mRNA_L-elsbetiae_contig5059.13087.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5059.13087.1
Unique NamemRNA_L-elsbetiae_contig5059.13087.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5059.13087.1 vs. uniprot
Match: D7FNJ6_ECTSI (Lon protease homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNJ6_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 7.660e-23
Identity = 82/133 (61.65%), Postives = 85/133 (63.91%), Query Frame = 3 
Query:   21 MVLSSVLNQGSRFLRSPAVLGAAG-RGAFRNGQQICRAAPSPPAAGAWSNVR-VGVPHRAFWDW--TGKGGDQGVPKGSGGAAESGG---------RSGGDNTGSDGKGNKFGGSNGVGEAAAEEQPPSPGSG 380
            MVLSSVLNQGSR LRSPAVLGAA  RG FR GQQ  R +P   A  AW+ VR VGV HR FWDW  TGKGGDQG  KGS                 R+G        KG K GGSNGVGEAAAEEQPPSPGSG
Sbjct:    1 MVLSSVLNQGSRLLRSPAVLGAAACRGTFR-GQQAQRVSPCAAAPAAWTTVRAVGVHHRTFWDWSGTGKGGDQGSSKGSXXXXXXXXXXXXXXXIPRNG--------KG-KPGGSNGVGEAAAEEQPPSPGSG 123
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5059.13087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNJ6_ECTSI7.660e-2361.65Lon protease homolog n=2 Tax=Ectocarpus TaxID=2879... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5059contigL-elsbetiae_contig5059:7464..11610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue8.1e-21
Seed eggNOG ortholog2880.D7FNJ6
Preferred namePIM1
KEGG koko:K08675
Hectar predicted targeting categorymitochondrion
GOsGO:0000002,GO:0000166,GO:0001018,GO:0001067,GO:0001666,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003727,GO:0003824,GO:0004175,GO:0004176,GO:0004252,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005829,GO:0006139,GO:0006259,GO:0006508,GO:0006515,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009266,GO:0009295,GO:0009314,GO:0009408,GO:0009507,GO:0009536,GO:0009628,GO:0009719,GO:0009725,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010044,GO:0010165,GO:0010212,GO:0010604,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017171,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022607,GO:0030163,GO:0030554,GO:0031974,GO:0031981,GO:0032042,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034599,GO:0034622,GO:0034641,GO:0035639,GO:0035694,GO:0036094,GO:0036293,GO:0042176,GO:0042221,GO:0042579,GO:0042623,GO:0042645,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043531,GO:0043565,GO:0043632,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045732,GO:0046483,GO:0048518,GO:0050789,GO:0050896,GO:0051131,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051603,GO:0051716,GO:0051880,GO:0060255,GO:0065003,GO:0065007,GO:0070011,GO:0070013,GO:0070182,GO:0070407,GO:0070482,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial
