Homology
BLAST of mRNA_L-elsbetiae_contig5072.13101.1 vs. uniprot
Match:
D7FXB6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB6_ECTSI)
HSP 1 Score: 122 bits (306), Expect = 1.890e-31
Identity = 56/90 (62.22%), Postives = 73/90 (81.11%), Query Frame = 2
Query: 2 PNDRETLWPSKRNGGRQKALIDQAKKNNTFPGQADLRTNVAKIIGVPEEEVNFTSVREVFACYEAHGVPLPAKAVSSGAVDVVQDFTGWM 271
P +RETLWPSKRN G+Q LI +A +TFPGQA+L+T A+++GVPE++V +T+VREV +CYEAHGV LPA A+SSG V+ V D+TGWM
Sbjct: 223 PPERETLWPSKRNRGKQDRLIARAIAESTFPGQAELKTKTAEMVGVPEDDVKWTAVREVLSCYEAHGVALPAGAISSGLVEGVVDYTGWM 312
BLAST of mRNA_L-elsbetiae_contig5072.13101.1 vs. uniprot
Match:
A0A7R9U2J4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2J4_9STRA)
HSP 1 Score: 50.4 bits (119), Expect = 2.030e-5
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 2
Query: 140 PEEEVNFTSVREVFACYEAHGVPLPAKAVSSGAVDVVQDFTGWM 271
P + V ++ REV ACYEAHG+PLP ++VS+ + V D+T WM
Sbjct: 1 PRDGVRWSEAREVLACYEAHGLPLP-RSVSTMFISDVSDYTAWM 43
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5072.13101.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.89e-31 / Id = 62.22 Expect = 2.03e-5 / Id = 50.00 Sequence D7FXB6_ECTSI A0A7R9U2J4_9STRA
Match Name E-value Identity Description
D7FXB6_ECTSI 1.890e-31 62.22 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9U2J4_9STRA 2.030e-5 50.00 Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 3
Model size 276
Cds size 273
Stop 0
Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816514.3713126-CDS-L-elsbetiae_contig5072:3537..3664 1622816514.3713126-CDS-L-elsbetiae_contig5072:3537..3664 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5072 3538..3664 +
1691683614.8810396-CDS-L-elsbetiae_contig5072:3537..3664 1691683614.8810396-CDS-L-elsbetiae_contig5072:3537..3664 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5072 3538..3664 +
1622816514.3834295-CDS-L-elsbetiae_contig5072:4143..4236 1622816514.3834295-CDS-L-elsbetiae_contig5072:4143..4236 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5072 4144..4236 +
1691683614.8899484-CDS-L-elsbetiae_contig5072:4143..4236 1691683614.8899484-CDS-L-elsbetiae_contig5072:4143..4236 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5072 4144..4236 +
1622816514.3991163-CDS-L-elsbetiae_contig5072:5337..5390 1622816514.3991163-CDS-L-elsbetiae_contig5072:5337..5390 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5072 5338..5390 +
1691683614.8980863-CDS-L-elsbetiae_contig5072:5337..5390 1691683614.8980863-CDS-L-elsbetiae_contig5072:5337..5390 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5072 5338..5390 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5072.13101.1
>prot_L-elsbetiae_contig5072.13101.1 ID=prot_L-elsbetiae_contig5072.13101.1|Name=mRNA_L-elsbetiae_contig5072.13101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
