mRNA_L-elsbetiae_contig5189.13272.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5189.13272.1
Unique NamemRNA_L-elsbetiae_contig5189.13272.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5189.13272.1 vs. uniprot
Match: A0A6H5KDC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC5_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 9.760e-5
Identity = 38/87 (43.68%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:   61 HDRYFSEGAPESDEEEGSAVVGVNNDFD--YHRLIEEQRFELEELKRAARQASPSNNSRHPPDKVXXXXXXXASDGESQHPLLPPSP 315
            HD +   G   +D    +A   + +D D  YHRLI+EQRFELE+LKRAAR+ASPS  S+H  ++        A D       LPPSP
Sbjct:   11 HDDFEGPGGVVAD---SAAATTIKDDGDSIYHRLIKEQRFELEQLKRAAREASPS--SKHALERPSSATLNDAED------TLPPSP 86
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5189.13272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KDC5_9PHAE9.760e-543.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5189contigL-elsbetiae_contig5189:8463..9922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size446
Cds size444
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816531.0414336-CDS-L-elsbetiae_contig5189:8462..86861622816531.0414336-CDS-L-elsbetiae_contig5189:8462..8686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5189 8463..8686 +
1691683626.8910418-CDS-L-elsbetiae_contig5189:8462..86861691683626.8910418-CDS-L-elsbetiae_contig5189:8462..8686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5189 8463..8686 +
1622816531.0524023-CDS-L-elsbetiae_contig5189:9702..99221622816531.0524023-CDS-L-elsbetiae_contig5189:9702..9922Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5189 9703..9922 +
1691683626.900431-CDS-L-elsbetiae_contig5189:9702..99221691683626.900431-CDS-L-elsbetiae_contig5189:9702..9922Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5189 9703..9922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5189.13272.1prot_L-elsbetiae_contig5189.13272.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5189 8463..9922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5189.13272.1

>prot_L-elsbetiae_contig5189.13272.1 ID=prot_L-elsbetiae_contig5189.13272.1|Name=mRNA_L-elsbetiae_contig5189.13272.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp
MFLFGVPGVASAVGMEKGTSHDRYFSEGAPESDEEEGSAVVGVNNDFDYH
RLIEEQRFELEELKRAARQASPSNNSRHPPDKVATPPPVVASDGESQHPL
LPPSPPPMSPAPAAGRPERYGGVGVGVDFLAAVTRGRRTATASVGGAI
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mRNA from alignment at L-elsbetiae_contig5189:8463..9922+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5189.13272.1 ID=mRNA_L-elsbetiae_contig5189.13272.1|Name=mRNA_L-elsbetiae_contig5189.13272.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1460bp|location=Sequence derived from alignment at L-elsbetiae_contig5189:8463..9922+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCTCTTCGGTGTGCCCGGTGTCGCCAGTGCTGTCGGAATGGAGAA