EggNOG OGsCOG0466@1,KOG2004@2759
EC3.4.21.53
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029
Exons3
Model size399
Cds size378
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5059.13087.1prot_L-elsbetiae_contig5059.13087.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5059 7484..11610 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816512.2044265-UTR-L-elsbetiae_contig5059:7463..74831622816512.2044265-UTR-L-elsbetiae_contig5059:7463..7483Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5059 7464..7483 +
1691683613.1298275-UTR-L-elsbetiae_contig5059:7463..74831691683613.1298275-UTR-L-elsbetiae_contig5059:7463..7483Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5059 7464..7483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816512.215848-CDS-L-elsbetiae_contig5059:7483..76361622816512.215848-CDS-L-elsbetiae_contig5059:7483..7636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5059 7484..7636 +
1691683613.1412466-CDS-L-elsbetiae_contig5059:7483..76361691683613.1412466-CDS-L-elsbetiae_contig5059:7483..7636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5059 7484..7636 +
1622816512.227363-CDS-L-elsbetiae_contig5059:9302..94561622816512.227363-CDS-L-elsbetiae_contig5059:9302..9456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5059 9303..9456 +
1691683613.1503167-CDS-L-elsbetiae_contig5059:9302..94561691683613.1503167-CDS-L-elsbetiae_contig5059:9302..9456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5059 9303..9456 +
1622816512.2385533-CDS-L-elsbetiae_contig5059:11539..116101622816512.2385533-CDS-L-elsbetiae_contig5059:11539..11610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5059 11540..11610 +
1691683613.1593404-CDS-L-elsbetiae_contig5059:11539..116101691683613.1593404-CDS-L-elsbetiae_contig5059:11539..11610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5059 11540..11610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5059.13087.1

>prot_L-elsbetiae_contig5059.13087.1 ID=prot_L-elsbetiae_contig5059.13087.1|Name=mRNA_L-elsbetiae_contig5059.13087.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
MVLSSVLNQGSRFLRSPAVLGAAGRGAFRNGQQICRAAPSPPAAGAWSNV
RVGVPHRAFWDWTGKGGDQGVPKGSGGAAESGGRSGGDNTGSDGKGNKFG
GSNGVGEAAAEEQPPSPGSGGGTAGA
back to top

mRNA from alignment at L-elsbetiae_contig5059:7464..11610+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5059.13087.1 ID=mRNA_L-elsbetiae_contig5059.13087.1|Name=mRNA_L-elsbetiae_contig5059.13087.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4147bp|location=Sequence derived from alignment at L-elsbetiae_contig5059:7464..11610+ (Laminarionema elsbetiae ELsaHSoW15)