AERQGDAVAEQAQRWQAEGPDRPSQKEQHLPWPGGLEDKCRKDNRSTGGG SQLHERQGGVRLLRGARGSPACKGRELRRGGRRAGLHRLDV back to top mRNA from alignment at L-elsbetiae_contig5072:3538..5392+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5072.13101.1 ID=mRNA_L-elsbetiae_contig5072.13101.1|Name=mRNA_L-elsbetiae_contig5072.13101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1855bp|location=Sequence derived from alignment at L-elsbetiae_contig5072:3538..5392+ (Laminarionema elsbetiae ELsaHSoW15)GCCGAACGACAGGGAGACGCTGTGGCCGAGCAAGCGCAACGGTGGCAGGC
AGAAGGCCCTGATCGACCAAGCCAAAAAGAACAACACCTTCCCTGGCCAG
GCGGACTTGAGGACAAATGTCGCAAAG GTGACGATATCGGGCAACAGTGG
GAGAGAAACAGACAGACATGCAGACAACCAGAGAGGGAGTGCAGAGATCG
AGGCACAGGAAGAGTAGAGACAGAGAGAGAGAGGGTCGAGAGAGAGAGGA
TAAATATGTGGTTAACACTTCGGTAACGTCGGCAAGCGACGCCCGGTGGT
CGCAGTAGTAAAAAACAGTTCGTGTCGAGACAGTAGTGCCAAGACAAACA
AAACCGCGTCTAGTAGCTGCTGGTATAAGACACGCGAGGATGATGAACAA
GCTTATTACCAGTTTCGTTCACTTCACTCTTCGTCCGTGCTAACAATTAA
GCTTCTCAAACTCACTCCTCGTTCTTGCCGAAAGAAAACCAGATCCCGAA
CAAACGCCATTGATTATTTTTTTGTCCATTGCACAACAACAGGACCTGTC
AATCTTTTATTTTGTTTAGTTTGACGTGCTGTGCTGTCTGTCCCCTCTCT
GTACAGATAATCGGAGTACCGGAGGAGGAAGTCAACTTCACGAGCGTCAG
GGAGGTGTTCGCCTGCTACGAGGCGCACGGGGTTCCCCTGCCTGCAAAG G
TACACATGATATATATAGCGATAAAGAATGAATAATGAAAACAAGCAAAC
AGCTAGCTAGCACTGGAACCGATTTTCATTTATCTCGATTACGATCGATG
GTGGCGGCAAGTAATAAGCCCTGTCCATGACCAACGTACCCTTTGGCGGG
GCGCCCCCTGCCAGAGATGGCACGCGCCACGCCCTAAATAAATCTCCCAT
CGTTTTCATTGACACCGAGGACGGCTCCTCGAAGTGGTGGTGGGTGTTAT
TTTGTCCTTACATACTTCCCTTTTTTGGCCGAATCCATCGTTTTTGCCTG
CCTTTCCCAGGGTGTCCCGAACGAAACACCATACACATCAGCCCGCTCTC
AGTGCTATTTTTTTGAGAGATACGTACATCAGATCCTCAAAAACGGGACA
CCTAACTAACCCGCATTGAGACGGGACTCCATGGGGTTCTTCAACCGGTA
TAATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATT
ATTTTATTTGCCATCCGGCAATTGCAGATGATGTATCCAACCAAAATGTC
TTCTAAACTGATGATGCTATTCTTACATGCTCGAATATTATTCCATATCA
AATTTAGTGAATGAAGTGATATTGGTCCGGCCGAGCAGAAAACAAATTGT
TTTTATGTTTTACGTCCAACCTGCGAAAAATTCGTTCCAGGGGGACTGTT
GTTGTAGACACTTAATCCTCCCTCACCGCCCCTTACTACTGCCATTTTTT
GTGCCATTTTTGTGCTGTGAAAATACGAGGAACAACCTCTCAATAACGCC
GCTGTTCTGCTTCACAATATATATTGCCAAAACCCTTTGAAAAAAAGTCG
TCGCGATTAAATTACTTTGATTCGTGATTACTTAAACAAAACGAGTGGGT
TGTGTGTTGTATGTTTGTATGTCCGTATGTACTATTTATGTATGACATGT
TTGACGTATTTTGTATAGGTGTGTGTTAGTATTATCATTTAAAATCAAAA
CCACCCGTCCGTTCGTTCATTCAAATACAAACGGGTCCCCCTACAAACAT
AACAGAACCGAACTAAACAGAACCGAACCGAACCAAACCGAACTGTGCAG
GCCGTGAGCTCCGGCGCGGTGGACGTCGTGCAGGACTTCACCGGCTGGAT
GTG GG back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5072:3538..5392+
>mRNA_L-elsbetiae_contig5072.13101.1 ID=mRNA_L-elsbetiae_contig5072.13101.1|Name=mRNA_L-elsbetiae_contig5072.13101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig5072:3538..5392+ (Laminarionema elsbetiae ELsaHSoW15) GCCGAACGACAGGGAGACGCTGTGGCCGAGCAAGCGCAACGGTGGCAGGC AGAAGGCCCTGATCGACCAAGCCAAAAAGAACAACACCTTCCCTGGCCAG GCGGACTTGAGGACAAATGTCGCAAAGGCCGAACGACAGGGAGACGCTGT GGCCGAGCAAGCGCAACGGTGGCAGGCAGAAGGCCCTGATCGACCAAGCC AAAAAGAACAACACCTTCCCTGGCCAGGCGGACTTGAGGACAAATGTCGC AAAGATAATCGGAGTACCGGAGGAGGAAGTCAACTTCACGAGCGTCAGGG AGGTGTTCGCCTGCTACGAGGCGCACGGGGTTCCCCTGCCTGCAAAGATA ATCGGAGTACCGGAGGAGGAAGTCAACTTCACGAGCGTCAGGGAGGTGTT CGCCTGCTACGAGGCGCACGGGGTTCCCCTGCCTGCAAAGGCCGTGAGCT CCGGCGCGGTGGACGTCGTGCAGGACTTCACCGGCTGGATGTGGCCGTGA GCTCCGGCGCGGTGGACGTCGTGCAGGACTTCACCGGCTGGATGTG back to top