mRNA_L-elsbetiae_contig5298.13446.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5298.13446.1
Unique NamemRNA_L-elsbetiae_contig5298.13446.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5298.13446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5298contigL-elsbetiae_contig5298:4457..5991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size569
Cds size567
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816547.4803157-CDS-L-elsbetiae_contig5298:4456..45571622816547.4803157-CDS-L-elsbetiae_contig5298:4456..4557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5298 4457..4557 +
1691683638.5060587-CDS-L-elsbetiae_contig5298:4456..45571691683638.5060587-CDS-L-elsbetiae_contig5298:4456..4557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5298 4457..4557 +
1622816547.490447-CDS-L-elsbetiae_contig5298:5525..59911622816547.490447-CDS-L-elsbetiae_contig5298:5525..5991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5298 5526..5991 +
1691683638.517261-CDS-L-elsbetiae_contig5298:5525..59911691683638.517261-CDS-L-elsbetiae_contig5298:5525..5991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5298 5526..5991 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5298.13446.1prot_L-elsbetiae_contig5298.13446.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5298 4457..5991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5298.13446.1

>prot_L-elsbetiae_contig5298.13446.1 ID=prot_L-elsbetiae_contig5298.13446.1|Name=mRNA_L-elsbetiae_contig5298.13446.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=189bp
PIGAGARAVVAQSAMKVRAKRAESERKLRRETTREADDETARQAAELTRA
EEKLAATISERDGFKDLAERAARRADDADATTARLRRERSEERSSRRELE
GRVGGLEAAAAADAGRREELEGRLCAAQEEIARLEGDKQQAAALWAGSAA
AAAAAVSGNNSVQSSSPITGGGGGGSEEGGGGFFGGGQD
back to top

mRNA from alignment at L-elsbetiae_contig5298:4457..5991+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5298.13446.1 ID=mRNA_L-elsbetiae_contig5298.13446.1|Name=mRNA_L-elsbetiae_contig5298.13446.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1535bp|location=Sequence derived from alignment at L-elsbetiae_contig5298:4457..5991+ (Laminarionema elsbetiae ELsaHSoW15)
CCAATTGGGGCGGGTGCTCGCGCGGTGGTGGCTCAGAGCGCGATGAAAGT
GCGGGCGAAGCGAGCGGAGAGTGAGAGGAAGCTGCGGCGGGAAACCACAC
GGTGCGGTAACTCACGATGCATACATCATGCATGCCTCATGGACGCCTAC
ATATGTGTTGTCTTCACATCAAATATACTCCTATAATAGTTTTTTATAAA
AAAAAATTATAAACTTTTTTTCCACCACGTCGAGAAAAGTCGTAGTAATT
TTTCAATCTAATTTTGGCAGGATGTCCTCGTGACAGGGAGCTCATCGAGC
ACTGGAAATAAATGTGAAGCAGAGAAGAATTACGTATGTAAGTATGTAGG
TATGTCCGAAGTACCCCCATTTCCCGGGCCATTTGTTTTTTGCACACGAC
CAGAGTGTGGAGTGTGGGCCTCCTCCTCCCGCCCAAGAACAAGTGCCACG
GATGGTCCCGCATTCCGTCCGCATTCCGTCCGCGTTTGATCGCCATCGCC
ATCTCATCATGCAGTGTCGCCACCCTTTTTGGTGGAAAGTCCTTTGTTGC
TGTACGCCAAAGCACGATGCCTTCGGCGTGATCGGGTGTGTAGTCTGTAC
GTACGCTCCAGAGCGATGCTCACTTCTTGCTTGCAAAGTGACGCAATATG
CTGCGAGTACATTGGACCAGGTTGATTGCTTGGTAGCTGTAGTACATGTA
GACAAGAATTAGGGCACTTGTGTTGAGTGCGGATGGATTTCTGCCCTAGA
TAAATGCAGGTTCCTTTACTCATCCGTGCGTGGAGTATGCATGCATGCCT
TGCCTACATTATATTTTCCATCGCCTTCCGCATTCCAATCGGCGCACCAC
GACCTATGTGTGTTTCGATGGACCTCAGCGGGTTTCGTTTTCATCCTCTA
AATACCGACGCCTCTCTCTCTCTCCCTCTCCCTCTCTCTCTGTGTGTGTT
TCTCTGTGCGTGTATGTCTTTCACCCTGAGAGTGCGGCTATATTCCTGAC
CAAGCTCCCGCCACCACCGTGTACGTATGTGCATGCATAACGTTCTTTTC
CCCATCGATTTGTCTCCAGGGAGGCCGACGACGAAACCGCTCGACAGGCG
GCCGAGCTAACCCGCGCGGAAGAAAAGCTGGCCGCCACGATATCCGAGCG
GGATGGTTTCAAGGACCTCGCCGAGAGAGCGGCACGGCGCGCGGACGACG
CGGATGCCACGACCGCCCGGCTCCGCAGGGAGCGCTCCGAGGAGCGGTCG
TCCCGGCGGGAGCTGGAGGGCAGGGTTGGAGGTCTCGAAGCGGCGGCGGC
GGCGGACGCCGGGCGCCGGGAGGAGCTCGAGGGGAGGCTTTGCGCGGCCC
AGGAGGAGATAGCGCGGCTTGAGGGTGACAAGCAGCAGGCGGCGGCGCTG
TGGGCGGGTTCTGCGGCCGCGGCGGCTGCGGCTGTTTCCGGGAACAACAG
CGTTCAATCCTCCTCCCCGATCACGGGTGGCGGCGGCGGCGGTTCCGAGG
AGGGAGGCGGGGGCTTCTTCGGTGGCGGGCAGGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5298:4457..5991+

