mRNA_L-elsbetiae_contig5177.13259.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5177.13259.1
Unique NamemRNA_L-elsbetiae_contig5177.13259.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5177.13259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5177contigL-elsbetiae_contig5177:9350..10051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size702
Cds size693
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816530.0225067-UTR-L-elsbetiae_contig5177:9349..93581622816530.0225067-UTR-L-elsbetiae_contig5177:9349..9358Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5177 9350..9358 +
1691683626.257001-UTR-L-elsbetiae_contig5177:9349..93581691683626.257001-UTR-L-elsbetiae_contig5177:9349..9358Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5177 9350..9358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816530.0338013-CDS-L-elsbetiae_contig5177:9358..100511622816530.0338013-CDS-L-elsbetiae_contig5177:9358..10051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5177 9359..10051 +
1691683626.273993-CDS-L-elsbetiae_contig5177:9358..100511691683626.273993-CDS-L-elsbetiae_contig5177:9358..10051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5177 9359..10051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5177.13259.1prot_L-elsbetiae_contig5177.13259.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5177 9359..10051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5177.13259.1

>prot_L-elsbetiae_contig5177.13259.1 ID=prot_L-elsbetiae_contig5177.13259.1|Name=mRNA_L-elsbetiae_contig5177.13259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=231bp
MYPPQQQQQQQQQQQQQFPDISNPRGSMLSGVGLMSLDSNNVNQPLRPDG
QQQSSMNMPGGGGSAGSAGIVGGQTAPGGGSGGGGGSGGNAWGAFGNSAS
FSPSSAEPSAGGALNGLPAGSRAQQDGGLAGEFSLAGSGSGGGSGYPADR
SPDGGAMFAGLAVGGGGGGGGGDIQAMNATAAAMPGGGLGDPSRPPVQPD
VAPAEQGDWTMYKAADHSDRAYWHNSKSGET
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mRNA from alignment at L-elsbetiae_contig5177:9350..10051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5177.13259.1 ID=mRNA_L-elsbetiae_contig5177.13259.1|Name=mRNA_L-elsbetiae_contig5177.13259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig5177:9350..10051+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGATTTCATGTACCCGCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAACAGTTTCCTGACATCAGCAACCCGCGCGGCAGCATGCTTTCGG
GCGTAGGCTTGATGAGCTTAGACAGCAACAACGTCAACCAGCCGCTTCGC
CCCGATGGACAGCAGCAGTCGTCAATGAACATGCCCGGCGGCGGCGGCAG
TGCCGGCAGCGCAGGCATCGTTGGCGGCCAGACCGCACCAGGCGGCGGCA
GCGGCGGCGGCGGCGGTAGTGGTGGCAACGCCTGGGGGGCGTTCGGCAAT
AGCGCCTCCTTCTCTCCCTCCTCCGCGGAGCCCTCCGCCGGTGGCGCACT
GAACGGCTTGCCGGCGGGGAGCAGAGCTCAGCAGGACGGCGGCCTAGCGG
GAGAGTTTTCGCTTGCAGGTAGCGGCAGTGGCGGCGGCAGCGGCTATCCG
GCCGATCGGAGTCCTGATGGCGGTGCGATGTTTGCCGGACTCGCGGTCGG
TGGTGGCGGCGGCGGCGGCGGCGGCGACATCCAGGCGATGAATGCCACGG
CAGCGGCAATGCCGGGCGGGGGTCTGGGCGATCCCTCCCGCCCTCCGGTG
CAACCGGACGTTGCGCCCGCCGAACAGGGAGACTGGACGATGTATAAGGC
CGCAGACCACAGCGACAGAGCCTATTGGCACAACTCCAAGAGCGGCGAAA
CG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5177:9350..10051+

>mRNA_L-elsbetiae_contig5177.13259.1 ID=mRNA_L-elsbetiae_contig5177.13259.1|Name=mRNA_L-elsbetiae_contig5177.13259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1386bp|location=Sequence derived from alignment at L-elsbetiae_contig5177:9350..10051+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACCCGCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACA
GTTTCCTGACATCAGCAACCCGCGCGGCAGCATGCTTTCGGGCGTAGGCT
TGATGAGCTTAGACAGCAACAACGTCAACCAGCCGCTTCGCCCCGATGGA
CAGCAGCAGTCGTCAATGAACATGCCCGGCGGCGGCGGCAGTGCCGGCAG
CGCAGGCATCGTTGGCGGCCAGACCGCACCAGGCGGCGGCAGCGGCGGCG
GCGGCGGTAGTGGTGGCAACGCCTGGGGGGCGTTCGGCAATAGCGCCTCC
TTCTCTCCCTCCTCCGCGGAGCCCTCCGCCGGTGGCGCACTGAACGGCTT
GCCGGCGGGGAGCAGAGCTCAGCAGGACGGCGGCCTAGCGGGAGAGTTTT
CGCTTGCAGGTAGCGGCAGTGGCGGCGGCAGCGGCTATCCGGCCGATCGG
AGTCCTGATGGCGGTGCGATGTTTGCCGGACTCGCGGTCGGTGGTGGCGG
CGGCGGCGGCGGCGGCGACATCCAGGCGATGAATGCCACGGCAGCGGCAA
TGCCGGGCGGGGGTCTGGGCGATCCCTCCCGCCCTCCGGTGCAACCGGAC
GTTGCGCCCGCCGAACAGGGAGACTGGACGATGTATAAGGCCGCAGACCA
CAGCGACAGAGCCTATTGGCACAACTCCAAGAGCGGCGAAACGATGTACC
CGCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGTTTCCT
GACATCAGCAACCCGCGCGGCAGCATGCTTTCGGGCGTAGGCTTGATGAG
CTTAGACAGCAACAACGTCAACCAGCCGCTTCGCCCCGATGGACAGCAGC
AGTCGTCAATGAACATGCCCGGCGGCGGCGGCAGTGCCGGCAGCGCAGGC
ATCGTTGGCGGCCAGACCGCACCAGGCGGCGGCAGCGGCGGCGGCGGCGG
TAGTGGTGGCAACGCCTGGGGGGCGTTCGGCAATAGCGCCTCCTTCTCTC
CCTCCTCCGCGGAGCCCTCCGCCGGTGGCGCACTGAACGGCTTGCCGGCG
GGGAGCAGAGCTCAGCAGGACGGCGGCCTAGCGGGAGAGTTTTCGCTTGC
AGGTAGCGGCAGTGGCGGCGGCAGCGGCTATCCGGCCGATCGGAGTCCTG
ATGGCGGTGCGATGTTTGCCGGACTCGCGGTCGGTGGTGGCGGCGGCGGC
GGCGGCGGCGACATCCAGGCGATGAATGCCACGGCAGCGGCAATGCCGGG
CGGGGGTCTGGGCGATCCCTCCCGCCCTCCGGTGCAACCGGACGTTGCGC
CCGCCGAACAGGGAGACTGGACGATGTATAAGGCCGCAGACCACAGCGAC
AGAGCCTATTGGCACAACTCCAAGAGCGGCGAAACG
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