mRNA_L-elsbetiae_contig5256.13379.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: D7G2W6_ECTSI (Putative growth-on protein GRO10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2W6_ECTSI) HSP 1 Score: 120 bits (302), Expect = 1.690e-29 Identity = 68/110 (61.82%), Postives = 73/110 (66.36%), Query Frame = 1 Query: 1 ESLPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFLLTNCTVPSDLYLAFSPWFVCVFCVRVGYFIFMVAGYAVGLLMANMAVYVMAMGQ 330 ESLPMLLELPR+WDYTGGYAMLGLGDIVIPGLLLSFAHRYD S + +H GYF+FMVAGYAVGLLMANMAVYVM+MGQ Sbjct: 508 ESLPMLLELPRLWDYTGGYAMLGLGDIVIPGLLLSFAHRYDLS---VGLHWGK-----------------------------GYFVFMVAGYAVGLLMANMAVYVMSMGQ 585
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: A0A7S2H102_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H102_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 2.640e-20 Identity = 56/109 (51.38%), Postives = 65/109 (59.63%), Query Frame = 1 Query: 4 SLPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFLLTNCTVPSDLYLAFSPWFVCVFCVRVGYFIFMVAGYAVGLLMANMAVYVMAMGQ 330 LPMLLELPR++DYTGGY MLGLGDIV+PGLL+SFA RYD S R A PW +I MV GY++GL+MAN+AVYVM MGQ Sbjct: 493 ELPMLLELPRIFDYTGGYTMLGLGDIVLPGLLVSFAIRYDVSKR-----------------------ARVPW----------NYILMVIGYSIGLMMANVAVYVMNMGQ 568
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: A0A7S2KC43_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KC43_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 5.910e-19 Identity = 57/112 (50.89%), Postives = 70/112 (62.50%), Query Frame = 1 Query: 1 ESLPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFLLTNCT--VPSDLYLAFSPWFVCVFCVRVGYFIFMVAGYAVGLLMANMAVYVMAMGQ 330 E LPML +PRV DY GG +MLGLGDIV+PGLLLSFA R+D + R + + + N V S+ S W +C C + GYF +V YAVGL MAN AVY+M MGQ Sbjct: 496 EPLPMLFAIPRVGDYQGGASMLGLGDIVLPGLLLSFASRFDEAKRLMGLVSGGAGRVRNGAGGVSSNK----SSWNICCGCGQGGYFGPVVVAYAVGLAMANAAVYLMQMGQ 603
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: A0A7S2BZ12_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BZ12_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 9.430e-19 Identity = 54/109 (49.54%), Postives = 62/109 (56.88%), Query Frame = 1 Query: 4 SLPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFLLTNCTVPSDLYLAFSPWFVCVFCVRVGYFIFMVAGYAVGLLMANMAVYVMAMGQ 330 LPMLL LPR+ DYTGGY MLGLGDIV+PGLL++FA RYD S A PW F+ MV GY+VGL+MAN+AVYVM MGQ Sbjct: 114 ELPMLLLLPRIDDYTGGYTMLGLGDIVLPGLLVAFAARYDVSIG-----------------------ARIPW----------NFLIMVGGYSVGLMMANVAVYVMEMGQ 189
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: B8CBC3_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBC3_THAPS) HSP 1 Score: 89.0 bits (219), Expect = 2.870e-18 Identity = 54/111 (48.65%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 1 ESLPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFLLTNCTVP-SDLYLAFSPWFVCVFCVRVGYFIFMVAGYAVGLLMANMAVYVMAMGQ 330 + LPML +PR+ DY GG +MLGLGDIV+PGLLLSFA RYD + R I + + N P + SP C R GYF ++ YA+GL MAN AVY+M MGQ Sbjct: 681 DPLPMLFAIPRIGDYQGGCSMLGLGDIVLPGLLLSFASRYDEAKRLIGVIGGGSGRMRNNACPDATQQQKLSPLCFLCCCCRQGYFGPVMVAYAIGLAMANAAVYIMQMGQ 791
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: B7FP84_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FP84_PHATC) HSP 1 Score: 85.1 bits (209), Expect = 5.850e-17 Identity = 55/108 (50.93%), Postives = 68/108 (62.96%), Query Frame = 1 Query: 7 LPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFLLTNCTVPSDLYLAFSPWFVCVFCVRVGYFIFMVAGYAVGLLMANMAVYVMAMGQ 330 LPMLL +PR++D+ GG ++LGLGDIV+PGLLLSFA R+D + R + + LT+ Y C C GYF MVA YAVGLLMANMAV +M MGQ Sbjct: 310 LPMLLTIPRLFDFEGGSSLLGLGDIVLPGLLLSFAARFDAAKRMMGVMGGGSGSLTSYHCQERRYCCS-----CGLCSG-GYFPPMVAAYAVGLLMANMAVQIMHMGQ 411
