mRNA_L-elsbetiae_contig5288.13425.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5288.13425.1
Unique NamemRNA_L-elsbetiae_contig5288.13425.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5288.13425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5288contigL-elsbetiae_contig5288:2955..3919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size965
Cds size648
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816546.1832628-CDS-L-elsbetiae_contig5288:2954..36021622816546.1832628-CDS-L-elsbetiae_contig5288:2954..3602Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5288 2955..3602 +
1691683637.679373-CDS-L-elsbetiae_contig5288:2954..36021691683637.679373-CDS-L-elsbetiae_contig5288:2954..3602Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5288 2955..3602 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816546.1938946-UTR-L-elsbetiae_contig5288:3602..39191622816546.1938946-UTR-L-elsbetiae_contig5288:3602..3919Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5288 3603..3919 +
1691683637.688615-UTR-L-elsbetiae_contig5288:3602..39191691683637.688615-UTR-L-elsbetiae_contig5288:3602..3919Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5288 3603..3919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5288.13425.1prot_L-elsbetiae_contig5288.13425.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5288 2955..3602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5288.13425.1

>prot_L-elsbetiae_contig5288.13425.1 ID=prot_L-elsbetiae_contig5288.13425.1|Name=mRNA_L-elsbetiae_contig5288.13425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=216bp
DRLPRAASVLLYSRRLPRVAVVCLFLSFARLPRAASVLLSSRRLPRVAVV
CLFRFLYTPARRRCLVSLFLRRLPRVAVVCFFRFLWTPARRWCLVSLFLR
RLRRVAVVCSCFFGRLPHIAGICFGFISQTPVRCRCLSVFCFSGILSALP
LPLVYFSGRLRLASDLLSFRVVFALCTNWYFLCVFDVAYTCLAVAFSHLY
LGAPHVSFLSQIDCF*
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mRNA from alignment at L-elsbetiae_contig5288:2955..3919+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5288.13425.1 ID=mRNA_L-elsbetiae_contig5288.13425.1|Name=mRNA_L-elsbetiae_contig5288.13425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=965bp|location=Sequence derived from alignment at L-elsbetiae_contig5288:2955..3919+ (Laminarionema elsbetiae ELsaHSoW15)
GATCGACTCCCGCGTGCCGCCAGTGTCTTGTTGTATTCTCGCAGACTTCC
ACGTGTTGCCGTTGTCTGTTTGTTTCTATCTTTTGCTCGACTCCCGCGTG
CCGCCAGTGTCTTGCTGTCTTCTCGCAGACTTCCACGTGTTGCCGTCGTC
TGTTTGTTTCGCTTTTTGTATACCCCCGCGCGACGCCGGTGTCTCGTTTC
GTTATTTCTTCGCAGACTTCCGCGTGTTGCCGTCGTCTGTTTCTTTCGCT
