mRNA_L-elsbetiae_contig4906.12841.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4906.12841.1
Unique NamemRNA_L-elsbetiae_contig4906.12841.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4906.12841.1 vs. uniprot
Match: A0A6H5JAV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAV0_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 5.270e-42
Identity = 94/202 (46.53%), Postives = 117/202 (57.92%), Query Frame = 2 
Query:    2 AVEERELSKAWVTLWG*RLHLDRSTKTWVDVHGGDDAVMRSAARRVVFLEGHPEQVCREQAAMMKAFVRWNGAAVTRAREESNTELAAAWQMLHASEIGLPPTAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTPSASP----LSRAHDAYLRYVEAKTSAALAADPTSPTATAARGLEIRRIGRMADAWMWKNRRWVCA 595
            AV+ERELSKAWV LWG R  LD  +KTWVD     DA +R+AARRVVFLE HPEQ C+EQ AMMKAF+R NGA V +A EE++ ELAAAW+ +H +   +                                  TTP AS       RA+ AY ++++ + SAAL A+   PT  A+  L++RRIGRM DAW   N R VCA
Sbjct:  596 AVQERELSKAWVALWGHRRRLDPVSKTWVDADDSGDAAVRAAARRVVFLEAHPEQACQEQGAMMKAFIRRNGAVVLKAVEEADAELAAAWERMHDNRDDV----------------------------DAAHSSTTPPASTSPAAFDRAYTAYRKHIDTRASAALVANSLPPTCAASATLQLRRIGRMVDAWESANHRRVCA 769
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BLAST of mRNA_L-elsbetiae_contig4906.12841.1 vs. uniprot
Match: D7G6K5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K5_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 1.950e-41
Identity = 95/202 (47.03%), Postives = 120/202 (59.41%), Query Frame = 2 
Query:    2 AVEERELSKAWVTLWG*RLHLDRSTKTWVDVHGGDDAVMRSAARRVVFLEGHPEQVCREQAAMMKAFVRWNGAAVTRAREESNTELAAAWQMLHASEIGLPPTAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTPSASP----LSRAHDAYLRYVEAKTSAALAADPTSPTATAARGLEIRRIGRMADAWMWKNRRWVCA 595
            AV+ERELSKAWV LW  R  LD  +KTWVD     DA +R+AARRVVFLE HPEQ C+EQ AMMKAFVR NGA V +A EE++ ELAAAW+ +H +   +  +  +                            TTP AS       RA+ AY ++++ + SAAL A+   PT+ A+  L++RRIGRMADAW   N R VCA
Sbjct:  840 AVQERELSKAWVALWSHRRRLDPVSKTWVDADDPGDAAVRAAARRVVFLEAHPEQACQEQGAMMKAFVRRNGAEVLKAVEEADAELAAAWERMHDNHDDVDASHSS----------------------------TTPPASTSPSTFDRAYAAYRKHIDTRASAALVANSLPPTSVASATLQLRRIGRMADAWESANHRRVCA 1013
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4906.12841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAV0_9PHAE5.270e-4246.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6K5_ECTSI1.950e-4147.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4906contigL-elsbetiae_contig4906:10083..10915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue7.6e-24
Seed eggNOG ortholog2880.D7G6K5
Hectar predicted targeting categoryother localisation
EggNOG OGs2EGD3@1,2SAJF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size595
Cds size480
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4906.12841.1prot_L-elsbetiae_contig4906.12841.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4906 10198..10915 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816486.6283033-UTR-L-elsbetiae_contig4906:10082..101971622816486.6283033-UTR-L-elsbetiae_contig4906:10082..10197Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4906 10083..10197 +
1691683594.7110922-UTR-L-elsbetiae_contig4906:10082..101971691683594.7110922-UTR-L-elsbetiae_contig4906:10082..10197Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4906 10083..10197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816486.639849-CDS-L-elsbetiae_contig4906:10197..102481622816486.639849-CDS-L-elsbetiae_contig4906:10197..10248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4906 10198..10248 +
1691683594.7238367-CDS-L-elsbetiae_contig4906:10197..102481691683594.7238367-CDS-L-elsbetiae_contig4906:10197..10248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4906 10198..10248 +
