mRNA_L-elsbetiae_contig4899.12824.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4899.12824.1
Unique NamemRNA_L-elsbetiae_contig4899.12824.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig4899.12824.1 vs. uniprot
Match: D7FR39_ECTSI (Mx1, Mx-like dynamin-related GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR39_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.030e-37
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 1
Query:    1 LPQSARGYYRDDVLSARPALRLHAASQAIFRQLHHNIAATVPGFNDVGFGDRLGREIAALRGREMPGFLNHQAKTLFLIEYI 246
            L QSARGYYRDDVLSA+P LRLHAASQAIFRQLH NIAATVPGFNDVGFGDRLGREIAALRGREMPGFLNHQ    F+I+ +
Sbjct:  389 LRQSARGYYRDDVLSAKPTLRLHAASQAIFRQLHQNIAATVPGFNDVGFGDRLGREIAALRGREMPGFLNHQVFYGFMIQNV 470          
BLAST of mRNA_L-elsbetiae_contig4899.12824.1 vs. uniprot
Match: A0A836CJ76_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ76_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.990e-26
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 1
Query:    1 LPQSARGYYRDDVLSARPALRLHAASQAIFRQLHHNIAATVPGFNDVGFGDRLGREIAALRGREMPGFLNHQAKTLFLIEYI 246
            L QSARGYYRDD+LS++P LRLHA  QAIF+ LH +IA T+PGFND GFGD+L  EI AL+GRE+PGFLN Q    F+++ +
Sbjct:  361 LRQSARGYYRDDLLSSKPDLRLHAECQAIFKSLHADIADTMPGFNDPGFGDKLAAEITALKGRELPGFLNLQVFYGFMVQNV 442          
BLAST of mRNA_L-elsbetiae_contig4899.12824.1 vs. uniprot
Match: A0A7S3NNK1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNK1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.880e-13
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 1
Query:    1 LPQSARGYYRDDVLSARPALRLHAASQAIFRQLHHNIAATVPGFNDVGFGDRLGREIAALRGREMPGFLNHQAKTLFLIEYI 246
            L QSARG Y + +L+ R  LRL   +Q IFR L   +AAT P F D  F +RL  E+AA RGRE+PGF N Q    F+++ I
Sbjct:   95 LRQSARGNYGNAMLAKRAELRLFGEAQTIFRSLKDEVAATQPRFEDSIFIERLTAEMAAFRGRELPGFTNSQVFYGFMVQNI 176          
BLAST of mRNA_L-elsbetiae_contig4899.12824.1 vs. uniprot
Match: F0YHI1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHI1_AURAN)

HSP 1 Score: 69.7 bits (169), Expect = 4.810e-12
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    1 LPQSARGYYRDDVLSARPALRLHAASQAIFRQLHHNIAATVPGFNDVGFGDRLGREIAALRGREMPGFLNHQAKTLFLIEYI 246
            L    RG YRD ++   P LRL+  +  IF++L   + AT P F   GF   L R++ ALRGRE+PGF++ Q+  +F+ E+I
Sbjct:  351 LNDCVRGEYRDRLIVCNPNLRLYTRALVIFQELQSRVVATAPPFRAHGFVTDLARQMEALRGRELPGFMSAQSFYMFIQEFI 432          
BLAST of mRNA_L-elsbetiae_contig4899.12824.1 vs. uniprot
Match: F0YGN9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGN9_AURAN)