AGGGACTAGCCATGACCGATATTTTAGCGAGGGTGCTCCAGAAAGCGATG
AGGAGGAGGGGTCAGCGGTTGTTGGTGTCAATAACGATTTTGACTATCAC
CGCTTGATCGAGGAGCAGAGGTTCGAGCTCGAGGAGCTCAAGAGGGCAGC
CCGACAGGCCTCACCGAGCAACAAGTGAGGAAATTAAGAGCTCGTATGTA
CCATAAACCAGTCTACGAGATAGTCATTGTAGCGTTTCGTCCTCCTAGTG
ATGCACGACCTTCCTCGTCTGCTGCACACACACTTTTCATCCTTCATCAT
TTTTGAAAATCAAGCGGCGCGGATCAAACGAGATTTTAAACCCACAATAC
ACACCGCTGCTCGAACGGCCCATGTCGAGACCAACGCACGGTGTACCCGA
GGCTCTTGAGGCCAAATACCGGCGCCGACTTCACCGATGTGACTCTGTAT
CTGCCTGGACCGAAGCGAGGCAAACAAAGTTGCAGTCAATCGCGAAATGG
CGCTACATCGAATCGCGCGCCACAAACAATTCCGGACACAAGACATTTTT
AATTTCTTCTTCCTTCACATTCTATAATTTCCAGTATGTACTGCTGTACG
AAGAAGCAGCACCGCAACGTGCATGTTGTACACACACCGAAACGTGTGGC
AGGCGCCCGAATAAATGGGACGAAAACACACACACACACACACGGGCTCG
ATGGGCTCCTTGTCAGGAGGGCATCTTCCAGAGTACTGAACCGTGGTCAC
ACAGAAGGGTTATTTTACCCAAGGCCCCCGCTCCCCCCTTCTGCGGTGCT
TGCCTACTGTACTGCTGCAGTTTTCCATGATGCCATCCTCCAATTGACTC
TCCCCACAGCCTTTCCAACCATTTTTTGCTGTGCTCGTTGTTTAGGCACA
TCTTTGTTGAAACCGGTCCCCCGCCCGGCGCACTGGCTCTCTTGACCGCG
GTCGGTGTGTTGACGCTGCTGGAGTGAAGCAGAGCGGCAGCAGGCCGAGT
GGAATGTTCACGGGCGACGCTTTACACCGCACCTGCCCGCAGTCGCTGGC
CCGTCCTGACTACGTAACCGTAGATATATAGAAAGCCACAGCTTCCTCGA
AAAACTCGAAAACACTGAGAACTCCACGAACTCCACCAACGGCCTGTCCA
CATGTACCCCCGCTCTCTGCTCACGCTGCTGCGATGCAAGCTCTCGGCAC
CCGCCGGACAAAGTTGCGACGCCGCCGCCCGTGGTTGCTTCCGATGGCGA
ATCGCAGCACCCGCTTCTTCCGCCGTCGCCACCGCCAATGAGCCCAGCGC
CTGCTGCCGGCCGCCCGGAGCGCTACGGGGGCGTCGGGGTCGGCGTCGAC
TTTCTGGCGGCGGTTACACGCGGGAGAAGAACGGCAACTGCCTCGGTGGG
CGGTGCAATT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5189:8463..9922+

>mRNA_L-elsbetiae_contig5189.13272.1 ID=mRNA_L-elsbetiae_contig5189.13272.1|Name=mRNA_L-elsbetiae_contig5189.13272.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig5189:8463..9922+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCTCTTCGGTGTGCCCGGTGTCGCCAGTGCTGTCGGAATGGAGAA
AGGGACTAGCCATGACCGATATTTTAGCGAGGGTGCTCCAGAAAGCGATG
AGGAGGAGGGGTCAGCGGTTGTTGGTGTCAATAACGATTTTGACTATCAC
CGCTTGATCGAGGAGCAGAGGTTCGAGCTCGAGGAGCTCAAGAGGGCAGC
CCGACAGGCCTCACCGAGCAACAAATGTTTCTCTTCGGTGTGCCCGGTGT
CGCCAGTGCTGTCGGAATGGAGAAAGGGACTAGCCATGACCGATATTTTA
GCGAGGGTGCTCCAGAAAGCGATGAGGAGGAGGGGTCAGCGGTTGTTGGT
GTCAATAACGATTTTGACTATCACCGCTTGATCGAGGAGCAGAGGTTCGA
GCTCGAGGAGCTCAAGAGGGCAGCCCGACAGGCCTCACCGAGCAACAACT
CTCGGCACCCGCCGGACAAAGTTGCGACGCCGCCGCCCGTGGTTGCTTCC
GATGGCGAATCGCAGCACCCGCTTCTTCCGCCGTCGCCACCGCCAATGAG
CCCAGCGCCTGCTGCCGGCCGCCCGGAGCGCTACGGGGGCGTCGGGGTCG
GCGTCGACTTTCTGGCGGCGGTTACACGCGGGAGAAGAACGGCAACTGCC
TCGGTGGGCGGTGCAATTCTCTCGGCACCCGCCGGACAAAGTTGCGACGC
CGCCGCCCGTGGTTGCTTCCGATGGCGAATCGCAGCACCCGCTTCTTCCG
CCGTCGCCACCGCCAATGAGCCCAGCGCCTGCTGCCGGCCGCCCGGAGCG
CTACGGGGGCGTCGGGGTCGGCGTCGACTTTCTGGCGGCGGTTACACGCG
GGAGAAGAACGGCAACTGCCTCGGTGGGCGGTGCAATT
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