAGAGAAGGCGT
CAAGCCCTCCGACAACGGGGCTCTAAGCGTGGGGGCGCAGCTAGCGTCGG
GGGGTGTCGCGGCGACAATCGCGTGGCTCGTGGAGCTTCATCATGAGCCC
CGTCGAGCTCGTGAAGGTAAGGCTTCAGCTAGCGGACGGTGTCGCCCTCA
ACACAGCAGCCACAGCTACCGCCACCGCCGCCGCCGGTGGGAGCGGAGGG
GGGGCTGGAGCTGGGGCTTTCGCCCTGGCGACGGGGGTCGTGCGCTCGGT
CGGACTGTCGGGCCTCCTGTCGAGGGGCTTGGGCGCAACGATGGGGAGAG
ACGTGCTTCCGCACGGGGTATGGTTTGCGACGTACGAGTGGTGCAAGCAG
GAGTTCTCTCTGAGAGAAGGCGTCAAGCCCTCCGACAACGGGGCTCTAAG
CGTGGGGGCGCAGCTAGCGTCGGGGGGTGTCGCGGCGACAATCGCGTGGC
TCGTGGGGTATCCGTTTGACGTCATCAAGACGCGAGTGCAGGGCGCACGG
GTAGCGGACGCCAAACTTCCTTCTGGTGTGCTGGCAACGGCGCGGCAAAT
GGCCGCGGTGGACGGAGCGGGCGTCTTCTACAAAGGCTTCGGCCTCAAGC
TCGGTCGGGCCGTGCCGATGTCCATGATCGGGTTTTTCGCGTACGAGGTC
GCTGCCAAGCAGTTCAGGGCCATGCTCACCCCTCCGGCATCGGGTGGGGT
GTAAGGTATCCGTTTGACGTCATCAAGACGCGAGTGCAGGGCGCACGGGT
AGCGGACGCCAAACTTCCTTCTGGTGTGCTGGCAACGGCGCGGCAAATGG
CCGCGGTGGACGGAGCGGGCGTCTTCTACAAAGGCTTCGGCCTCAAGCTC
GGTCGGGCCGTGCCGATGTCCATGATCGGGTTTTTCGCGTACGAGGTCGC
TGCCAAGCAGTTCAGGGCCATGCTCACCCCTCCGGCATCGGGTGGGGTGT
AA
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