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Homology
BLAST of mRNA_L-elsbetiae_contig5032.13054.1 vs. uniprot
Match: D7FGX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX5_ECTSI) HSP 1 Score: 304 bits (779), Expect = 1.320e-98 Identity = 152/211 (72.04%), Postives = 168/211 (79.62%), Query Frame = 3
Query: 129 IVWYLALGASFPIAGYARTASPRSAQRRRRPLMMQGRTAADEWEASSRQGIVESATDEESPREGP--HPLRTADWKLEMRSGPWKRREQEVTFHRNGTMSSSDGNNGEWWFDVGGLYWDVNTTFRAAPTVLHHKAELHWNVFGSQPRMFRGTVTRDRLPKSLMPPWLFRPVINSFVGSGVGDDTADTSYRHRQLGTSEHERVP--LQTDRY 749
++ Y+ALG S P+ G +R R L+MQGRTAADEWEAS+RQGI+ESA E RE HPLRT DW L++RS PW RREQEVTFHRNGTMSS+DGN GEWWFDVGGLYWDVNTT RAAPTVLHHKAELHWNVFGSQPRMFRGT+TRDRLP S +PPWLFRPV+ SF+GSGVGDDTADTSYRHRQ GTSE P +TDRY
Sbjct: 7 LILYVALGGSLPLIGCSRGFGRR--------LLMQGRTAADEWEASTRQGILESAAIEAG-RESQESHPLRTQDWTLQIRSSPWTRREQEVTFHRNGTMSSNDGNKGEWWFDVGGLYWDVNTTIRAAPTVLHHKAELHWNVFGSQPRMFRGTITRDRLPNSPLPPWLFRPVVGSFIGSGVGDDTADTSYRHRQTGTSEQAGAPPPRRTDRY 208
BLAST of mRNA_L-elsbetiae_contig5032.13054.1 vs. uniprot
Match: A0A835YRW5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRW5_9STRA) HSP 1 Score: 171 bits (432), Expect = 8.410e-48 Identity = 77/135 (57.04%), Postives = 101/135 (74.81%), Query Frame = 3
Query: 303 ESPREGPHPLRTADWKLEMRS--GPWKRREQEVTFHRNGTMSSSDGNNGEWWFDVGGLYWDVNTTFRAAPTVLHHKAELHWNVFGSQPRMFRGTVTRDRLPKSLMPPWLFRPVINSFVGSGVGDDTADTSYRHRQ 701
E + PHPLRTA+W++ R G +KR ++ TFH++GT+ S +G WWFDVGGL+W++ + T H++AELHWN+FG+QPRMFRGTVTRDR P S MPPWL RPVI++F G G+GDDTADT+Y+HRQ
Sbjct: 2 EEDEDAPHPLRTAEWRMSTRKLLG-FKREDEYFTFHKDGTVESPGKADGRWWFDVGGLHWELK---EPSATATHYRAELHWNIFGTQPRMFRGTVTRDRSPSSFMPPWLLRPVISTFTGYGIGDDTADTTYKHRQ 132
BLAST of mRNA_L-elsbetiae_contig5032.13054.1 vs. uniprot
Match: A0A0G4EMR7_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EMR7_VITBC) HSP 1 Score: 124 bits (311), Expect = 1.020e-29 Identity = 65/132 (49.24%), Postives = 87/132 (65.91%), Query Frame = 3
Query: 315 EGPHPLRTADWKLEMRSGPWKRR-EQEVTFHRNGTMSSSDGNNGEWWFDVGGLYWDV---NTTFRAAPTVLHHKAELHWNVFGSQPRMFRGTVTRDRLPKSLMPPWLFRPVINSFVGSGVGDDTADTSYRHR 698
+ PHPLR +WKL +R G ++RR E + F R+G++ +SDG+ GEW D G+ W+ NTT R + AE+HWNVFGSQPRM++G +TRDR ++ + LFRPVI +F G G G DTAD SYR R
Sbjct: 58 DSPHPLRMEEWKLRVRRGLFRRRSEMRINFRRDGSLQTSDGHKGEWRLDKFGVMWEFLVDNTTHR-------YMAEVHWNVFGSQPRMYKGVITRDR--RAPIRADLFRPVIGTFTGIGCGTDTADVSYRDR 180
BLAST of mRNA_L-elsbetiae_contig5032.13054.1 vs. uniprot
Match: A0A7S1BFC3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BFC3_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.920e-29 Identity = 64/134 (47.76%), Postives = 87/134 (64.93%), Query Frame = 3
