mRNA_L-elsbetiae_contig496.12932.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig496.12932.1
Unique NamemRNA_L-elsbetiae_contig496.12932.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig496.12932.1 vs. uniprot
Match: D7FHY8_ECTSI (Trithorax 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY8_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 5.880e-19
Identity = 52/82 (63.41%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:   40 KTSRFIGVYWSGMTGAVGGGGRKDLWTAKIRRRSYQSRATIGSYFSEKEAAEAYDAEARMAFNGTNPPLNFPQNGSREEDEP 285
            K S++ GVYWSG T    GG R  +WTAKIRRRS +  A IGSY SEKEAA AYDAEA+  F  T+P LNFP NGS E DEP
Sbjct:  425 KESKYTGVYWSGTTRI--GGVRTAVWTAKIRRRSGRREAIIGSYHSEKEAAGAYDAEAKRVFGDTHPALNFP-NGSWE-DEP 502
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BLAST of mRNA_L-elsbetiae_contig496.12932.1 vs. uniprot
Match: A0A6H5JJY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY6_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.090e-18
Identity = 52/82 (63.41%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:   40 KTSRFIGVYWSGMTGAVGGGGRKDLWTAKIRRRSYQSRATIGSYFSEKEAAEAYDAEARMAFNGTNPPLNFPQNGSREEDEP 285
            K S++ GVYWSG T    GG R  +WTAKIRRRS +  A IGSY SEKEAA AYDAEA+  F  T+P LNFP NGS E DEP
Sbjct:  169 KESKYTGVYWSGTTRI--GGVRTVVWTAKIRRRSGRREAIIGSYHSEKEAAGAYDAEAKRVFGDTHPVLNFP-NGSWE-DEP 246
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig496.12932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHY8_ECTSI5.880e-1963.41Trithorax 3 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JJY6_9PHAE1.090e-1863.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig496contigL-elsbetiae_contig496:30713..32906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue2.4e-16
Seed eggNOG ortholog2880.D7FHY8
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K02606,ko:K09186,ko:K09188,ko:K14964,ko:K17586,ko:K22197
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04110,ko04111,ko04113,ko04934,ko05202,ko05225,map00310,map04110,map04111,map04113,map04934,map05202,map05225
KEGG ModuleM00284
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA processing
EggNOG OGsCOG2940@1,COG5141@1,KOG0825@1,KOG0825@2759,KOG0955@2759,KOG4443@2759
EC2.1.1.43
COG Functional cat.LO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03000,ko03032,ko03036
Exons4
Model size343
Cds size339
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig496.12932.1prot_L-elsbetiae_contig496.12932.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig496 30715..32906 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816495.9288778-CDS-L-elsbetiae_contig496:30714..307981622816495.9288778-CDS-L-elsbetiae_contig496:30714..30798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 30715..30798 -
