mRNA_L-elsbetiae_contig4928.12885.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4928.12885.1
Unique NamemRNA_L-elsbetiae_contig4928.12885.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4928.12885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4928contigL-elsbetiae_contig4928:4137..4626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue9.4e-09
Seed eggNOG ortholog2880.D8LNF8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size490
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4928.12885.1prot_L-elsbetiae_contig4928.12885.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4928 4204..4584 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816490.8831115-UTR-L-elsbetiae_contig4928:4136..42031622816490.8831115-UTR-L-elsbetiae_contig4928:4136..4203Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4928 4137..4203 +
1691683597.5736506-UTR-L-elsbetiae_contig4928:4136..42031691683597.5736506-UTR-L-elsbetiae_contig4928:4136..4203Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4928 4137..4203 +
1622816490.9056604-UTR-L-elsbetiae_contig4928:4584..46261622816490.9056604-UTR-L-elsbetiae_contig4928:4584..4626Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4928 4585..4626 +
1691683597.5992076-UTR-L-elsbetiae_contig4928:4584..46261691683597.5992076-UTR-L-elsbetiae_contig4928:4584..4626Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4928 4585..4626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816490.8937497-CDS-L-elsbetiae_contig4928:4203..45841622816490.8937497-CDS-L-elsbetiae_contig4928:4203..4584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4928 4204..4584 +
1691683597.5872774-CDS-L-elsbetiae_contig4928:4203..45841691683597.5872774-CDS-L-elsbetiae_contig4928:4203..4584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4928 4204..4584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4928.12885.1

>prot_L-elsbetiae_contig4928.12885.1 ID=prot_L-elsbetiae_contig4928.12885.1|Name=mRNA_L-elsbetiae_contig4928.12885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MPSTTLPLQQRPREPLNELHQAASDGSSASTILSCGSFDTDQRSRRLDPP
HVLPPRSSFSRAVGILLDRRASVPVTTGCDFSALHLAVTVTINLVKAGAD
LEARTSDGAIPLHLAARVIRDYVNTG*
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mRNA from alignment at L-elsbetiae_contig4928:4137..4626+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4928.12885.1 ID=mRNA_L-elsbetiae_contig4928.12885.1|Name=mRNA_L-elsbetiae_contig4928.12885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=490bp|location=Sequence derived from alignment at L-elsbetiae_contig4928:4137..4626+ (Laminarionema elsbetiae ELsaHSoW15)
CTGTGGCTTGTTGCGTGTATTCCTCAATCGCTAGACGATCCCCTGCACTG
TGCGCCCTCCAGACGCGATGCCTTCAACGACTCTACCCCTACAGCAGCGG
CCTCGTGAGCCTTTGAATGAACTGCATCAGGCCGCCAGCGATGGTTCCTC
GGCGAGCACGATTCTCTCGTGCGGATCGTTCGACACAGACCAACGATCCC
GACGGCTGGACCCGCCTCATGTTTTGCCACCCAGAAGTTCGTTTTCCCGT
GCTGTCGGGATCTTGCTGGACAGGAGAGCTAGCGTGCCGGTAACGACGGG
TTGCGACTTTTCTGCTCTACACCTCGCCGTGACTGTGACCATAAACCTTG
TGAAGGCTGGCGCGGACCTGGAAGCGAGGACCTCCGACGGTGCCATACCG
CTTCATCTGGCTGCGCGAGTAATCAGAGATTATGTCAACACTGGTTGAAG
CAGGCGAGAACACCGACTGCCGTTGGAAGAATGGGGGCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4928:4137..4626+

>mRNA_L-elsbetiae_contig4928.12885.1 ID=mRNA_L-elsbetiae_contig4928.12885.1|Name=mRNA_L-elsbetiae_contig4928.12885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig4928:4137..4626+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTTCAACGACTCTACCCCTACAGCAGCGGCCTCGTGAGCCTTTGAA
TGAACTGCATCAGGCCGCCAGCGATGGTTCCTCGGCGAGCACGATTCTCT
CGTGCGGATCGTTCGACACAGACCAACGATCCCGACGGCTGGACCCGCCT
CATGTTTTGCCACCCAGAAGTTCGTTTTCCCGTGCTGTCGGGATCTTGCT
GGACAGGAGAGCTAGCGTGCCGGTAACGACGGGTTGCGACTTTTCTGCTC
TACACCTCGCCGTGACTGTGACCATAAACCTTGTGAAGGCTGGCGCGGAC
CTGGAAGCGAGGACCTCCGACGGTGCCATACCGCTTCATCTGGCTGCGCG
AGTAATCAGAGATTATGTCAACACTGGTTGAATGCCTTCAACGACTCTAC
CCCTACAGCAGCGGCCTCGTGAGCCTTTGAATGAACTGCATCAGGCCGCC
AGCGATGGTTCCTCGGCGAGCACGATTCTCTCGTGCGGATCGTTCGACAC
AGACCAACGATCCCGACGGCTGGACCCGCCTCATGTTTTGCCACCCAGAA
GTTCGTTTTCCCGTGCTGTCGGGATCTTGCTGGACAGGAGAGCTAGCGTG
CCGGTAACGACGGGTTGCGACTTTTCTGCTCTACACCTCGCCGTGACTGT
GACCATAAACCTTGTGAAGGCTGGCGCGGACCTGGAAGCGAGGACCTCCG
ACGGTGCCATACCGCTTCATCTGGCTGCGCGAGTAATCAGAGATTATGTC
AACACTGGTTGA
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