HSP 1 Score: 65.5 bits (158), Expect = 1.490e-10
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 1
Query:    1 LPQSARGYYRDDVLSARPALRLHAASQAIFRQLHHNIAATVPGFNDVGFGDRLGREIAALRGREMPGFLNHQAKTLFLIEYI 246
            L    RG YRD ++   P LRL+  +  IF++L   + +T P F    F   L R++ ALRGRE+PGF++ Q+  +F+ E+I
Sbjct:  393 LNDCVRGEYRDRLIVCNPNLRLYTRALVIFQELQSRVISTAPLFQAGDFVTNLARQMEALRGRELPGFMSAQSFYMFIQEFI 474          
BLAST of mRNA_L-elsbetiae_contig4899.12824.1 vs. uniprot
Match: A0A7S4EAV6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EAV6_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.650e-7
Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 1
Query:    1 LPQSARGYYRDDVLSARPA----LRLHAASQAIFRQLHHNIAATVPGFNDVGFGDRLGREIAALRGREMPGFLNHQAKTLFLIEYI 246
            L  SARG YR++ L+        LRL A +  +FR L   I++  P F    F ++L +E+AALRGRE+PG LN      F+  ++
Sbjct:  432 LMASARGDYRNERLARADEDSSQLRLRAVADRVFRDLEAEISSLKPDFEARDFTNKLHQELAALRGRELPGLLNSYFFYGFMARHV 517          
BLAST of mRNA_L-elsbetiae_contig4899.12824.1 vs. uniprot
Match: A0A8J2X3H9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3H9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.690e-7
Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 1
Query:    1 LPQSARGYYRDDVLSARPA----LRLHAASQAIFRQLHHNIAATVPGFNDVGFGDRLGREIAALRGREMPGFLNHQAKTLFLIEYI 246
            L  SARG YR++ L+        LRL A +  +FR L   I++  P F    F ++L +E+AALRGRE+PG LN      F+  ++
Sbjct:  366 LMASARGDYRNERLARADEDSSQLRLRAVADRVFRDLEAEISSLKPDFEARDFTNKLHQELAALRGRELPGLLNSYFFYGFMARHV 451          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4899.12824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FR39_ECTSI1.030e-3785.37Mx1, Mx-like dynamin-related GTPase n=1 Tax=Ectoca... [more]
A0A836CJ76_9STRA2.990e-2663.41P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3NNK1_9STRA2.880e-1348.78Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0YHI1_AURAN4.810e-1241.46Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
F0YGN9_AURAN1.490e-1039.02Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S4EAV6_9STRA3.650e-738.37Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A8J2X3H9_9STRA3.690e-738.37Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4899contigL-elsbetiae_contig4899:658..906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue3e-32
Seed eggNOG ortholog2880.D7FR39
KEGG koko:K20291
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mitochondrial fission
EggNOG OGsCOG0699@1,KOG0446@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816484.0870624-CDS-L-elsbetiae_contig4899:657..9061622816484.0870624-CDS-L-elsbetiae_contig4899:657..906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4899 658..906 +
1691683592.8070705-CDS-L-elsbetiae_contig4899:657..9061691683592.8070705-CDS-L-elsbetiae_contig4899:657..906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4899 658..906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4899.12824.1prot_L-elsbetiae_contig4899.12824.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4899 658..906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4899.12824.1

>prot_L-elsbetiae_contig4899.12824.1 ID=prot_L-elsbetiae_contig4899.12824.1|Name=mRNA_L-elsbetiae_contig4899.12824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
LPQSARGYYRDDVLSARPALRLHAASQAIFRQLHHNIAATVPGFNDVGFG
DRLGREIAALRGREMPGFLNHQAKTLFLIEYI*
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mRNA from alignment at L-elsbetiae_contig4899:658..906+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4899.12824.1 ID=mRNA_L-elsbetiae_contig4899.12824.1|Name=mRNA_L-elsbetiae_contig4899.12824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=249bp|location=Sequence derived from alignment at L-elsbetiae_contig4899:658..906+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCCCCAGTCGGCGAGGGGCTACTACCGCGACGATGTCCTCTCCGCCAG GCCCGCCCTCAGGCTGCACGCGGCGAGCCAGGCCATCTTCCGGCAGCTCC ACCACAACATCGCCGCCACGGTGCCGGGGTTCAACGACGTGGGCTTCGGG GACCGTCTGGGCAGAGAGATCGCGGCCCTCCGGGGCCGGGAGATGCCGGG CTTCTTGAACCACCAGGCAAAGACGTTGTTTTTAATTGAATATATTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4899:658..906+

>mRNA_L-elsbetiae_contig4899.12824.1 ID=mRNA_L-elsbetiae_contig4899.12824.1|Name=mRNA_L-elsbetiae_contig4899.12824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig4899:658..906+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCCCCAGTCGGCGAGGGGCTACTACCGCGACGATGTCCTCTCCGCCAG
GCCCGCCCTCAGGCTGCACGCGGCGAGCCAGGCCATCTTCCGGCAGCTCC
ACCACAACATCGCCGCCACGGTGCCGGGGTTCAACGACGTGGGCTTCGGG
GACCGTCTGGGCAGAGAGATCGCGGCCCTCCGGGGCCGGGAGATGCCGGG
CTTCTTGAACCACCAGGCAAAGACGTTGTTTTTAATTGAATATATTTAGC
TCCCCCAGTCGGCGAGGGGCTACTACCGCGACGATGTCCTCTCCGCCAGG
CCCGCCCTCAGGCTGCACGCGGCGAGCCAGGCCATCTTCCGGCAGCTCCA
CCACAACATCGCCGCCACGGTGCCGGGGTTCAACGACGTGGGCTTCGGGG
ACCGTCTGGGCAGAGAGATCGCGGCCCTCCGGGGCCGGGAGATGCCGGGC
TTCTTGAACCACCAGGCAAAGACGTTGTTTTTAATTGAATATATTTAG
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