mRNA_L-elsbetiae_contig4973.12955.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4973.12955.1
Unique NamemRNA_L-elsbetiae_contig4973.12955.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4973.12955.1 vs. uniprot
Match: D8LPK2_ECTSI (EsV-1-183 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPK2_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 4.600e-49
Identity = 80/129 (62.02%), Postives = 94/129 (72.87%), Query Frame = 1 
Query:    1 QMFDILRTCIIGESFRACGCSYHPEDALETRHASEFDDN-GADATLRCFESPEHFLESLCSSNAGRVYDTIREMERIWVNFSGEG---ELTPAMELLWDLGNSEASQYVRDNYGEEAAFTFLERGGNVF 375
            +MF++LRTCIIGESFRACG  YHPEDALE  HASEF DN   D     F SPEHFLE+LCSSNAGRVYDTIREM+ +W + S E         M+LLWDLGN+EA QY+ DN+G+  A  FLE G ++F
Sbjct:    5 EMFEVLRTCIIGESFRACGVGYHPEDALEAYHASEFFDNVDEDDITGSFHSPEHFLENLCSSNAGRVYDTIREMDDLWESGSPESLSRSSAETMKLLWDLGNAEALQYIDDNFGQPVAQEFLEYGSSLF 133
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BLAST of mRNA_L-elsbetiae_contig4973.12955.1 vs. uniprot
Match: Q8QNA4_ESV1K (EsV-1-183 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNA4_ESV1K)

HSP 1 Score: 158 bits (400), Expect = 1.390e-47
Identity = 77/129 (59.69%), Postives = 94/129 (72.87%), Query Frame = 1 
Query:    1 QMFDILRTCIIGESFRACGCSYHPEDALETRHASEFDDN-GADATLRCFESPEHFLESLCSSNAGRVYDTIREMERIWVNFSGEG---ELTPAMELLWDLGNSEASQYVRDNYGEEAAFTFLERGGNVF 375
            +MF++L+TCIIGESFRACG  YHPEDALE  HAS+F DN   D     F SPEHFLE+LCSSNAGRVYDTIREM+ +W + S E         M+LLWDLGN+EA QY+ DN+G++ A  FL+ G  +F
Sbjct:    5 EMFEVLKTCIIGESFRACGVGYHPEDALEAYHASDFFDNVDEDDITGSFHSPEHFLENLCSSNAGRVYDTIREMDNLWKSGSSESLSKSSAETMKLLWDLGNAEALQYIDDNFGQQMAQGFLDYGTLLF 133
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4973.12955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPK2_ECTSI4.600e-4962.02EsV-1-183 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QNA4_ESV1K1.390e-4759.69EsV-1-183 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4973contigL-elsbetiae_contig4973:3331..3720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-183
Ec32 orthologEc-06_005090.1
Exons1
Model size390
Cds size387
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816497.8338215-CDS-L-elsbetiae_contig4973:3330..37171622816497.8338215-CDS-L-elsbetiae_contig4973:3330..3717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4973 3331..3717 -
1691683602.8495352-CDS-L-elsbetiae_contig4973:3330..37171691683602.8495352-CDS-L-elsbetiae_contig4973:3330..3717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4973 3331..3717 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816497.8468974-UTR-L-elsbetiae_contig4973:3717..37201622816497.8468974-UTR-L-elsbetiae_contig4973:3717..3720Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4973 3718..3720 -
1691683602.860933-UTR-L-elsbetiae_contig4973:3717..37201691683602.860933-UTR-L-elsbetiae_contig4973:3717..3720Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4973 3718..3720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4973.12955.1prot_L-elsbetiae_contig4973.12955.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4973 3331..3717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4973.12955.1

>prot_L-elsbetiae_contig4973.12955.1 ID=prot_L-elsbetiae_contig4973.12955.1|Name=mRNA_L-elsbetiae_contig4973.12955.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MFDILRTCIIGESFRACGCSYHPEDALETRHASEFDDNGADATLRCFESP
EHFLESLCSSNAGRVYDTIREMERIWVNFSGEGELTPAMELLWDLGNSEA
SQYVRDNYGEEAAFTFLERGGNVFAPNM*
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mRNA from alignment at L-elsbetiae_contig4973:3331..3720-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4973.12955.1 ID=mRNA_L-elsbetiae_contig4973.12955.1|Name=mRNA_L-elsbetiae_contig4973.12955.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig4973:3331..3720- (Laminarionema elsbetiae ELsaHSoW15)
CAGATGTTTGACATTTTGCGCACGTGCATAATCGGCGAGAGCTTCCGCGC
GTGCGGGTGTAGCTACCACCCGGAGGACGCGCTGGAGACTCGCCACGCTT
CAGAGTTTGACGACAACGGCGCGGACGCGACCCTACGTTGTTTCGAAAGC
CCGGAGCACTTCTTGGAGTCGCTGTGCTCTTCGAATGCCGGCCGCGTCTA
TGATACAATTCGCGAGATGGAGCGCATTTGGGTGAATTTTTCTGGAGAAG
GCGAATTGACCCCGGCCATGGAGCTTCTGTGGGACTTGGGCAACTCGGAG
GCTTCGCAGTACGTGCGAGACAACTACGGCGAGGAGGCTGCATTCACGTT
TTTGGAACGCGGGGGTAACGTGTTCGCGCCAAATATGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4973:3331..3720-

>mRNA_L-elsbetiae_contig4973.12955.1 ID=mRNA_L-elsbetiae_contig4973.12955.1|Name=mRNA_L-elsbetiae_contig4973.12955.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig4973:3331..3720- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTGACATTTTGCGCACGTGCATAATCGGCGAGAGCTTCCGCGCGTG
CGGGTGTAGCTACCACCCGGAGGACGCGCTGGAGACTCGCCACGCTTCAG
AGTTTGACGACAACGGCGCGGACGCGACCCTACGTTGTTTCGAAAGCCCG
GAGCACTTCTTGGAGTCGCTGTGCTCTTCGAATGCCGGCCGCGTCTATGA
TACAATTCGCGAGATGGAGCGCATTTGGGTGAATTTTTCTGGAGAAGGCG
AATTGACCCCGGCCATGGAGCTTCTGTGGGACTTGGGCAACTCGGAGGCT
TCGCAGTACGTGCGAGACAACTACGGCGAGGAGGCTGCATTCACGTTTTT
GGAACGCGGGGGTAACGTGTTCGCGCCAAATATGTAAATGTTTGACATTT
TGCGCACGTGCATAATCGGCGAGAGCTTCCGCGCGTGCGGGTGTAGCTAC
CACCCGGAGGACGCGCTGGAGACTCGCCACGCTTCAGAGTTTGACGACAA
CGGCGCGGACGCGACCCTACGTTGTTTCGAAAGCCCGGAGCACTTCTTGG
AGTCGCTGTGCTCTTCGAATGCCGGCCGCGTCTATGATACAATTCGCGAG
ATGGAGCGCATTTGGGTGAATTTTTCTGGAGAAGGCGAATTGACCCCGGC
CATGGAGCTTCTGTGGGACTTGGGCAACTCGGAGGCTTCGCAGTACGTGC
GAGACAACTACGGCGAGGAGGCTGCATTCACGTTTTTGGAACGCGGGGGT
AACGTGTTCGCGCCAAATATGTAA
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