mRNA_L-elsbetiae_contig5007.13014.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5007.13014.1
Unique NamemRNA_L-elsbetiae_contig5007.13014.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5007.13014.1 vs. uniprot
Match: D7G2Y5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y5_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 2.680e-64
Identity = 106/148 (71.62%), Postives = 120/148 (81.08%), Query Frame = 1 
Query:    1 DFARDEKTGGCVYVDGYFVVEGEASFVRCENSGGGEAPPGRAGVMYVGPTGSVLFDDTVHMSEVSIIDNEGNDGGGIYNEGKVNIRGNAHFEDLRAEYGGAIYNAEGAEFRFRKGATAVFNDCDSFDGDGGAVFNLGFFKFAGPALIL 444
            DFA  +  GGCVYVDGYF VEG ASFV CENSGGGE+ PG  GVMYVG TGSVLF   V M +VSIID+EGN+GGGIYN GKVNI+GNA F++LRAE GGAI+N  GAEFRF+KGATA F DC SFDG GGAVFN G+FK +GPA ++
Sbjct:  145 DFASYQLIGGCVYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSVLFAGEVTMQDVSIIDDEGNNGGGIYNLGKVNIKGNAVFQNLRAEAGGAIFNGSGAEFRFKKGATADFIDCLSFDGIGGAVFNAGYFKLSGPAEVV 292
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BLAST of mRNA_L-elsbetiae_contig5007.13014.1 vs. uniprot
Match: A0A6H5JYQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ0_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 1.640e-60
Identity = 107/152 (70.39%), Postives = 120/152 (78.95%), Query Frame = 1 
Query:    1 DFARDEKTGGCV----YVDGYFVVEGEASFVRCENSGGGEAPPGRAGVMYVGPTGSVLFDDTVHMSEVSIIDNEGNDGGGIYNEGKVNIRGNAHFEDLRAEYGGAIYNAEGAEFRFRKGATAVFNDCDSFDGDGGAVFNLGFFKFAGPALIL 444
            DFA  E  GGCV    YVDGYF VEG ASFV CENSGGGE+ PG  GVMYVG TGSVLF   V M +VSIID+EGN+GGGIYN GKVNI+GNA F++LRAE GGAI+N  GAEFRF+KGATA F DC SFDG GGAVFN G+FK +GPA ++
Sbjct:  375 DFASYELIGGCVRAYTYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSVLFAGEVTMQDVSIIDDEGNNGGGIYNLGKVNIKGNALFQNLRAEAGGAIFNGSGAEFRFKKGATADFIDCLSFDGTGGAVFNAGYFKLSGPAEVV 526
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BLAST of mRNA_L-elsbetiae_contig5007.13014.1 vs. uniprot
Match: D7G1Q9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q9_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 8.280e-48
Identity = 82/149 (55.03%), Postives = 106/149 (71.14%), Query Frame = 1 
Query:    1 DFARDEKTGGCVYVDGYFVVEGEASFVRCENSGGGEAPPGRAGVMYVGPTGSVLFDDTVHMSEVSIIDNEGNDGGGIYNEGKVNIRGNAHFEDLRAEYGGAIYNAEGAEFRFRKGATAVFNDCDSFDGDGGAVFNLGFFKFAGPALILN 447
            DFA   ++GGCV+  GYF V+GEA+F  C+  G GE+PPG  G +YVG TGSVLF++ V ++E SI D+ G  GGGIYN GKVNI+G++ FE++ A  G AIYN EGA F FR GA A F D ++ D +G A+ NLGFFKF+GPA   +
Sbjct:  120 DFASFVRSGGCVWTAGYFRVDGEATFTGCDIIGAGESPPGPGGAVYVGETGSVLFNEGVTITETSITDDFGGKGGGIYNLGKVNIKGDSRFEEISASAGVAIYNGEGATFNFRNGAGAFFRDLNNRDSEGSALVNLGFFKFSGPAFFFD 268
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BLAST of mRNA_L-elsbetiae_contig5007.13014.1 vs. uniprot
Match: A0A6H5JCE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE5_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 3.590e-47
Identity = 82/149 (55.03%), Postives = 106/149 (71.14%), Query Frame = 1 