TTTTGTGGACTCCCGCGCGACGCTGGTGTCTCGTTTCGTTGTTTCTTCGC
AGACTTCGGCGTGTTGCCGTCGTCTGTTCCTGCTTTTTTGGTCGACTCCC
GCACATAGCCGGCATCTGCTTCGGTTTTATCTCGCAGACTCCTGTGCGTT
GCCGTTGTCTATCTGTTTTCTGTTTTTCTGGCATCCTTTCCGCGTTGCCG
CTGCCTTTGGTTTATTTCTCTGGTCGGCTCCGTCTTGCAAGTGATTTGCT
TTCGTTTCGCGTTGTTTTCGCTCTTTGCACGAATTGGTACTTCCTATGCG
TCTTCGATGTAGCGTATACATGCCTGGCCGTCGCCTTTTCGCACCTTTAT
CTTGGAGCTCCGCACGTTTCCTTCCTTTCGCAAATCGACTGTTTCTGATG
ACTTGTGATGTGAATTTAGTGAGTCTCTCTGGTTGCCTTTCTTCCGCTGC
TGTCTTCGGCCACCTTTGAAGACTTGCGACAAGAATCCCGCAAGTTTCTC
CTGTTGCCTTTATTCAGTTGCCGTATATATTTTTTCCACTCTTGCAACAA
GAATCCCGCAAGTTTCCCCGATCGTCTTTTGAGTCCGCAACTGGTTTTGA
CCATTTCTCCTGGCTTTCTGCCCTGCTTCAAGCCGCTTAACGCCTTATCT
TCGGCCCACCGTTTGGTGTAATCTAAGGTTGTTTTCTTTCTTTTACCTTC
GCTATTCCATAGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5288:2955..3919+

>mRNA_L-elsbetiae_contig5288.13425.1 ID=mRNA_L-elsbetiae_contig5288.13425.1|Name=mRNA_L-elsbetiae_contig5288.13425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1296bp|location=Sequence derived from alignment at L-elsbetiae_contig5288:2955..3919+ (Laminarionema elsbetiae ELsaHSoW15)
GATCGACTCCCGCGTGCCGCCAGTGTCTTGTTGTATTCTCGCAGACTTCC
ACGTGTTGCCGTTGTCTGTTTGTTTCTATCTTTTGCTCGACTCCCGCGTG
CCGCCAGTGTCTTGCTGTCTTCTCGCAGACTTCCACGTGTTGCCGTCGTC
TGTTTGTTTCGCTTTTTGTATACCCCCGCGCGACGCCGGTGTCTCGTTTC
GTTATTTCTTCGCAGACTTCCGCGTGTTGCCGTCGTCTGTTTCTTTCGCT
TTTTGTGGACTCCCGCGCGACGCTGGTGTCTCGTTTCGTTGTTTCTTCGC
AGACTTCGGCGTGTTGCCGTCGTCTGTTCCTGCTTTTTTGGTCGACTCCC
GCACATAGCCGGCATCTGCTTCGGTTTTATCTCGCAGACTCCTGTGCGTT
GCCGTTGTCTATCTGTTTTCTGTTTTTCTGGCATCCTTTCCGCGTTGCCG
CTGCCTTTGGTTTATTTCTCTGGTCGGCTCCGTCTTGCAAGTGATTTGCT
TTCGTTTCGCGTTGTTTTCGCTCTTTGCACGAATTGGTACTTCCTATGCG
TCTTCGATGTAGCGTATACATGCCTGGCCGTCGCCTTTTCGCACCTTTAT
CTTGGAGCTCCGCACGTTTCCTTCCTTTCGCAAATCGACTGTTTCTGAGA
TCGACTCCCGCGTGCCGCCAGTGTCTTGTTGTATTCTCGCAGACTTCCAC
GTGTTGCCGTTGTCTGTTTGTTTCTATCTTTTGCTCGACTCCCGCGTGCC
GCCAGTGTCTTGCTGTCTTCTCGCAGACTTCCACGTGTTGCCGTCGTCTG
TTTGTTTCGCTTTTTGTATACCCCCGCGCGACGCCGGTGTCTCGTTTCGT
TATTTCTTCGCAGACTTCCGCGTGTTGCCGTCGTCTGTTTCTTTCGCTTT
TTGTGGACTCCCGCGCGACGCTGGTGTCTCGTTTCGTTGTTTCTTCGCAG
ACTTCGGCGTGTTGCCGTCGTCTGTTCCTGCTTTTTTGGTCGACTCCCGC
ACATAGCCGGCATCTGCTTCGGTTTTATCTCGCAGACTCCTGTGCGTTGC
CGTTGTCTATCTGTTTTCTGTTTTTCTGGCATCCTTTCCGCGTTGCCGCT
GCCTTTGGTTTATTTCTCTGGTCGGCTCCGTCTTGCAAGTGATTTGCTTT
CGTTTCGCGTTGTTTTCGCTCTTTGCACGAATTGGTACTTCCTATGCGTC
TTCGATGTAGCGTATACATGCCTGGCCGTCGCCTTTTCGCACCTTTATCT
TGGAGCTCCGCACGTTTCCTTCCTTTCGCAAATCGACTGTTTCTGA
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