GCGAGTAGTTGTCTTCGGGCATGGTGTTGTCATCCGTGTTGAACCAGGGA
TCTCGATTTCTCCGCTCTCCAGCTGTGCTAGGCGCTGCGGGCAGAGGCGC
GTTCAGGAACGGGCAGCAAATATGCCGAGCTGCACCCTCCCCGCCAGCAG
CCGGCGCGTGGAGTAACGTGCGGGTACGCTGTTTTCAGAGGTTCATAGAT
GTTTTCGCGCACGATGATTGGATGTCGGCTGTGGTTGACATGCCCAGGTT
CGAGCAGTGCTCTATGCAGGTTCTCTCTCTTGTGGTGCTGGTTTGTTTCG
TTCCGCACTGACTCTGTAGATATCGAGATATGTATGTCTTTTTCCCTGTT
CAAACATTTGTTAGTTTTTTTGGTTTCTAGCAACTGCTTTGATACCGCAC
ACCACACAACACAACAAACCAACCCGACCATAGATACAACCCCTCTTACG
GAATACCGCGATGATGATACTTCTAAGACGCAGAAGAACAAAATACCACC
CGGTGACAGGAGATACCACCCCCCCCTAAGGTTACGAATCACAGGGCCTC
TTCTACAGACCAGGTCACGGGAGATAACCTTCCCCAAAGATTAACGAAAA
CCACAGCCTTTTCTACAGTACTCCCGGAACCCGCCTTCCTGTCGGGGTCT
GTTTTACCACCCGGTGACGGATACCACCCCCCCCCCCCTAAGGTTACGAA
ACCACAGGGGCCCCTTCTACCCCCAGGGACCCAGCCGGCGTCCATACACA
AGCCCTGGTGTTTTGCTTTTACACCAGCGGAGTAATAAACCTAGGTTTTA
GTTGGAGGTAGACGCGAAAACCTAGGCCTACGCTAGGTTTCCGGCCTTTT
GGTTCAACCCGGCGCTCGGCCTAACACGCACCCTAACCACCCTAAACCCT
AACCCTAACCCTAACCCTAACCCACACCCACACACCAGGCTAGGTTGGTG
TGCCGGGTTTTGTGTGGGTGTGGGTTAGGCCTAGGTGGCTGTACCGAGCT
ACTGGTGTATATAAGACTTGACCCCAGGGCTGGTGTATATACGTGATGCG
CCCGGGGACCCGTTCCCGCTGTCGGGTCTGTTTGGTTCGCCTGGGGTTCG
TTTGACACACGGTGCATATTAGCCGAATGGATGTATCCATGAAATCACGG
CACCGTATATACATGAGAGTGGATACCCTATTTGCGGGGTTGTTCCGCTC
GTTAAATCTGCCATGCCATTTGTGTAGGAAAGTACTCTCTGTGCGCGTAT
CAACGTAGGCCACCTAAATATAAGTATGCACTACTAGACACTTCACGGTG
CCCCCGAACACAATTACTCCTCTCTCCTTCATTAAGCAAGCGCCTGTCCC
ATATCCTTCCCATAACCCCCCCCCCCCCCCCCCCCCCCCCACACCCCCCA
CAACACACCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCNNNNNNN
NNNCTTCACGGCCCCCCCAAACACAATTACCCCCCCCCCCTTCATTAAGC
AAGCGCCTGTCCCATATCCTTCCCATACCCCCCCCCCCCCCGCGCCAAAA
AAAAAACAGAAGAAAAATACCACCCGGCTCGCTGGTGCGTGCCTGCCCGA
AAGCCTCGTGCCTGTGAGCGGACCCCTCCTTTTCAGCAAGCCGCTGGCCA
CTCGTCTCTCCGTCTTGCGTGTCTGCAGCTTCCTTGCTGCCTTAAAGTAT
GTAGACTATTGTACATACTTGAACGCCGCTATGTACTGCTGCGTATACAT
CCCTGTACAGCGCCTACAACAGCTTACAACTTTCGAACCACGTGCTACAT
TTGCGCACTGTCATGTGCGCGTTTATTTTCTTACAACAGGTGGGGGTTCC
TCACCGTGCTTTCTGGGACTGGACAGGCAAGGGTGGGGACCAGGGGGTCC
CCAAGGGGAGTGGCGGTGCGGCGGAGAGCGGCGGCCGAAGCGGCGGTGAC
AACACGGGAAGCGACGGCAAGGGCAACAAGTTTGGCGGCTCAAGTAAGTT
GTTGTTGTTTCCTTCACATTAAATGAGTGGACCTCACGACTTTGTCGACA
GGTTCTGGTTCTCCTTTTTCCTAGAACGTTCCGGCTCAACGGCTACTGCG
GGTTGATCTGGGGTTTATAGCCCGTGGTTCGCCAGGGTCGGGGCGGCGGA
CGGCCGAAATTACCCCGCTGGTCAATTGGACTCAGCGTACGTTTTGGGAA
ATACAGGATCCGGGTTCAATTTATTTTCGCCTGCTTTTTTTTTTACCCTA
AACCCTAACCCTAACCCTAACCCCGACCCCGACCCGACCACCCATCGAGA
GGCGTTGGGTAAGTTCTAGGTCACAGGGTGTTGGTTAGGTGCTAGGTTGG
AGGGCAGGGATAGGGCTAGGCCGCGGCTGCGCCGCGGCATGTACACGCGC
GCACTTTTGCGTGCACTTTTGACAGTCCCGCAAACACGTCACAGAACCAC
GCCAAAAGGTCGGAATATTCCTAGAACTCGCTCCTGTCGACAAAGTCGTG
AGGTCTACTGCATTAAATAGCTCGTATAATCGAGATCGATAATTCCAAAA
ATCTAGCAACTCACGGCCCGTGGTGTCACAGAAGTAAATACCGGTGTCCG
