mRNA_L-elsbetiae_contig5179.13261.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5179.13261.1
Unique NamemRNA_L-elsbetiae_contig5179.13261.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5179.13261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5179contigL-elsbetiae_contig5179:6546..7181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size636
Cds size393
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816530.2572994-CDS-L-elsbetiae_contig5179:6545..69381622816530.2572994-CDS-L-elsbetiae_contig5179:6545..6938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5179 6546..6938 +
1691683626.386694-CDS-L-elsbetiae_contig5179:6545..69381691683626.386694-CDS-L-elsbetiae_contig5179:6545..6938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5179 6546..6938 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816530.2686856-UTR-L-elsbetiae_contig5179:6938..71811622816530.2686856-UTR-L-elsbetiae_contig5179:6938..7181Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5179 6939..7181 +
1691683626.3965406-UTR-L-elsbetiae_contig5179:6938..71811691683626.3965406-UTR-L-elsbetiae_contig5179:6938..7181Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5179 6939..7181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5179.13261.1prot_L-elsbetiae_contig5179.13261.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5179 6546..6938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5179.13261.1

>prot_L-elsbetiae_contig5179.13261.1 ID=prot_L-elsbetiae_contig5179.13261.1|Name=mRNA_L-elsbetiae_contig5179.13261.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
RFASYFYCNYIGSSGCLKVDTLFANLESFFYAPVSPCSAASLLYYASFAQ
GNFRTPGVTAHYGAKEDVIPRLSKPHALFLRLFAAPRCRVCLERLRLCGD
GVPGGGLIHSFAVHFLAVRGKDGRNKRRER*
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mRNA from alignment at L-elsbetiae_contig5179:6546..7181+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5179.13261.1 ID=mRNA_L-elsbetiae_contig5179.13261.1|Name=mRNA_L-elsbetiae_contig5179.13261.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig5179:6546..7181+ (Laminarionema elsbetiae ELsaHSoW15)
CGATTTGCTTCATATTTTTACTGCAACTACATTGGTAGCAGCGGCTGCCT
CAAAGTTGATACCCTCTTCGCCAACCTCGAATCCTTCTTCTACGCCCCCG
TCTCCCCCTGCTCCGCTGCTTCTCTCCTGTACTACGCTTCCTTCGCCCAG
GGTAACTTCAGAACGCCCGGTGTAACTGCCCACTACGGAGCGAAAGAAGA
CGTAATACCACGTTTGTCCAAGCCACACGCCTTGTTTTTGCGGTTGTTCG
CCGCCCCTCGCTGCCGAGTCTGCCTCGAGCGCCTCCGCCTCTGCGGCGAC
GGCGTCCCCGGCGGAGGTCTCATTCACTCCTTCGCAGTCCACTTCTTGGC
AGTCCGAGGAAAAGACGGAAGAAACAAACGACGAGAACGTTGACCACAAC
CACGCCGGTGGCGGCGGTGGCGGGGGGGAAGACGACGAGGTCGACGGCGA
CAAAAAGGACGACGATGACGATAACAGCGGCGGCAGCCGTGTTGTTGTTG
TTGATGATGAGGAGGAGGACGAGGAGGAGAAGGAGGAGGATGGCGGCGAC
GGGTCGTATTCGGACGGCACAGAAAGTGTGTACCGCGAGGTGCTGAAGCC
GAGCGCCGACGACGACGAAGAAGGGGAGGATCTTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5179:6546..7181+

>mRNA_L-elsbetiae_contig5179.13261.1 ID=mRNA_L-elsbetiae_contig5179.13261.1|Name=mRNA_L-elsbetiae_contig5179.13261.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig5179:6546..7181+ (Laminarionema elsbetiae ELsaHSoW15)
CGATTTGCTTCATATTTTTACTGCAACTACATTGGTAGCAGCGGCTGCCT
CAAAGTTGATACCCTCTTCGCCAACCTCGAATCCTTCTTCTACGCCCCCG
TCTCCCCCTGCTCCGCTGCTTCTCTCCTGTACTACGCTTCCTTCGCCCAG
GGTAACTTCAGAACGCCCGGTGTAACTGCCCACTACGGAGCGAAAGAAGA
CGTAATACCACGTTTGTCCAAGCCACACGCCTTGTTTTTGCGGTTGTTCG
CCGCCCCTCGCTGCCGAGTCTGCCTCGAGCGCCTCCGCCTCTGCGGCGAC
GGCGTCCCCGGCGGAGGTCTCATTCACTCCTTCGCAGTCCACTTCTTGGC
AGTCCGAGGAAAAGACGGAAGAAACAAACGACGAGAACGTTGACGATTTG
CTTCATATTTTTACTGCAACTACATTGGTAGCAGCGGCTGCCTCAAAGTT
GATACCCTCTTCGCCAACCTCGAATCCTTCTTCTACGCCCCCGTCTCCCC
CTGCTCCGCTGCTTCTCTCCTGTACTACGCTTCCTTCGCCCAGGGTAACT
TCAGAACGCCCGGTGTAACTGCCCACTACGGAGCGAAAGAAGACGTAATA
CCACGTTTGTCCAAGCCACACGCCTTGTTTTTGCGGTTGTTCGCCGCCCC
TCGCTGCCGAGTCTGCCTCGAGCGCCTCCGCCTCTGCGGCGACGGCGTCC
CCGGCGGAGGTCTCATTCACTCCTTCGCAGTCCACTTCTTGGCAGTCCGA
GGAAAAGACGGAAGAAACAAACGACGAGAACGTTGA
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