1622816486.654284-CDS-L-elsbetiae_contig4906:10486..109151622816486.654284-CDS-L-elsbetiae_contig4906:10486..10915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4906 10487..10915 +
1691683594.7323134-CDS-L-elsbetiae_contig4906:10486..109151691683594.7323134-CDS-L-elsbetiae_contig4906:10486..10915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4906 10487..10915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4906.12841.1

>prot_L-elsbetiae_contig4906.12841.1 ID=prot_L-elsbetiae_contig4906.12841.1|Name=mRNA_L-elsbetiae_contig4906.12841.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=160bp
MRSAARRVVFLEGHPEQVCREQAAMMKAFVRWNGAAVTRAREESNTELAA
AWQMLHASEIGLPPTAPAPAPTAPARAAAAAAAAAAAAAAAAAAAATTPS
ASPLSRAHDAYLRYVEAKTSAALAADPTSPTATAARGLEIRRIGRMADAW
MWKNRRWVCA
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mRNA from alignment at L-elsbetiae_contig4906:10083..10915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4906.12841.1 ID=mRNA_L-elsbetiae_contig4906.12841.1|Name=mRNA_L-elsbetiae_contig4906.12841.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=833bp|location=Sequence derived from alignment at L-elsbetiae_contig4906:10083..10915+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCGTCGAGGAACGCGAGCTCTCAAAGGCCTGGGTCACGCTGTGGGGTT
GACGTCTGCACCTCGACCGCTCCACCAAGACTTGGGTCGACGTCCACGGT
GGTGACGATGCGGTGATGCGCTCCGCAGCACGGCGCGTGGTTTTCCTTGA
GGGCCACCCGGAGCAGGTACCGGCTGTTACACAAATGTGTGAGAACCCGT
CACATGATCTTCCGAAAATAGTGTGTGGGGAGGATTTTGGGGTACGCATC
ATAGGCGTGAGGTAGAACCTAGGGACGTCCTCGAGGGTAACACATTTCAG
ACCCCGACACGGGAAACAATGGCTTTTGGCATAATACGCGCTCAACTCAA
GTTCTTACCTTCAACAACATACTTTGCCGTATACACGCGCCGTTTCGATG
ACAGGTCTGCAGAGAACAGGCTGCGATGATGAAGGCTTTCGTGCGCTGGA
ATGGAGCTGCCGTGACCAGGGCCAGAGAGGAGTCCAACACCGAGCTCGCT
GCTGCTTGGCAGATGTTGCACGCTTCTGAGATCGGCCTCCCACCGACGGC
ACCAGCACCGGCACCTACAGCACCAGCACGAGCGGCAGCGGCAGCGGCAG
CGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCGACAACGCCC
TCGGCTTCGCCTTTGAGCCGGGCGCACGATGCCTACCTTCGCTACGTCGA
GGCCAAGACCTCCGCTGCCCTCGCCGCGGACCCCACGTCTCCGACAGCCA
CGGCAGCGAGGGGCCTGGAGATTCGAAGGATCGGCCGCATGGCGGATGCC
TGGATGTGGAAGAACCGCCGCTGGGTGTGCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4906:10083..10915+

>mRNA_L-elsbetiae_contig4906.12841.1 ID=mRNA_L-elsbetiae_contig4906.12841.1|Name=mRNA_L-elsbetiae_contig4906.12841.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=960bp|location=Sequence derived from alignment at L-elsbetiae_contig4906:10083..10915+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCTCCGCAGCACGGCGCGTGGTTTTCCTTGAGGGCCACCCGGAGCA
GATGCGCTCCGCAGCACGGCGCGTGGTTTTCCTTGAGGGCCACCCGGAGC
AGGTCTGCAGAGAACAGGCTGCGATGATGAAGGCTTTCGTGCGCTGGAAT
GGAGCTGCCGTGACCAGGGCCAGAGAGGAGTCCAACACCGAGCTCGCTGC
TGCTTGGCAGATGTTGCACGCTTCTGAGATCGGCCTCCCACCGACGGCAC
CAGCACCGGCACCTACAGCACCAGCACGAGCGGCAGCGGCAGCGGCAGCG
GCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCGACAACGCCCTC
GGCTTCGCCTTTGAGCCGGGCGCACGATGCCTACCTTCGCTACGTCGAGG
CCAAGACCTCCGCTGCCCTCGCCGCGGACCCCACGTCTCCGACAGCCACG
GCAGCGAGGGGCCTGGAGATTCGAAGGATCGGCCGCATGGCGGATGCCTG
GATGTGGAAGAACCGCCGCTGGGTGTGCGCCGTCTGCAGAGAACAGGCTG
CGATGATGAAGGCTTTCGTGCGCTGGAATGGAGCTGCCGTGACCAGGGCC
AGAGAGGAGTCCAACACCGAGCTCGCTGCTGCTTGGCAGATGTTGCACGC
TTCTGAGATCGGCCTCCCACCGACGGCACCAGCACCGGCACCTACAGCAC
CAGCACGAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCA
GCGGCAGCGGCAGCGGCGACAACGCCCTCGGCTTCGCCTTTGAGCCGGGC
GCACGATGCCTACCTTCGCTACGTCGAGGCCAAGACCTCCGCTGCCCTCG
CCGCGGACCCCACGTCTCCGACAGCCACGGCAGCGAGGGGCCTGGAGATT
CGAAGGATCGGCCGCATGGCGGATGCCTGGATGTGGAAGAACCGCCGCTG
GGTGTGCGCC
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