GGGGCACCGCCAGAAGAAGAGATCATTTTGTTCAGTACGGAGGTAGATAT
CCGCAAGTTGAGTGCGTGCTGCTCTGTCGTATACGTAGTTGTAGTGTAAG
CCAATTGTAGGAGTATCTTATAGTAGTAGTAGTCGGCGGCGCCGTAGATG
ACGTACGTGTCTACCCACGTAGTGACTGTATCCGCGTACGCTTTTGTAAA
ATTAAAAAAAAGCTCAATATGGAAACCCTTCACGTTCTCCCGCTGGGCTA
TAGCGTGTGTGCCACACACACGCTCGGCACACGCTCGGCAGTACGAGCAA
GTTTTGCTTTCTCTTTTTGCCCCATGTGCAGCTCAAGTAGAGCTCACGAG
CTCGAGAGGTAACGCACACACGGCAGCGGTGTTTTGATTGCCCGCTGATC
CAAGGTCGACATTACACCTCTCAGCGCCAACACGCTCCCCCCCCCCCCCC
CTCTCTCCATGAAGTCTCAAGATGTTTAGACTTGCTCATCGCGGCGAGAA
GAGGGCTCAAGGCACAGCATTTAGTTCATGTTGCAGTTCGAGGGCCCTTG
CTTTTAGCTGAGCTCTTGTCTCGCACCTCCTTCCCTCGCTCCGTGGCACC
AGCGAAAGGCTGGCTGCCCCCCCCCCGCGCCTACACCGCCCCCGCCGAAC
AACCAACCTCACGGTCGCCTCTTGATACTTGCATGGCCTGCTGGTGTCGA
GGCGAGACCCCGAACGAAGTGCTCCATCTCGATCCCCATCTCCGTCTCCA
TCTCCATCTCCATCTCGATCTCCGTCTCCATCTCGATCTCGATCTCCATC
TCCATCTCCACTTACATCTTGGCGAGCAGAAGAAACGCGAACGTTTGTTT
GACCCTTTTCACGTATATTTATGGCGTCTATGTATGTACCGTAATCATGC
GAAGGTTCGCACCCCCGTGTCAGCGTTTTTCTAAAGCGTATTTATCCACA
ACCAGGAGGGTACCACTGTTGCCGAAAAGGGTGGTTTTCGAAACGTCTCG
TCGGGGGCTTTCCAGAGAGGTATCAGTTAGTCTTCGCACCCTCCTGGTTG
TGGAGAAATACGCTTTAGAAAAATGCTTGACACGGCGGTGCGAACCTTCG
ATGATTACGGTATGTAGTACTACTCCTTAACAGGGAAGCATTGATCATGC
GTGACAAAAGAAAACACCCCATCCACCCCGTTTGCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCGNNNNNNNNTTATTTGTTATTTCTCATCCACACAA
AACAGGGAAACATCACCCACAAAAAAAAAAAAACCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCGTCCTGTAAAACTGCTGTTGGTTGCA
TATGACACGCGACACGCTGCCGAACCCTAACCCTAACCCTAACCCTAAGC
CCCTACCCCCGGTGCCGATGCGAAAGATGGCGTGGGCGAAGCCGCCGCGG
AGGAGCAACCCCCTTCTCCCGGGAGCGGCGGGGGCACGGCGGGGGCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5059:7464..11610+

>mRNA_L-elsbetiae_contig5059.13087.1 ID=mRNA_L-elsbetiae_contig5059.13087.1|Name=mRNA_L-elsbetiae_contig5059.13087.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig5059:7464..11610+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGTTGTCATCCGTGTTGAACCAGGGATCTCGATTTCTCCGCTCTCC
AGCTGTGCTAGGCGCTGCGGGCAGAGGCGCGTTCAGGAACGGGCAGCAAA
TATGCCGAGCTGCACCCTCCCCGCCAGCAGCCGGCGCGTGGAGTAACGTG
CGGATGGTGTTGTCATCCGTGTTGAACCAGGGATCTCGATTTCTCCGCTC
TCCAGCTGTGCTAGGCGCTGCGGGCAGAGGCGCGTTCAGGAACGGGCAGC
AAATATGCCGAGCTGCACCCTCCCCGCCAGCAGCCGGCGCGTGGAGTAAC
GTGCGGGTGGGGGTTCCTCACCGTGCTTTCTGGGACTGGACAGGCAAGGG
TGGGGACCAGGGGGTCCCCAAGGGGAGTGGCGGTGCGGCGGAGAGCGGCG
GCCGAAGCGGCGGTGACAACACGGGAAGCGACGGCAAGGGCAACAAGTTT
GGCGGCTCAAGTGGGGGTTCCTCACCGTGCTTTCTGGGACTGGACAGGCA
AGGGTGGGGACCAGGGGGTCCCCAAGGGGAGTGGCGGTGCGGCGGAGAGC
GGCGGCCGAAGCGGCGGTGACAACACGGGAAGCGACGGCAAGGGCAACAA
GTTTGGCGGCTCAAATGGCGTGGGCGAAGCCGCCGCGGAGGAGCAACCCC
CTTCTCCCGGGAGCGGCGGGGGCACGGCGGGGGCGATGGCGTGGGCGAAG
CCGCCGCGGAGGAGCAACCCCCTTCTCCCGGGAGCGGCGGGGGCACGGCG
GGGGCG
back to top