mRNA_L-elsbetiae_contig5012.13023.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5012.13023.1 vs. uniprot
Match: D7G888_ECTSI (Ammonium transporter (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G888_ECTSI) HSP 1 Score: 171 bits (434), Expect = 6.410e-52 Identity = 81/106 (76.42%), Postives = 93/106 (87.74%), Query Frame = 2 Query: 5 SSVALAVDTAWILTGALMVFFMQTGFAMLEVGSVSIKNTKNILVKNIGDSAMGAIGWWLIGNGLAFGETSGGFLGTSGFALKSEDLYGSTSGEFSSLGYAQWVFQW 322 + VA+AVD+ W+L GA MVFFMQ GFAMLE GSVSIKNTKNIL+KNIGDSAMGAIGWWL GNGLAFG+ SGGFLGT+GFALK E ++G+TSG+F SL YA W+FQW Sbjct: 9 ADVAVAVDSLWVLLGASMVFFMQAGFAMLEAGSVSIKNTKNILIKNIGDSAMGAIGWWLFGNGLAFGKDSGGFLGTTGFALKDESMFGTTSGDFVSLSYANWIFQW 114
BLAST of mRNA_L-elsbetiae_contig5012.13023.1 vs. uniprot
Match: D7G265_ECTSI (Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G265_ECTSI) HSP 1 Score: 175 bits (444), Expect = 7.990e-51 Identity = 83/106 (78.30%), Postives = 94/106 (88.68%), Query Frame = 2 Query: 5 SSVALAVDTAWILTGALMVFFMQTGFAMLEVGSVSIKNTKNILVKNIGDSAMGAIGWWLIGNGLAFGETSGGFLGTSGFALKSEDLYGSTSGEFSSLGYAQWVFQW 322 + VALAVDTAW+L GA MVFFMQ GFAMLEVGSVSIKNTKNIL+KNIGDSAMGAIGWWL GNGLAFG SGGF+G +GFALK EDLYG+++G+F +L YA W+FQW Sbjct: 9 TDVALAVDTAWVLLGAAMVFFMQAGFAMLEVGSVSIKNTKNILIKNIGDSAMGAIGWWLFGNGLAFGRDSGGFVGVTGFALKGEDLYGTSTGDFDALSYANWLFQW 114
BLAST of mRNA_L-elsbetiae_contig5012.13023.1 vs. uniprot
Match: A0A6H5J7X8_9PHAE (Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7X8_9PHAE) HSP 1 Score: 171 bits (432), Expect = 4.460e-49 Identity = 80/106 (75.47%), Postives = 93/106 (87.74%), Query Frame = 2 Query: 5 SSVALAVDTAWILTGALMVFFMQTGFAMLEVGSVSIKNTKNILVKNIGDSAMGAIGWWLIGNGLAFGETSGGFLGTSGFALKSEDLYGSTSGEFSSLGYAQWVFQW 322 + VA+AVD+ W+L GA MVFFMQ GFAMLE GSVSIKNTKNIL+KNIGDSAMGAIGWWL GNGLAFG+ SGGFLGT+GFALK E ++G+TSG+F L YA+W+FQW Sbjct: 9 ADVAMAVDSLWVLLGAAMVFFMQAGFAMLEAGSVSIKNTKNILIKNIGDSAMGAIGWWLFGNGLAFGKDSGGFLGTTGFALKDESMFGTTSGDFVPLSYAKWIFQW 114
BLAST of mRNA_L-elsbetiae_contig5012.13023.1 vs. uniprot
Match: D7FR22_ECTSI (Ammonium transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR22_ECTSI) HSP 1 Score: 127 bits (318), Expect = 1.890e-32 Identity = 62/100 (62.00%), Postives = 80/100 (80.00%), Query Frame = 2 Query: 26 DTAWILTGALMVFFMQTGFAMLEVGSVSIKNTKNILVKNIGDSAMGAIGWWLIGNGLAFGETSGGFLGTSGFALKSEDLYGSTSGEFSS-LGYAQWVFQW 322 D W++ GA++VFFMQTGFAMLEVGSVSIKNTKNIL+KNIGD+++GAI WWL+G G+AFG+TSG F+GT+ F LK L+ + G ++ YA W+FQW Sbjct: 30 DIFWLMFGAILVFFMQTGFAMLEVGSVSIKNTKNILIKNIGDASLGAICWWLLGYGVAFGDTSGKFIGTNNFDLKGA-LFEADDGTLTNGYSYASWLFQW 128