Query:    1 DFARDEKTGGCVYVDGYFVVEGEASFVRCENSGGGEAPPGRAGVMYVGPTGSVLFDDTVHMSEVSIIDNEGNDGGGIYNEGKVNIRGNAHFEDLRAEYGGAIYNAEGAEFRFRKGATAVFNDCDSFDGDGGAVFNLGFFKFAGPALILN 447
            DF+   ++GGCV+  GYF V+GEA+F  C+ SG GE+PPG  G +YVG TGSVLF+  V +++  I D+ G  GGGIYN GKVNI+G++ FED+ A  G AIYN EGA F FR GA A F D ++ D +G A+FN GFFKF+GPAL  +
Sbjct:  229 DFSSFVRSGGCVWTAGYFRVDGEATFTGCDISGAGESPPGPGGAVYVGETGSVLFNGGVTITDTHITDDFGGSGGGIYNLGKVNIKGDSRFEDISASSGVAIYNGEGATFNFRSGARAFFKDLNNRDSEGSALFNRGFFKFSGPALFFD 377
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BLAST of mRNA_L-elsbetiae_contig5007.13014.1 vs. uniprot
Match: D7FGT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT1_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 7.000e-43
Identity = 77/148 (52.03%), Postives = 102/148 (68.92%), Query Frame = 1 
Query:    1 DFARDEKTGGCVYVDGYFVVEGEASFVRCENSGGGEAPPGRAGVMYVGPTGSVLFDDTVHMSEVSIIDNEGNDGGGIYNEGKVNIRGNAHFEDLRAEYGGAIYNAEGAEFRFRKGATAVFNDCDSFDGDGGAVFNLGFFKFAGPALIL 444
            DFA   ++GGCV+  G F+V+GEA+F RC+ +G GE+PPG  G +YVG TGSV F+  V +SE  I D+ G  GGGIYN G+V I G++ FED+ A  G AIYN EGAEF F   A+A F D ++ D  G  + NLG+F+F+GPAL +
Sbjct:  148 DFASFVRSGGCVWTAGSFIVDGEATFTRCDITGAGESPPGPGGAIYVGATGSVSFNQGVAISETFITDDFGGQGGGIYNLGEVTIAGDSRFEDISASSGVAIYNGEGAEFYFTNDASAFFRDLNNRDSVGSGLTNLGYFEFSGPALFV 295
[Close]
BLAST of mRNA_L-elsbetiae_contig5007.13014.1 vs. uniprot
Match: D7G0Q4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Q4_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 1.570e-41
Identity = 76/148 (51.35%), Postives = 101/148 (68.24%), Query Frame = 1 
Query:    4 FARDEKTGGCVYVDGYFVVEGEASFVRCENSGGGEAPPGRAGVMYVGPTGSVLFDDTVHMSEVSIIDNEGNDGGGIYNEGKVNIRGNAHFEDLRAEYGGAIYNAEGAEFRFRKGATAVFNDCDSFDGDGGAVFNLGFFKFAGPALILN 447
            F RD   GGCV+  G+F V+GEA+F  C   G GE+PPG  G ++V  TGSVLF+  V +S+  I ++ G DGGGI+N GKVNI+G++ FE+L A  G AI+N E A F FR GA+A F D  + D +G A+ NLGFFKF+GP L ++
Sbjct:  152 FVRD---GGCVWTAGFFRVDGEATFTSCAIIGTGESPPGSGGAVFVDATGSVLFNQGVAISDTFITNDGGGDGGGIFNLGKVNIKGDSRFEELSARSGAAIFNGEDASFNFRNGASAFFRDLSNRDSEGSALVNLGFFKFSGPVLFVD 296
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5007.13014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G2Y5_ECTSI2.680e-6471.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYQ0_9PHAE1.640e-6070.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1Q9_ECTSI8.280e-4855.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCE5_9PHAE3.590e-4755.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGT1_ECTSI7.000e-4352.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0Q4_ECTSI1.570e-4151.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5007contigL-elsbetiae_contig5007:4618..7196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size448
Cds size447