>mRNA_L-elsbetiae_contig5298.13446.1 ID=mRNA_L-elsbetiae_contig5298.13446.1|Name=mRNA_L-elsbetiae_contig5298.13446.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1134bp|location=Sequence derived from alignment at L-elsbetiae_contig5298:4457..5991+ (Laminarionema elsbetiae ELsaHSoW15)
CCAATTGGGGCGGGTGCTCGCGCGGTGGTGGCTCAGAGCGCGATGAAAGT
GCGGGCGAAGCGAGCGGAGAGTGAGAGGAAGCTGCGGCGGGAAACCACAC
GCCAATTGGGGCGGGTGCTCGCGCGGTGGTGGCTCAGAGCGCGATGAAAG
TGCGGGCGAAGCGAGCGGAGAGTGAGAGGAAGCTGCGGCGGGAAACCACA
CGGGAGGCCGACGACGAAACCGCTCGACAGGCGGCCGAGCTAACCCGCGC
GGAAGAAAAGCTGGCCGCCACGATATCCGAGCGGGATGGTTTCAAGGACC
TCGCCGAGAGAGCGGCACGGCGCGCGGACGACGCGGATGCCACGACCGCC
CGGCTCCGCAGGGAGCGCTCCGAGGAGCGGTCGTCCCGGCGGGAGCTGGA
GGGCAGGGTTGGAGGTCTCGAAGCGGCGGCGGCGGCGGACGCCGGGCGCC
GGGAGGAGCTCGAGGGGAGGCTTTGCGCGGCCCAGGAGGAGATAGCGCGG
CTTGAGGGTGACAAGCAGCAGGCGGCGGCGCTGTGGGCGGGTTCTGCGGC
CGCGGCGGCTGCGGCTGTTTCCGGGAACAACAGCGTTCAATCCTCCTCCC
CGATCACGGGTGGCGGCGGCGGCGGTTCCGAGGAGGGAGGCGGGGGCTTC
TTCGGTGGCGGGCAGGACGGAGGCCGACGACGAAACCGCTCGACAGGCGG
CCGAGCTAACCCGCGCGGAAGAAAAGCTGGCCGCCACGATATCCGAGCGG
GATGGTTTCAAGGACCTCGCCGAGAGAGCGGCACGGCGCGCGGACGACGC
GGATGCCACGACCGCCCGGCTCCGCAGGGAGCGCTCCGAGGAGCGGTCGT
CCCGGCGGGAGCTGGAGGGCAGGGTTGGAGGTCTCGAAGCGGCGGCGGCG
GCGGACGCCGGGCGCCGGGAGGAGCTCGAGGGGAGGCTTTGCGCGGCCCA
GGAGGAGATAGCGCGGCTTGAGGGTGACAAGCAGCAGGCGGCGGCGCTGT
GGGCGGGTTCTGCGGCCGCGGCGGCTGCGGCTGTTTCCGGGAACAACAGC
GTTCAATCCTCCTCCCCGATCACGGGTGGCGGCGGCGGCGGTTCCGAGGA
GGGAGGCGGGGGCTTCTTCGGTGGCGGGCAGGAC
back to top