mRNA_L-elsbetiae_contig5013.13025.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5013.13025.1
Unique NamemRNA_L-elsbetiae_contig5013.13025.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5013.13025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5013contigL-elsbetiae_contig5013:12564..13028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMajor Facilitator Superfamily (MFS) protein domains
Ec32 orthologEc-06_007360.4
Exons1
Model size465
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5013.13025.1prot_L-elsbetiae_contig5013.13025.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5013 12628..12942 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816505.205602-UTR-L-elsbetiae_contig5013:12563..126271622816505.205602-UTR-L-elsbetiae_contig5013:12563..12627Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5013 12564..12627 +
1691683608.1538157-UTR-L-elsbetiae_contig5013:12563..126271691683608.1538157-UTR-L-elsbetiae_contig5013:12563..12627Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5013 12564..12627 +
1622816505.2292066-UTR-L-elsbetiae_contig5013:12942..130281622816505.2292066-UTR-L-elsbetiae_contig5013:12942..13028Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5013 12943..13028 +
1691683608.1762104-UTR-L-elsbetiae_contig5013:12942..130281691683608.1762104-UTR-L-elsbetiae_contig5013:12942..13028Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5013 12943..13028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816505.2171474-CDS-L-elsbetiae_contig5013:12627..129421622816505.2171474-CDS-L-elsbetiae_contig5013:12627..12942Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5013 12628..12942 +
1691683608.1632898-CDS-L-elsbetiae_contig5013:12627..129421691683608.1632898-CDS-L-elsbetiae_contig5013:12627..12942Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5013 12628..12942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5013.13025.1

>prot_L-elsbetiae_contig5013.13025.1 ID=prot_L-elsbetiae_contig5013.13025.1|Name=mRNA_L-elsbetiae_contig5013.13025.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MYVQRDVCAAVAQEGEHCWDSFLLFVILYCPTFFSCGACGPCFLSREKGS
AAPFPRHRFKSKFVYSHPPLKRRIYSVHSTGRCQYLTLFFLEGGGNATLL
VVFI*
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mRNA from alignment at L-elsbetiae_contig5013:12564..13028+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5013.13025.1 ID=mRNA_L-elsbetiae_contig5013.13025.1|Name=mRNA_L-elsbetiae_contig5013.13025.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=465bp|location=Sequence derived from alignment at L-elsbetiae_contig5013:12564..13028+ (Laminarionema elsbetiae ELsaHSoW15)
CACACGTTTCGGTGTGGTGTATGTACTATGGTAATTAGTACACGTTTCGG
TGCATGTTCTCTGTATGTATGTACAACGAGACGTATGCGCCGCAGTCGCA
CAGGAGGGCGAACACTGCTGGGACTCTTTTCTTCTCTTTGTTATTCTTTA
TTGCCCCACCTTTTTCTCCTGCGGTGCTTGCGGGCCCTGTTTTTTATCGC
GAGAAAAGGGTTCAGCCGCCCCTTTCCCTCGTCACCGGTTTAAGTCGAAG
TTTGTTTACTCACATCCTCCTCTCAAAAGACGAATATATAGTGTACATTC
CACCGGACGATGCCAATACTTGACTCTCTTCTTCTTGGAGGGTGGGGGCA
ATGCGACTTTGTTGGTGGTATTTATTTAGCCCAGCCGCTTCTTGCTTTGC
GCGCGACAGCCGTGTGCTGGCATCCTTTCGTCGCGGTCTAATGCAAACAC
CGAAATCTAACCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5013:12564..13028+

>mRNA_L-elsbetiae_contig5013.13025.1 ID=mRNA_L-elsbetiae_contig5013.13025.1|Name=mRNA_L-elsbetiae_contig5013.13025.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig5013:12564..13028+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGTACAACGAGACGTATGCGCCGCAGTCGCACAGGAGGGCGAACA
CTGCTGGGACTCTTTTCTTCTCTTTGTTATTCTTTATTGCCCCACCTTTT
TCTCCTGCGGTGCTTGCGGGCCCTGTTTTTTATCGCGAGAAAAGGGTTCA
GCCGCCCCTTTCCCTCGTCACCGGTTTAAGTCGAAGTTTGTTTACTCACA
TCCTCCTCTCAAAAGACGAATATATAGTGTACATTCCACCGGACGATGCC
AATACTTGACTCTCTTCTTCTTGGAGGGTGGGGGCAATGCGACTTTGTTG
GTGGTATTTATTTAGATGTATGTACAACGAGACGTATGCGCCGCAGTCGC
ACAGGAGGGCGAACACTGCTGGGACTCTTTTCTTCTCTTTGTTATTCTTT
ATTGCCCCACCTTTTTCTCCTGCGGTGCTTGCGGGCCCTGTTTTTTATCG
CGAGAAAAGGGTTCAGCCGCCCCTTTCCCTCGTCACCGGTTTAAGTCGAA
GTTTGTTTACTCACATCCTCCTCTCAAAAGACGAATATATAGTGTACATT
CCACCGGACGATGCCAATACTTGACTCTCTTCTTCTTGGAGGGTGGGGGC
AATGCGACTTTGTTGGTGGTATTTATTTAG
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