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: W7TAM5_9STRA (Signal peptide peptidase-aspartyl protease family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAM5_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 6.330e-17 Identity = 56/111 (50.45%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 1 ESLPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFLLTNCTVPSDLYLAFSPWFVCVFCVRVG-YFIFMVAGYAVGLLMANMAVYVMAMGQ 330 + LPMLL LPR+ DY GG+ MLGLGDI++PGLL++FA RYD R + + L AF C R G YF MV GYA+GLLMAN+AVYVM MGQ Sbjct: 531 DMLPMLLVLPRINDYAGGFTMLGLGDIILPGLLVAFAARYD---RAMGVEL----------------FAFHK------CGREGRYFRLMVIGYALGLLMANVAVYVMKMGQ 616
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: A0A7S4MHZ3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MHZ3_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 8.780e-17 Identity = 59/114 (51.75%), Postives = 70/114 (61.40%), Query Frame = 1 Query: 1 ESLPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFL--LTNC-TVPSDLYLAFSPWFVCVFCV-RVGYFIFMVAGYAVGLLMANMAVYVMAMGQ 330 + LPMLL +PRV DY GG ++LGLGDIV+PGLLLSFA R+D S R I + + C T P L + C C+ GYF +V YAVGLLMAN AVYVM MGQ Sbjct: 661 DPLPMLLTVPRVNDYAGGSSLLGLGDIVLPGLLLSFAARFDESKRLIGLIGGGNGVNRSNTCQTSPQSKSLFGGLFLGCCACLCNGGYFPPVVVSYAVGLLMANTAVYVMQMGQ 774
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: A0A1E7F6H4_9STRA (Peptidase_A22B-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F6H4_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 3.010e-16 Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 1 Query: 1 ESLPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFLLTNCTVPSDLYLAFSPWFVCVFCVRVGYFIFMVAGYAVGLLMANMAVYVMAMGQ 330 + +PML +PR++DY GG +MLGLGDIV+PGLLLSFA R D + R ++ + + + T+P + S W+ +F YF+ ++ YA+GL MAN AVY+M MGQ Sbjct: 570 DPMPMLFSIPRLFDYQGGASMLGLGDIVLPGLLLSFAARLDAA-RLVYTLYSKKYGQVD-TIPPPM----SAWYALLFGGYGYYFVPLMISYAIGLFMANAAVYIMNMGQ 673
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: A0A7S4RX33_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RX33_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 4.090e-16 Identity = 54/114 (47.37%), Postives = 69/114 (60.53%), Query Frame = 1 Query: 1 ESLPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFLLTNC---TVPSDLYLAFSP-WFVCVFCVRVGYFIFMVAGYAVGLLMANMAVYVMAMGQ 330 + LPMLL +PR+ DY G ++LGLGDIV+PGLLLSFA R+D + + + TN T P D SP +C GYF+ +V YA+GLL AN+AVYVM MGQ Sbjct: 530 DPLPMLLTVPRIADYQQGASLLGLGDIVLPGLLLSFAARFDEAKKLVGFMRTGSATPTNRSPHTCPPD-----SPAGRICGLLCNGGYFVPLVIAYAIGLLCANIAVYVMNMGQ 638 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5256.13379.1 >prot_L-elsbetiae_contig5256.13379.1 ID=prot_L-elsbetiae_contig5256.13379.1|Name=mRNA_L-elsbetiae_contig5256.13379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp MLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCback to top mRNA from alignment at L-elsbetiae_contig5256:11472..12219- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5256.13379.1 ID=mRNA_L-elsbetiae_contig5256.13379.1|Name=mRNA_L-elsbetiae_contig5256.13379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=748bp|location=Sequence derived from alignment at L-elsbetiae_contig5256:11472..12219- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5256:11472..12219- >mRNA_L-elsbetiae_contig5256.13379.1 ID=mRNA_L-elsbetiae_contig5256.13379.1|Name=mRNA_L-elsbetiae_contig5256.13379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig5256:11472..12219- (Laminarionema elsbetiae ELsaHSoW15)back to top |