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5007.13014.1prot_L-elsbetiae_contig5007.13014.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5007 4618..7196 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816504.508967-CDS-L-elsbetiae_contig5007:4617..48181622816504.508967-CDS-L-elsbetiae_contig5007:4617..4818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5007 4618..4818 -
1691683607.7439265-CDS-L-elsbetiae_contig5007:4617..48181691683607.7439265-CDS-L-elsbetiae_contig5007:4617..4818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5007 4618..4818 -
1622816504.5245652-CDS-L-elsbetiae_contig5007:6590..68071622816504.5245652-CDS-L-elsbetiae_contig5007:6590..6807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5007 6591..6807 -
1691683607.7569573-CDS-L-elsbetiae_contig5007:6590..68071691683607.7569573-CDS-L-elsbetiae_contig5007:6590..6807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5007 6591..6807 -
1622816504.5348086-CDS-L-elsbetiae_contig5007:7167..71961622816504.5348086-CDS-L-elsbetiae_contig5007:7167..7196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5007 7168..7196 -
1691683607.7674448-CDS-L-elsbetiae_contig5007:7167..71961691683607.7674448-CDS-L-elsbetiae_contig5007:7167..7196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5007 7168..7196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5007.13014.1

>prot_L-elsbetiae_contig5007.13014.1 ID=prot_L-elsbetiae_contig5007.13014.1|Name=mRNA_L-elsbetiae_contig5007.13014.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
DFARDEKTGGCVYVDGYFVVEGEASFVRCENSGGGEAPPGRAGVMYVGPT
GSVLFDDTVHMSEVSIIDNEGNDGGGIYNEGKVNIRGNAHFEDLRAEYGG
AIYNAEGAEFRFRKGATAVFNDCDSFDGDGGAVFNLGFFKFAGPALILN
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mRNA from alignment at L-elsbetiae_contig5007:4618..7196-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5007.13014.1 ID=mRNA_L-elsbetiae_contig5007.13014.1|Name=mRNA_L-elsbetiae_contig5007.13014.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2579bp|location=Sequence derived from alignment at L-elsbetiae_contig5007:4618..7196- (Laminarionema elsbetiae ELsaHSoW15)
GATTTTGCTCGGGACGAAAAAACCGGAGGGTGCGTCTGCTTTCAATAACC
CCCCACCCCCGATCGCTCTCCTGTAGGAGGAGGTTGTGCTGCGTGGTCTC
TCTCTGGAGGTGCTCCTGCCGTGGATGATGCCATGGTGCCACCGCTTGTT
TATTAGTGTGTAGCCTCCCAGACCTTGTGCAACGGTACCTGAAAAATGAT
ACCTATGTACAAGCATAGATCAGTAGATGCCTCGCTGGTGCTGCTACATC
TCATCATACACATAAAAAAAGGTTTCAAGCACAGGCATCTTTAAATATCT
ACAGAGTACATAAGTACAAAGCCGTGTTTTTTTTTGCATGAAGTTCTACC
CCGTATCTAATGTATTCGCGCCGCCGTCCCGCTGCACAGGTGCGTCTACG
TGGATGGATACTTCGTGGTCGAGGGGGAGGCTTCCTTCGTTCGCTGCGAG
AACTCGGGCGGCGGCGAGGCTCCCCCCGGCCGCGCAGGTGTCATGTACGT
GGGTCCAACGGGCTCGGTCCTCTTCGACGACACCGTGCACATGTCGGAGG
TTTCGATCATCGATAACGAGGGCAACGACGGCGGCGGGATCTACAACGAG
GGGAAGGTGAGCAGCATGAAAAGATCCTTCGACGGACGTGGGTGTTTTTT
GGGTAATTGTTTTTGTCTCTAACTTTTTGTTTTCTTCTGGGGGAGGGGGG
GGGTCCATCCCGGTGGACCTCGGACTGCTCGATTCCTCGGCAGTATGGGA
TCGCCCGACAGATGCCGGAGGTACTACTGTAGCATCGCTGCTTCGAAAAT
ATTGACATTACACGAACGCGTATCCGACGGCGGTTCGTCTTGCGTTCGCC
CCCCGTGTGGACAAATTGGCGCACGGAAAACATGAATGGTGTTTTACAGG
GATGCCTCTCAAAGCGCATGCAGCCCCAACCGATAAACACACTTTTCCGC