Query: 324 HPLRTADWKLEMRSGPWKRREQ-EVTFHRNGTMSSSDGNN--GEWWFDVGGLYWDVNTTF---RAAPTVLHHKAELHWNVFGSQPRMFRGTVTRDRLPKSLMPPWLFRPVINSFVGSGVGDDTADTSYRHRQLG 707
HPLR A WK+ +R G + + + F+R+G +S DG+ GEWWFD GG+ WD++ T A T H+ A++H N FG +PRM++G VTRDR S +PP LFRPVI +F GVG DT DT+Y++R LG
Sbjct: 142 HPLRMALWKVNLRLGMARSADSIQFYFNRSGKVSMHDGSGVTGEWWFDQGGISWDMDITDVDNNAKKTTYHYHADIHMNKFGERPRMYKGVVTRDRYKNSFLPPSLFRPVIATFSAQGVGKDTRDTTYKNRLLG 275
BLAST of mRNA_L-elsbetiae_contig5032.13054.1 vs. uniprot
Match: A0A7S2V1B7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1B7_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 5.290e-18 Identity = 46/122 (37.70%), Postives = 68/122 (55.74%), Query Frame = 3
Query: 327 PLRTADWKLEMRSGPWKRREQEVTFHRNG------TMSSSDGNNGEWWFDVGGLYWDVNTTFRAAPTVLHHKAELHWNVFGSQPRMFRGTVTRDRLPKSLMPPWLFRPVINSFVGSGVGDDT 674
PLR W++ R+G +R++ + F+ G + + +G G+W + GL W + R + A +H N FG+ P+MFRG V RDR S +PPWLFRPV+ +F G GVG+DT
Sbjct: 78 PLRMEKWEIIFRTGLSERKQSSIQFYHTGGEDDKGDLRTDEGETGDWAMEKLGLQWQI----RRNGVAYTYYALVHHNTFGAAPKMFRGVVVRDRFASSFLPPWLFRPVVATFHGHGVGEDT 195
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 310.8 |
Seed ortholog evalue | 5.6e-82 |
Seed eggNOG ortholog | 2880.D7FGX5 |
Hectar predicted targeting category | other localisation |
EggNOG OGs | 2ETV3@1,2SW48@2759 |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Ec32 ortholog description | conserved unknown protein |
Ec32 ortholog | Ec-11_000990.1 |
Exons | 3 |
Model size | 1469 |
Cds size | 744 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816508.2533855-UTR-L-elsbetiae_contig5032:6513..7230 | 1622816508.2533855-UTR-L-elsbetiae_contig5032:6513..7230 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5032 6514..7230 - |
1691683610.3064198-UTR-L-elsbetiae_contig5032:6513..7230 | 1691683610.3064198-UTR-L-elsbetiae_contig5032:6513..7230 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5032 6514..7230 - |
1622816508.3049622-UTR-L-elsbetiae_contig5032:10240..10248 | 1622816508.3049622-UTR-L-elsbetiae_contig5032:10240..10248 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5032 10241..10248 - |
1691683610.3501005-UTR-L-elsbetiae_contig5032:10240..10248 | 1691683610.3501005-UTR-L-elsbetiae_contig5032:10240..10248 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5032 10241..10248 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816508.2660446-CDS-L-elsbetiae_contig5032:7230..7506 | 1622816508.2660446-CDS-L-elsbetiae_contig5032:7230..7506 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5032 7231..7506 - |