BLAST of mRNA_L-elsbetiae_contig5012.13023.1 vs. uniprot
Match: D7G243_ECTSI (Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G243_ECTSI) HSP 1 Score: 125 bits (315), Expect = 5.420e-32 Identity = 61/106 (57.55%), Postives = 78/106 (73.58%), Query Frame = 2 Query: 5 SSVALAVDTAWILTGALMVFFMQTGFAMLEVGSVSIKNTKNILVKNIGDSAMGAIGWWLIGNGLAFGETSGGFLGTSGFALKSEDLYGSTSGEFSSLGYAQWVFQW 322 +S+A +D W+L GA++VFFMQTGFAMLEVGSVSIKNTKNIL+KNIGD+++GAI WWL G G+A G+T G F+G++ FALK + YA W+FQW Sbjct: 27 ASLAGDMDIFWLLFGAILVFFMQTGFAMLEVGSVSIKNTKNILIKNIGDASLGAICWWLFGYGVALGDTKGRFIGSNAFALKGSHFEADDGTLTNGYSYAMWLFQW 132
BLAST of mRNA_L-elsbetiae_contig5012.13023.1 vs. uniprot
Match: A0A6H5JVJ2_9PHAE (Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVJ2_9PHAE) HSP 1 Score: 118 bits (295), Expect = 1.060e-28 Identity = 61/106 (57.55%), Postives = 78/106 (73.58%), Query Frame = 2 Query: 5 SSVALAVDTAWILTGALMVFFMQTGFAMLEVGSVSIKNTKNILVKNIGDSAMGAIGWWLIGNGLAFGETSGGFLGTSGFALKSEDLYGSTSGEFSSLGYAQWVFQW 322 S++A +D WI+ A++VFFMQ GFAMLEVGSVS KNTK +L+KNIGD+++GAI WWL+G GLAFG+ + GF+GTS FAL + TSG L A+WVF W Sbjct: 31 SALATDLDVVWIIVSAVLVFFMQVGFAMLEVGSVSSKNTKAVLLKNIGDASLGAICWWLVGFGLAFGDDAHGFIGTSVFALHGGESRFGTSG----LKEAEWVFDW 132
BLAST of mRNA_L-elsbetiae_contig5012.13023.1 vs. uniprot
Match: D7FIJ1_ECTSI (Ammonium transporter (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ1_ECTSI) HSP 1 Score: 103 bits (258), Expect = 1.770e-25 Identity = 49/99 (49.49%), Postives = 67/99 (67.68%), Query Frame = 2 Query: 26 DTAWILTGALMVFFMQTGFAMLEVGSVSIKNTKNILVKNIGDSAMGAIGWWLIGNGLAFGETSGGFLGTSGFALKSEDLYGSTSGEFSSLGYAQWVFQW 322 DTAWI+ ++VF MQ GF+MLEVGS+S KNTK +L+KN+ D+A+GAI WW +G+G A+G+ GGF+GT FA + Y + + A W FQW Sbjct: 28 DTAWIIWCGILVFLMQVGFSMLEVGSISPKNTKAVLIKNLTDAALGAICWWTLGHGFAYGKDVGGFIGTDSFAFSGKATY---QDDGRGVEIAHWFFQW 123
BLAST of mRNA_L-elsbetiae_contig5012.13023.1 vs. uniprot
Match: A0A6S9H5X5_HETAK (Ammonium transporter n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9H5X5_HETAK) HSP 1 Score: 106 bits (264), Expect = 9.780e-25 Identity = 53/100 (53.00%), Postives = 73/100 (73.00%), Query Frame = 2 Query: 23 VDTAWILTGALMVFFMQTGFAMLEVGSVSIKNTKNILVKNIGDSAMGAIGWWLIGNGLAFGETSGGFLGTSGFALKSEDLYGSTSGEFSSLGYAQWVFQW 322 ++ W+L GA++VFFMQTGFAMLEVGSV++KNTKN+LVKNI D A+G + +W IG GLAFG+++G +G+S FA E+ + YA+W+FQW Sbjct: 20 INVMWLLIGAVLVFFMQTGFAMLEVGSVALKNTKNVLVKNIFDCAIGCMMFWWIGYGLAFGDSAGRVVGSSLFAFSGEEWDDGSQ-------YARWLFQW 112