1691683601.468688-CDS-L-elsbetiae_contig496:30714..307981691683601.468688-CDS-L-elsbetiae_contig496:30714..30798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 30715..30798 -
1622816495.939868-CDS-L-elsbetiae_contig496:31300..313721622816495.939868-CDS-L-elsbetiae_contig496:31300..31372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 31301..31372 -
1691683601.480523-CDS-L-elsbetiae_contig496:31300..313721691683601.480523-CDS-L-elsbetiae_contig496:31300..31372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 31301..31372 -
1622816495.949998-CDS-L-elsbetiae_contig496:31903..320361622816495.949998-CDS-L-elsbetiae_contig496:31903..32036Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 31904..32036 -
1691683601.4899304-CDS-L-elsbetiae_contig496:31903..320361691683601.4899304-CDS-L-elsbetiae_contig496:31903..32036Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 31904..32036 -
1622816495.9615874-CDS-L-elsbetiae_contig496:32856..329061622816495.9615874-CDS-L-elsbetiae_contig496:32856..32906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 32857..32906 -
1691683601.5027454-CDS-L-elsbetiae_contig496:32856..329061691683601.5027454-CDS-L-elsbetiae_contig496:32856..32906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 32857..32906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig496.12932.1

>prot_L-elsbetiae_contig496.12932.1 ID=prot_L-elsbetiae_contig496.12932.1|Name=mRNA_L-elsbetiae_contig496.12932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
GGRGAARTTEDRTKTSRFIGVYWSGMTGAVGGGGRKDLWTAKIRRRSYQS
RATIGSYFSEKEAAEAYDAEARMAFNGTNPPLNFPQNGSREEDEPGAGGA
GVPVGATTPCPEE
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mRNA from alignment at L-elsbetiae_contig496:30713..32906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig496.12932.1 ID=mRNA_L-elsbetiae_contig496.12932.1|Name=mRNA_L-elsbetiae_contig496.12932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2194bp|location=Sequence derived from alignment at L-elsbetiae_contig496:30713..32906- (Laminarionema elsbetiae ELsaHSoW15)
GGTGGTAGGGGGGCGGCGAGGACCACCGAGGACAGAACCAAGACTTCCAG
GCGAGTCAGACAAGAGGGCAGCGCGGAGCGTCTAAAATATGGTGTAGGGT
TTAGGAGCACTTTATAGTGTGTACAGCAGGTGCCCTCAAGCGTAGTTCCA
ATCCTCTCGCCGCCGAGGTTTAATACTTATTGCTGTGTGAGAGTTGCTAC
ATTGTGCCTGTACGAACTGTTACGCAAAGCTTTTCGCTTCCGTTGGCCGC
CTTGTACTAGGAAAAGAAAGGCGCGAGTGCGTGTTTTTTTATTTGCATTT
TTCGATTGTTGGGGAGACATACCGAGATAATAGGTGCTTGCCTACCTTTG
CGTGGTGTTTGTTACGCGTGTTTTCCTTTTGTATTTTATTTGTTCGCCGC
TTTTGGCTGTGGCGTGCAAGCTTTTCCTCTTGTGACCCAACCACACAAAA
TGTAAATTGAGCACAAGCGCCGAAGCATGCTTCAACGGGGAGGGGTCGGG
TTGGTTCTCGGATCCACTCGCGACCCCCCTGCCTCCCCCCACCACGCGAT