1691683610.3193402-CDS-L-elsbetiae_contig5032:7230..7506 | 1691683610.3193402-CDS-L-elsbetiae_contig5032:7230..7506 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5032 7231..7506 - |
1622816508.2768536-CDS-L-elsbetiae_contig5032:9198..9318 | 1622816508.2768536-CDS-L-elsbetiae_contig5032:9198..9318 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5032 9199..9318 - |
1691683610.3287063-CDS-L-elsbetiae_contig5032:9198..9318 | 1691683610.3287063-CDS-L-elsbetiae_contig5032:9198..9318 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5032 9199..9318 - |
1622816508.289845-CDS-L-elsbetiae_contig5032:9892..10240 | 1622816508.289845-CDS-L-elsbetiae_contig5032:9892..10240 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5032 9893..10240 - |
1691683610.34018-CDS-L-elsbetiae_contig5032:9892..10240 | 1691683610.34018-CDS-L-elsbetiae_contig5032:9892..10240 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5032 9893..10240 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5032.13054.1 >prot_L-elsbetiae_contig5032.13054.1 ID=prot_L-elsbetiae_contig5032.13054.1|Name=mRNA_L-elsbetiae_contig5032.13054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=248bp
MQARHRSPTPPREFLLPAAAPGRLGAPGDYYYTKMKQAVMIVWYLALGAS FPIAGYARTASPRSAQRRRRPLMMQGRTAADEWEASSRQGIVESATDEES PREGPHPLRTADWKLEMRSGPWKRREQEVTFHRNGTMSSSDGNNGEWWFD VGGLYWDVNTTFRAAPTVLHHKAELHWNVFGSQPRMFRGTVTRDRLPKSL MPPWLFRPVINSFVGSGVGDDTADTSYRHRQLGTSEHERVPLQTDRY* back to topmRNA from alignment at L-elsbetiae_contig5032:6514..10248- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5032.13054.1 ID=mRNA_L-elsbetiae_contig5032.13054.1|Name=mRNA_L-elsbetiae_contig5032.13054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3735bp|location=Sequence derived from alignment at L-elsbetiae_contig5032:6514..10248- (Laminarionema elsbetiae ELsaHSoW15) GTTCCTGAATGCAGGCCCGCCACCGGAGCCCCACACCCCCACGGGAATTT
CTGCTCCCCGCAGCGGCCCCCGGTCGACTAGGCGCGCCAGGCGACTACTA
CTACACGAAGATGAAGCAGGCCGTCATGATAGTGTGGTACCTGGCATTGG
GGGCGAGCTTTCCAATAGCTGGTTATGCTCGCACCGCTAGCCCCCGGTCT
GCGCAAAGAAGGCGAAGGCCACTGATGATGCAAGGTCGCACAGCTGCCGA
CGAGTGGGAGGCATCCAGTAGGCAGGGGATCGTGGAGAGCGCAACGGACG
AAGAGAGCCCGAGAGAAGGGCCCCATCCTTTGAGAACAGCAGACTGGAAA
TTAGAGGCAAGGCAAATAATACAAGAAGTGATAGTAGGATGTTAACTCCT
GCAGACATCACATCATACGTCACGTACATGAAGTACCGTACATCACTCGA
TTCATTTGGCAACGCATTCCATGCGTGCACCAAATAATATATTATTCGCT
CCAACGCAAGAGAGCGGACATCCTCCAACACAGATTCACCTCATCTACAG
ACTCGGATGTCGCTGTTGGATGCACGGTTTGAATGATTTGTACAGCGTGC
GGCCTGATTTTGCGACGTGCCAACATTGCGGAGTTCTGTATTCGACGATG