BLAST of mRNA_L-elsbetiae_contig5012.13023.1 vs. uniprot
Match: A0A835ZB85_9STRA (Ammonium transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB85_9STRA) HSP 1 Score: 103 bits (258), Expect = 7.950e-24 Identity = 56/112 (50.00%), Postives = 75/112 (66.96%), Query Frame = 2 Query: 14 ALAVDTAWILTGALMVFFMQTGFAMLEVGSVSIKNTKNILVKNIGDSAMGAIGWWLIGNGLAFGE-------TSGGFLGTSGFALKSEDLYGSTSGEFSSLGY--AQWVFQW 322 A+++DT W+L GA++VFFMQ GFA LEVG V KN KNILVKN+ D+++GAI W++ G G+AFG T+ GF+GT+G+ L D + S LGY A W+FQW Sbjct: 26 AVSMDTFWLLFGAILVFFMQAGFAFLEVGCVQSKNQKNILVKNVFDASIGAIAWYITGYGIAFGHDAYAEDGTTNGFIGTTGYFLAG-DHFRSDDATDEQLGYEWANWLFQW 136
BLAST of mRNA_L-elsbetiae_contig5012.13023.1 vs. uniprot
Match: D7G3S7_ECTSI (Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3S7_ECTSI) HSP 1 Score: 103 bits (257), Expect = 1.050e-23 Identity = 55/108 (50.93%), Postives = 76/108 (70.37%), Query Frame = 2 Query: 17 LAVDTAWILTGALMVFFMQTGFAMLEVGSVSIKNTKNILVKNIGDSAMGAIGWWLIGNGLAFG----ETSG--GFLGTSGFALKSEDLYGSTSGEFSSLGYAQWVFQW 322 ++V+T W++ GA++VFFMQTGFAMLEVG+V KN KNIL+KN+ D+++G I W+ G G+A G ETSG GF+GT GF L + GS G+ + +A W+FQW Sbjct: 24 ISVNTFWLMFGAVLVFFMQTGFAMLEVGAVQAKNAKNILIKNVFDASLGGIMWYTTGYGIALGSDSYETSGNNGFIGTDGFLLTTGAFRGS--GDDVGINWAGWLFQW 129 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5012.13023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5012.13023.1 >prot_L-elsbetiae_contig5012.13023.1 ID=prot_L-elsbetiae_contig5012.13023.1|Name=mRNA_L-elsbetiae_contig5012.13023.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp LVIRGLGGRHRMDSHRGAHGVLHADWVRDAGGRISVHQEHQEYPCQEHRGback to top mRNA from alignment at L-elsbetiae_contig5012:1530..4994+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5012.13023.1 ID=mRNA_L-elsbetiae_contig5012.13023.1|Name=mRNA_L-elsbetiae_contig5012.13023.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3465bp|location=Sequence derived from alignment at L-elsbetiae_contig5012:1530..4994+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5012:1530..4994+ >mRNA_L-elsbetiae_contig5012.13023.1 ID=mRNA_L-elsbetiae_contig5012.13023.1|Name=mRNA_L-elsbetiae_contig5012.13023.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig5012:1530..4994+ (Laminarionema elsbetiae ELsaHSoW15)back to top |