prot_L-elsbetiae_contig496.12932.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig496.12932.1
Unique Nameprot_L-elsbetiae_contig496.12932.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length113
Homology
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BLAST of mRNA_L-elsbetiae_contig496.12932.1 vs. uniprot
Match: D7FHY8_ECTSI (Trithorax 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY8_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 5.880e-19
Identity = 52/82 (63.41%), Postives = 58/82 (70.73%), Query Frame = 0 
Query:   14 KTSRFIGVYWSGMTGAVGGGGRKDLWTAKIRRRSYQSRATIGSYFSEKEAAEAYDAEARMAFNGTNPPLNFPQNGSREEDEP 95
            K S++ GVYWSG T    GG R  +WTAKIRRRS +  A IGSY SEKEAA AYDAEA+  F  T+P LNFP NGS E DEP
Sbjct:  425 KESKYTGVYWSGTTRI--GGVRTAVWTAKIRRRSGRREAIIGSYHSEKEAAGAYDAEAKRVFGDTHPALNFP-NGSWE-DEP 502
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BLAST of mRNA_L-elsbetiae_contig496.12932.1 vs. uniprot
Match: A0A6H5JJY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY6_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.090e-18
Identity = 52/82 (63.41%), Postives = 58/82 (70.73%), Query Frame = 0 
Query:   14 KTSRFIGVYWSGMTGAVGGGGRKDLWTAKIRRRSYQSRATIGSYFSEKEAAEAYDAEARMAFNGTNPPLNFPQNGSREEDEP 95
            K S++ GVYWSG T    GG R  +WTAKIRRRS +  A IGSY SEKEAA AYDAEA+  F  T+P LNFP NGS E DEP
Sbjct:  169 KESKYTGVYWSGTTRI--GGVRTVVWTAKIRRRSGRREAIIGSYHSEKEAAGAYDAEAKRVFGDTHPVLNFP-NGSWE-DEP 246
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig496.12932.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHY8_ECTSI5.880e-1963.41Trithorax 3 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JJY6_9PHAE1.090e-1863.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 33..91
e-value: 0.0073
score: 9.8
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 17..85
score: 10.02
IPR036955AP2/ERF domain superfamilyGENE3D3.30.730.10coord: 34..87
e-value: 3.5E-8
score: 35.1
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 37..86

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig496contigL-elsbetiae_contig496:30715..32906 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig496.12932.1mRNA_L-elsbetiae_contig496.12932.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig496 30713..32906 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig496.12932.1 ID=prot_L-elsbetiae_contig496.12932.1|Name=mRNA_L-elsbetiae_contig496.12932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
GGRGAARTTEDRTKTSRFIGVYWSGMTGAVGGGGRKDLWTAKIRRRSYQS
RATIGSYFSEKEAAEAYDAEARMAFNGTNPPLNFPQNGSREEDEPGAGGA
GVPVGATTPCPEE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001471AP2/ERF_dom
IPR036955AP2/ERF_dom_sf
IPR016177DNA-bd_dom_sf