GCTCCCGCAATCCTGCAACTCCATGGAAGAAAAAGCCCCAGTGTTCACCT
CCTGTGTGACCCCGGTTGGTTAGTTGTACAGACAAATGCACTGTAAAGTG
TAGTACCTCTAAGTACACCGCAAGGTGTAGTACACGTCTCCACTTGGGGG
GACTGTCGCCAAAATAAACGGGAAGGACACACACACACATGGCTAGCGAA
CGGTTTAATATGTCAGGCGCAATTCTGTTTTTAATTTTCCCCGCGGGGTT
CTCTTCGTTATTTTCAATTGGGGTTGGCAGATGCGTTCGGGTCCATGGAA
GCGACGAGAGCAGGAGGTTACATTCCATCGCAATGGCACCATGTCAAGCA
GCGACGGCAACAACGGAGAGTGGTGGTTCGACGTCGGCGGGCTTTATTGG
GTGTGTACAGCTCAGCAGGCATTACCGTTGGAGCAAGTAGCTAGACTTAA
TCTATCTTGTTCGTTTTGCAAGCAATCTTAACTAGTGTTCGAAACGCACC
CATACTCCCAAACCCGGCCTGCTACATGCGTTTACATCGTTTCTTTCTTT
CTTTCGACACCGGTTTTTATGGGAGCGGAAAGTTGAGAGAAAAGTAAAAG
TGTCTGAACTTTTCTCTCCAACTTTCTCATGTACGCTCTTTATGGGAGCA
AAAAGTTGCGATAAAAGTTGCGAAACTTTTGGTTTGTCAACTGTTGCCCG
GTCGCGAGCAAAAGTTTGCAAGAAAGTTTGCAAACTTTTGACGAGCAAAT
GTGGCGAAGAAAAGTTGAGCGGCGGGACTTCAGCCAATCCACGCCAAGCG
CCTACTCCACCACACAAGTAACCTCTCTCTACCGCCACTCACACACACCC
GATCCGCGCGACCTTTGAACAGCCGGCTCAGATCACTTGAACGATGAGTT
GGAATTGCCTGCGATGCCTGCAGCTGTGTAGATTAGACTACACGTATATA
GAGAGTGCACCACCAGTTTTTCGCCAAACAAGAGCAATTCCTAATTTGAT
TGAAAGGCATAAGCGCCAGATTTGATACCACCCACTGGATTTCCATGCTT
TCGTGAGACGCTCTGGCCGTATTCGTGTGTTTGAAGAGGTGTGCTTGCAT
CTCACCGTTGCTCAATAAAAAATCAAGGATCACGCCTCCACATTCCACCA
GCCCCGTGAACAAACTTTTGTTCGCCCCATAAAGAGCGTGCAAGGAAAGC
TTCACTGACCAAAAGTCTCGACATAAAGTTGGGAAAAAAGTTGAACTTTT
CTCTCAACTTTTCGTTCCCATAAAAACCGGTGTAAGGCGGCGTCCACCCG
ATCCGGCTCTTTGTGTGGGTTCGGAGATACTAGGGGAGAGGCTAGCGCCG
TGACTGCCACGCCGACTTAAATGTTTGAGGTTAATAAGAACACTTTCTAG
TACGACCCTGGCGTCCCGCCGTGTGACCCCTGCCGTGTTTCAGAAGCAAC
AGCAGTTTGCATTTCTCCACAGAGAGAGACTCCGCAGCCCCTTGCTTGTA
GCTGCGGGAAGGCGCAGATTTTGCTGCTGCAAGGTGCAAATTTTCACATT
CAAAATGGCTGATTGTTGTTCAGGAGAATAGATAGCTCGTCCATCACAAG
CAACAACAGCGCCCTTCCCTTGGGAGGGCCTATTAATATGGTCTGTAGGG
GCCGTCGCATGTCCTGACAGCAGCAGCAGGTACCTATCAGCTACGCTTCC
GATGTTCTGGCTGACACGAACGATATTCGCAACATCTCTTTTCCCCGTTA
TCTGCGGTGAATTTTAGTTTTTTTGCGTCATCGCTCCGAAGCCTCACGCC
ATGTTCTTTGCGGCAACAAATTAATGGACGCGACGCGATTGTAGCCCGGC
TGTTTCGGCAGAGCATGAAATATTTCAGGGGGTTATCAGCAGCATTGGCC
GGACAAATCATGTCAAACGCGCAAGGGGTGCTTAATAGAATAAGTGGCAG
TCACGGCGCAACAATTATCCATACCCCTTGAACAGCCGGAGCACGTGGAC
CGCAGGCTTAATGTATGTTTTTGTGTAGCCGACAGTAGTTACATGGTGTT
GTGCTGACGTGTTGCTGTTGCATGTTCCCGATAATACGACAGGACGTGAA
CACGACCTTTCGAGCAGCGCCAACTGTGCTCCACCACAAAGCTGAGCTAC
ACTGGAATGTCTTTGGCTCGCAACCCCGGATGTTCCGCGGCACCGTCACC
CGAGACCGTCTGCCAAAGTCATTGATGCCGCCATGGCTGTTCCGCCCGGT
TATCAACTCTTTCGTAGGATCAGGGGTGGGTGATGATACAGCGGACACGT
CTTACAGACACCGCCAGCTGGGAACAAGCGAACACGAAAGAGTCCCGCTG
CAGACAGATCGCTACTGACGAGATCTACCTTCGCTTATATTTTGGATTGC
CATGGAAATGGAAACTTGGCATTGGAATTTTGTTCCGGGCTTGTTGTAGT
GGCTGCTGTTGCTGCTGTTGATGGTAATTTTGCAACCCTGATTGGGGCAG
