mRNA_L-elsbetiae_contig528.13418.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: D7G284_ECTSI (50S ribosomal protein L20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G284_ECTSI) HSP 1 Score: 205 bits (522), Expect = 1.680e-63 Identity = 105/115 (91.30%), Postives = 111/115 (96.52%), Query Frame = 1 Query: 184 MATGNHRHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSSQA 528 MA NHRHKKI+KLAKGYRGRSKSVFKIAIQ+VEKALQQAYRDRKNKKR+FRRLWIERINAGVRQHGM YSVFV+KA+KADVELNRKVLAEMAVTEPYSFRAVVETVKAKGS +A Sbjct: 1 MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKNKKREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPKA 115
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: A0A3B9VH17_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9VH17_9PROT) HSP 1 Score: 146 bits (368), Expect = 2.620e-40 Identity = 70/107 (65.42%), Postives = 89/107 (83.18%), Query Frame = 1 Query: 190 TGNHRHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKA 510 T RH KIIK+AKGYRGR+KS F++A++KVEKALQ AYRDR+NKKRDFRRLWI RINA RQHG+SYSVF++ K A++E++RKVLA +A+T+ +F A+VE KA Sbjct: 9 TSRRRHNKIIKMAKGYRGRNKSCFRVAVEKVEKALQYAYRDRRNKKRDFRRLWITRINAATRQHGLSYSVFINALKAANIEIDRKVLAHVAMTDAKAFSAIVEKAKA 115
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: W7TQD2_9STRA (50s ribosomal protein l20 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQD2_9STRA) HSP 1 Score: 145 bits (367), Expect = 1.300e-39 Identity = 74/115 (64.35%), Postives = 99/115 (86.09%), Query Frame = 1 Query: 169 QQCRSMATGNHRHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKAK 513 Q RS+A NHRHKKI+K+AKGYRGR+ + F+IA+Q+VEKALQ AYRDRK KKR+FR LWI+RI A V+Q+GM+YS F+ ++A++ LNRKVLA++AV+EPYSF+AVVETV+++ Sbjct: 46 QPSRSLA--NHRHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRSQ 157
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: A0A2A5BDS7_9RICK (50S ribosomal protein L20 n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2A5BDS7_9RICK) HSP 1 Score: 144 bits (363), Expect = 1.470e-39 Identity = 72/103 (69.90%), Postives = 87/103 (84.47%), Query Frame = 1 Query: 199 HRHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVETVK 507 +RHKKIIK+AKGYRGR+K+ FKIAI+KVEKALQ AYRDR+N+KRDFR LWI+RINA VRQH M YS F+ KKA +E++RK+LAEMAV +P SF +VE VK Sbjct: 12 NRHKKIIKMAKGYRGRAKNCFKIAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVRQHDMIYSTFMGGMKKAGIEVDRKMLAEMAVNDPASFTHIVEQVK 114
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: A0A2S6SQA5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha6_Bin1 TaxID=2013088 RepID=A0A2S6SQA5_9PROT) HSP 1 Score: 142 bits (359), Expect = 6.550e-39 Identity = 64/102 (62.75%), Postives = 90/102 (88.24%), Query Frame = 1 Query: 202 RHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVETVK 507 RHKKI+K+AKGYRGRSK+VF++AIQ+VEKALQ AYRDR+ KKR+FR LWI+RINAG R+HGMSYS F+ KKA++E++RK+L+++A+ P +F+++VE ++ Sbjct: 13 RHKKILKMAKGYRGRSKNVFRVAIQRVEKALQYAYRDRRTKKRNFRALWIQRINAGTREHGMSYSQFIHGIKKAEIEIDRKILSDIALNNPVTFKSIVEKIR 114
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: A0A2S6SBV7_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha6_Bin2 TaxID=2013089 RepID=A0A2S6SBV7_9PROT) HSP 1 Score: 141 bits (356), Expect = 1.840e-38 Identity = 64/104 (61.54%), Postives = 89/104 (85.58%), Query Frame = 1 Query: 202 RHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKAK 513 +HKKI+K+AKGYRGRSK+VF+IA+QKVEK LQ AYRDR+ KKR+FR LWI++INAG R+HGMSYS F+ KKA++E++RK+LA++A+ P +F+ +VE V+ + Sbjct: 13 KHKKILKMAKGYRGRSKNVFRIAVQKVEKGLQYAYRDRRTKKRNFRALWIQKINAGTREHGMSYSQFIKGMKKAEIEIDRKILADIALNNPITFKFIVEKVRGR 116