GACGTAGATTCACATATGTATCAACATAAGAGCCGTTCGCGTTATCGCTG
ACGGCACACATGTCTTCTCGCGCCAAGCATTTTAGCCTCGGCTGTCTGCA
TATGTTTTCCTGTCAAGCAGCACGACGTCGTGCAACATGTCGAAGCGCCG
TAGTCTCGTTAGCGCGGACGGTTAACCCTGGATGGATCAGCCGATCTTCT
CCGCGATAGCGGGAAAGGCGAGAAAAAAACACCCACAAGCGGTATTGTTC
ACGTGGTTTCGTGGCGATGTCTTCGAAAGCGCGCGTGCATCTGTCCGTGC
TTGCCTTGCACGTCTTTCCCCCAGCCCAGTAACAGAAAAAAAACGGCTTT
GGGATTGTGCTGAGAGTGAGGTGTGGGTTCAGGGGACTCAAGGGAGGATT
AATATTGTAATATAGGGATATCACAGGGATACTGCCCAAAAGTCCTTTTC
AAAAGTCTGTGAGGAAGTTCGTGACGGTTGGGCCATTTAGTGTGCGGACC
TCAGAAGAAGTGCCGCTTCGACCCCTCGACTGTGCACCCCCTGGTATCTC
ACGAAGATTTTGTGTATAGATGTGAGATGTAAAAATGGACGAGTCAAAAA
TCTTCGGGTGTGGAGCGCACGACGCACACAGCACACCACCAGCACACAAT
CTGACATCTCATCGGGCAGCATTACAAGCCACATGTGTATTCAGGAATGC
CGGCTGTGCAGCGGCGCAGCAAAGTGACAGGCGAGACGGCGGTGCGTGGC
GGGAAAAAAGTGTCCGAACTCTCATGCAAAAAAAAAACACATTCTAATTT
TTCGCGTTGTGGCCTCTCTCGCGACACTGCCGACAGTCGGCAGCGAGCTA
TAACAAACGCGCCAGGCGTCCTCTACAGGGTATGTTTATGAGACCCGTTG
GTCTATTACAGCGGAAACCTTTCCCCTGTCTCTGTTTGGAGGGGGTGAAA
AACCGCACATGCTTGAGCACATCACCGCAAACCGTCGGTTGACTTTTTCC
TGTTGATCACCACATCACCACAGATAGATCCACAAAACAGCTCACCCCAG
CACACCTTAGCACCAGGGGATGCTCTGAGGAGGGTTTATGGTGCTCTTTC
GCGGGCGTATGTCTCTCGGGTGGTGCGTTTTGCACCTCTGACGCGCTTGA
TGTACGCGCTGCAGGCTCGCAAGCTTTTTGCCTGCCACGTGCATCGAATA
TTAGGAATAAATTCAAAATGTTGAGAAAAATTCCTTGGACGAAAACACGT
TTCATGCGCGGCCTAATCTCCGAAACGTAGTTATTATGAACCGGAACCAC
GAAAAGGACTTATTATTGGGAAACGTAGTTATTATTTTTTGTGTGATAGC
CACCTAATGTGCCTGACGCTTGTCGGCGTAGTACTGAAACCGCCCGCCGC
CCCCGCCGCCTTAAACGGACCTTAACAGGTCAACATCAGGGGAAACGCCC
ACTTCGAAGACCTGCGCGCAGAGTACGGGGGCGCCATCTACAACGCGGAG
GGGGCGGAGTTCAGGTTCAGGAAGGGTGCCACCGCCGTGTTCAACGACTG
CGATTCCTTCGACGGCGACGGCGGCGCCGTGTTCAACCTGGGCTTTTTCA
AGTTTGCCGGGCCGGCCCTTATCCTCAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5007:4618..7196-

>mRNA_L-elsbetiae_contig5007.13014.1 ID=mRNA_L-elsbetiae_contig5007.13014.1|Name=mRNA_L-elsbetiae_contig5007.13014.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig5007:4618..7196- (Laminarionema elsbetiae ELsaHSoW15)
GATTTTGCTCGGGACGAAAAAACCGGAGGGATTTTGCTCGGGACGAAAAA
ACCGGAGGGTGCGTCTACGTGGATGGATACTTCGTGGTCGAGGGGGAGGC
TTCCTTCGTTCGCTGCGAGAACTCGGGCGGCGGCGAGGCTCCCCCCGGCC
GCGCAGGTGTCATGTACGTGGGTCCAACGGGCTCGGTCCTCTTCGACGAC
ACCGTGCACATGTCGGAGGTTTCGATCATCGATAACGAGGGCAACGACGG
CGGCGGGATCTACAACGAGGGGAAGGTGCGTCTACGTGGATGGATACTTC
GTGGTCGAGGGGGAGGCTTCCTTCGTTCGCTGCGAGAACTCGGGCGGCGG
CGAGGCTCCCCCCGGCCGCGCAGGTGTCATGTACGTGGGTCCAACGGGCT
CGGTCCTCTTCGACGACACCGTGCACATGTCGGAGGTTTCGATCATCGAT
AACGAGGGCAACGACGGCGGCGGGATCTACAACGAGGGGAAGGTCAACAT
CAGGGGAAACGCCCACTTCGAAGACCTGCGCGCAGAGTACGGGGGCGCCA
TCTACAACGCGGAGGGGGCGGAGTTCAGGTTCAGGAAGGGTGCCACCGCC
GTGTTCAACGACTGCGATTCCTTCGACGGCGACGGCGGCGCCGTGTTCAA
CCTGGGCTTTTTCAAGTTTGCCGGGCCGGCCCTTATCCTCAACGTCAACA
TCAGGGGAAACGCCCACTTCGAAGACCTGCGCGCAGAGTACGGGGGCGCC
ATCTACAACGCGGAGGGGGCGGAGTTCAGGTTCAGGAAGGGTGCCACCGC
CGTGTTCAACGACTGCGATTCCTTCGACGGCGACGGCGGCGCCGTGTTCA
ACCTGGGCTTTTTCAAGTTTGCCGGGCCGGCCCTTATCCTCAAC
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