CCTTTTAGGTGTGGAGACTGTCACATCCTGCGCTGGCGTGGGAACGAAAA
TTTAGCTATTTATTATTGCCAACATTGGCGTAGCGTGCGCACGCACGCAC
GGTACTTGAAGAATTGTTTCATGGGCATAGATATGCACTTTTGCCCGCGT
TCCTTCAGCTGTGTGGCACGGTCGTGGCTGCTCTTCAAGAGCGGACGCTT
CAGGGAGAAACGACGAAGTGTATTGTTTGTACGTCAAAGCTGGACCGCTT
CTCTAAAAGCCGGGGGCGGTTGCTGTTTTTTGTTGTGTAGCAGTACCACC
AAATTCTCTCTACAAATTGACGCGTCTGACCGCTGGACCGTGCGGAATTA
GCTTGTAATTCAGCGTCGTGACGCACTACATAGTCACCGGGCATTTGTTT
TGCAACTCGCCCGACGCCAGAAGAGCGATCCGCGTAGTGAGGCAGTCAGC
AGGCCTACATATATGTGTCTAGATAGATATATTGTATTTATATTGAGATA
ATTATGGCGCTGATACTTGGTTTTGCATTGACATCAATACCGCTTCTGCT
GCGGTTTTTCGCCCCTGGACTCAATAATATTTACA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5032:6514..10248- >mRNA_L-elsbetiae_contig5032.13054.1 ID=mRNA_L-elsbetiae_contig5032.13054.1|Name=mRNA_L-elsbetiae_contig5032.13054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1488bp|location=Sequence derived from alignment at L-elsbetiae_contig5032:6514..10248- (Laminarionema elsbetiae ELsaHSoW15) ATGCAGGCCCGCCACCGGAGCCCCACACCCCCACGGGAATTTCTGCTCCC CGCAGCGGCCCCCGGTCGACTAGGCGCGCCAGGCGACTACTACTACACGA AGATGAAGCAGGCCGTCATGATAGTGTGGTACCTGGCATTGGGGGCGAGC TTTCCAATAGCTGGTTATGCTCGCACCGCTAGCCCCCGGTCTGCGCAAAG AAGGCGAAGGCCACTGATGATGCAAGGTCGCACAGCTGCCGACGAGTGGG AGGCATCCAGTAGGCAGGGGATCGTGGAGAGCGCAACGGACGAAGAGAGC CCGAGAGAAGGGCCCCATCCTTTGAGAACAGCAGACTGGAAATTAGAGAT GCAGGCCCGCCACCGGAGCCCCACACCCCCACGGGAATTTCTGCTCCCCG CAGCGGCCCCCGGTCGACTAGGCGCGCCAGGCGACTACTACTACACGAAG ATGAAGCAGGCCGTCATGATAGTGTGGTACCTGGCATTGGGGGCGAGCTT TCCAATAGCTGGTTATGCTCGCACCGCTAGCCCCCGGTCTGCGCAAAGAA GGCGAAGGCCACTGATGATGCAAGGTCGCACAGCTGCCGACGAGTGGGAG GCATCCAGTAGGCAGGGGATCGTGGAGAGCGCAACGGACGAAGAGAGCCC GAGAGAAGGGCCCCATCCTTTGAGAACAGCAGACTGGAAATTAGAGATGC GTTCGGGTCCATGGAAGCGACGAGAGCAGGAGGTTACATTCCATCGCAAT GGCACCATGTCAAGCAGCGACGGCAACAACGGAGAGTGGTGGTTCGACGT CGGCGGGCTTTATTGGATGCGTTCGGGTCCATGGAAGCGACGAGAGCAGG AGGTTACATTCCATCGCAATGGCACCATGTCAAGCAGCGACGGCAACAAC GGAGAGTGGTGGTTCGACGTCGGCGGGCTTTATTGGGACGTGAACACGAC CTTTCGAGCAGCGCCAACTGTGCTCCACCACAAAGCTGAGCTACACTGGA ATGTCTTTGGCTCGCAACCCCGGATGTTCCGCGGCACCGTCACCCGAGAC CGTCTGCCAAAGTCATTGATGCCGCCATGGCTGTTCCGCCCGGTTATCAA CTCTTTCGTAGGATCAGGGGTGGGTGATGATACAGCGGACACGTCTTACA GACACCGCCAGCTGGGAACAAGCGAACACGAAAGAGTCCCGCTGCAGACA GATCGCTACTGAGACGTGAACACGACCTTTCGAGCAGCGCCAACTGTGCT CCACCACAAAGCTGAGCTACACTGGAATGTCTTTGGCTCGCAACCCCGGA TGTTCCGCGGCACCGTCACCCGAGACCGTCTGCCAAAGTCATTGATGCCG CCATGGCTGTTCCGCCCGGTTATCAACTCTTTCGTAGGATCAGGGGTGGG TGATGATACAGCGGACACGTCTTACAGACACCGCCAGCTGGGAACAAGCG AACACGAAAGAGTCCCGCTGCAGACAGATCGCTACTGA back to top
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