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: A0A7X2KDB2_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2KDB2_9PROT) HSP 1 Score: 140 bits (352), Expect = 6.830e-38 Identity = 69/107 (64.49%), Postives = 89/107 (83.18%), Query Frame = 1 Query: 190 TGNHRHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKA 510 T + RHKK++KLAKGYRGR+ + F+IA++KVEK LQ AYRDR+ KKR FR+LWI RINAGVRQHGM+YS F++ K A +EL+RKVLA+MA EP SF+A+V+T +A Sbjct: 9 TSHARHKKVLKLAKGYRGRNSTNFRIALEKVEKGLQYAYRDRRAKKRTFRQLWITRINAGVRQHGMTYSQFMNGMKLAGIELDRKVLADMAALEPESFKALVDTARA 115
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: A0A4Q7DJH6_9PROT (50S ribosomal protein L20 n=1 Tax=Candidatus Finniella inopinata TaxID=1696036 RepID=A0A4Q7DJH6_9PROT) HSP 1 Score: 140 bits (352), Expect = 7.260e-38 Identity = 70/113 (61.95%), Postives = 92/113 (81.42%), Query Frame = 1 Query: 190 TGNHRHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSSQA 528 T + RHKKIIK+AKGYRGRSK+ F+IA+Q+VEKALQ AYRDR+NKKRDFR LWI+RINA VR+ G++YSVF++ KA + ++RK +AE+AV EP SF+ +VE VK ++ A Sbjct: 9 TTHARHKKIIKMAKGYRGRSKNCFRIAVQRVEKALQYAYRDRRNKKRDFRGLWIQRINAAVRELGLTYSVFMNGLIKAGITIDRKAMAELAVNEPASFKVLVEQVKTSMAAAA 121
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: UPI00041B8A37 (50S ribosomal protein L20 n=1 Tax=Azospirillum halopraeferens TaxID=34010 RepID=UPI00041B8A37) HSP 1 Score: 140 bits (352), Expect = 7.480e-38 Identity = 69/113 (61.06%), Postives = 94/113 (83.19%), Query Frame = 1 Query: 190 TGNHRHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSSQA 528 T + RH+KI+KLAKGYRGR+ + F+IAI+KVEKAL+ AYRDR+NKKRDFR LWI+RINAGVRQHG++YS F++ K A +E++RKVLA++A EP SF+A+V+ + S++A Sbjct: 9 TTHARHRKILKLAKGYRGRNSTCFRIAIEKVEKALRYAYRDRRNKKRDFRGLWIQRINAGVRQHGLTYSRFINGIKLAGIEMDRKVLADLAAREPDSFKALVDRARDALSAKA 121
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Match: A0A1M3GWJ7_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium 41-28 TaxID=1895706 RepID=A0A1M3GWJ7_9PROT) HSP 1 Score: 139 bits (351), Expect = 9.630e-38 Identity = 65/103 (63.11%), Postives = 90/103 (87.38%), Query Frame = 1 Query: 190 TGNHRHKKIIKLAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSVFVSKAKKADVELNRKVLAEMAVTEPYSFRAVVE 498 T + RHKK++KLAKGYRGRSK+ F+IAIQ+VEKALQ AYRDR+N+KRDFR LWI+RINAG R+HG++YS F++ KA ++++RKVLA++AV EP +F+++V+ Sbjct: 9 TTHARHKKVLKLAKGYRGRSKNCFRIAIQRVEKALQYAYRDRRNRKRDFRGLWIQRINAGTREHGLTYSKFINGLTKAGIDIDRKVLADLAVHEPAAFKSIVD 111 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig528.13418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig528.13418.1 >prot_L-elsbetiae_contig528.13418.1 ID=prot_L-elsbetiae_contig528.13418.1|Name=mRNA_L-elsbetiae_contig528.13418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp MSWSSVLGKIRPQLLWSSLARPGCSSSAGRGLGAAIGGKSGSRQGPWDVLback to top mRNA from alignment at L-elsbetiae_contig528:27594..30345+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig528.13418.1 ID=mRNA_L-elsbetiae_contig528.13418.1|Name=mRNA_L-elsbetiae_contig528.13418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2752bp|location=Sequence derived from alignment at L-elsbetiae_contig528:27594..30345+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig528:27594..30345+ >mRNA_L-elsbetiae_contig528.13418.1 ID=mRNA_L-elsbetiae_contig528.13418.1|Name=mRNA_L-elsbetiae_contig528.13418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig528:27594..30345+ (Laminarionema elsbetiae ELsaHSoW15)back to top |