TCGTGGTACCCCTCACGGTGGTTCGCGCTTGGTCTGCCTCCCTGCCTGCC
TGCGTGCCCGCCTGCTTGCTTGCCTTCCTACCTGATCAAAAAGCGAAAAA
ATGACAAGACATAAGGACGCGCGGCGTCCCTCGCGGGGCTTTGCTGACGT
CATGTCATGTTACGGCAAGAGCCTCTCATCTGGTTTGATTGCCGCAGCCC
GCCCTCCCCGTGGAGAGATGCGTGCTGAATACACGCCCCCATGCATGCGA
CCACTAACACCCTCCCCGCTCTGACCCTACCTTTGTCAACTGGACTCACT
CTCGCTCACGATCGCGGCAGGTTTATCGGCGTTTACTGGAGCGGCATGAC
TGGGGCCGTCGGCGGCGGTGGTCGCAAAGATCTCTGGACGGCAAAGATCC
GCAGGCGGTCCTACCAAAGCAGGGCAACCATTGGCTCATACTTTTCGGAG
AAGGTGAGGAGAGCGTTCTTTCCCCGCATACGTGCACGACGATCGCTCAA
TCTATCTAAAATACCGGGTGTACCACGGCGATAAATTCCCGTGTACCACG
ACGATGCCGGCTGCTGAATACCGCCGCAGCCTATATCCCGCTTCTTGCTT
ACAAGAGAGACGGCGCAGCAATAGTCAGTGGTGCGGTACGCGCTTGGTTT
GTCTGTGAAGCTTGGGCTTTACATAGCCGGGCGTGTTTTTTGCTCGAGCT
GGAGAGCTTTCGTGCCTGCCAAGCTTTCTTCTGCCTCGAGCCCGTGCCAC
AGGAGCAGCTTTTTTCTTGGCTGCCCCTTTCGGGTATTATCGCGGTCACT
CCGTGGGGCTTTTCACGCTTTGTTTTGTTTTTCCATTTATTTTTTGTGTC
CCCAAACAAGAATAAACACAAGAACTAGCCTGGTTCTGCCTCGCTGCCGT
CTGTGCGATACCTGTTTCCAGTTTCCAAACGTCCACCATGCGTTTTAATT
AACTCTTGGACTGGTCCCGTCTTGCTGTTCGCAGGAGGCAGCTGAGGCTT
ACGACGCGGAGGCCAGAATGGCGTTTAACGGAACTAATCCTCCGCTAAAC
TTTCCGGTGAGGATTTATCGGGAGTTTCGGGTGGACTTGCTGGGGAAAGA
GTTGCAGCTGTTTCGCGCTACTCCTGGACATAGATTGTCGCATCATGTCC
CGACCTGCATTGCATAGCAATCAATGCCCCTTTGATTGTTATTAGAAGGG
ACGTTTCAGTTCGCCCATCCCGGTCTATATGGGCACGACGCATTTTTTGC
TGTCGTAGTATCGAGGTGTCGAGACCCCTCCCTCTGAAGTCTGGTTAAGT
GGCCGGACGCCTCCTAGTTCACCCGCTGGTCCTTTGGGCCCTGTGTCGAT
TTTCAACGTATGTATTTTGCGGGCAGCAGACTCAACAATATCTAGAAATG
AAAGCTGAGCTGCGGGATTTTAAATCGTGGACAGCTAACTGCTCTGCGCG
CGCGAGCGCGGGTGTCGAGCCCTTTTGCCGAAATCGAACGCGAATACTCT
CAACTGGCGACACCTTTTTTTTTACCCTTTCTGCGCTTTTTCGTCTGGCC
GTGAGAAGCAGAACGGGAGCCGGGAGGAGGACGAGCCGGGGGCCGGCGGC
GCGGGTGTGCCGGTGGGCGCGACGACGCCTTGCCCCGAGGAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig496:30713..32906-

>mRNA_L-elsbetiae_contig496.12932.1 ID=mRNA_L-elsbetiae_contig496.12932.1|Name=mRNA_L-elsbetiae_contig496.12932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig496:30713..32906- (Laminarionema elsbetiae ELsaHSoW15)
GGTGGTAGGGGGGCGGCGAGGACCACCGAGGACAGAACCAAGACTTCCAG
GGTGGTAGGGGGGCGGCGAGGACCACCGAGGACAGAACCAAGACTTCCAG
GTTTATCGGCGTTTACTGGAGCGGCATGACTGGGGCCGTCGGCGGCGGTG
GTCGCAAAGATCTCTGGACGGCAAAGATCCGCAGGCGGTCCTACCAAAGC
AGGGCAACCATTGGCTCATACTTTTCGGAGAAGGTTTATCGGCGTTTACT
GGAGCGGCATGACTGGGGCCGTCGGCGGCGGTGGTCGCAAAGATCTCTGG
ACGGCAAAGATCCGCAGGCGGTCCTACCAAAGCAGGGCAACCATTGGCTC
ATACTTTTCGGAGAAGGAGGCAGCTGAGGCTTACGACGCGGAGGCCAGAA
TGGCGTTTAACGGAACTAATCCTCCGCTAAACTTTCCGGAGGCAGCTGAG
GCTTACGACGCGGAGGCCAGAATGGCGTTTAACGGAACTAATCCTCCGCT
AAACTTTCCGCAGAACGGGAGCCGGGAGGAGGACGAGCCGGGGGCCGGCG
GCGCGGGTGTGCCGGTGGGCGCGACGACGCCTTGCCCCGAGGAGCAGAAC
GGGAGCCGGGAGGAGGACGAGCCGGGGGCCGGCGGCGCGGGTGTGCCGGT
GGGCGCGACGACGCCTTGCCCCGAGGAG
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