prot_L-elsbetiae_contig4894.12818.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig4894.12818.1
Unique Nameprot_L-elsbetiae_contig4894.12818.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length656
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig4894.12818.1 vs. uniprot
Match: A0A6H5LAN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAN8_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 3.440e-23
Identity = 61/72 (84.72%), Postives = 69/72 (95.83%), Query Frame = 0 
Query:  570 APAPAAAPPSDLSAFISQLMHLPGFTMEKCMELTRSKERAEIASAIKTISHDEKDSFRSRQLERLLAIKEQE 641
            APA + AP +DL++FI+QLMH+PGFTMEKCMELTRSKERAEIASAI+TISHDEKDSFRSRQLERLLAIKE+E
Sbjct:  642 APAASPAPSADLASFIAQLMHVPGFTMEKCMELTRSKERAEIASAIRTISHDEKDSFRSRQLERLLAIKEKE 713
[Close]
BLAST of mRNA_L-elsbetiae_contig4894.12818.1 vs. uniprot
Match: D8LQ04_ECTSI (USP7_ICP0_bdg domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ04_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.590e-18
Identity = 122/188 (64.89%), Postives = 135/188 (71.81%), Query Frame = 0 
Query:   85 NAPGWDGGHIAAPAAAGXXXXXXXXXXAEPAANIPGVMNAEAQKRATYLALFQVQENARQHQVKEAARAVAKKLAAEAALAAATERHKQSSGALGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLSPSEKAEVAQAARMAAQLAAAEHATKAAALAATHRSYRTVSIKEALREGAPP 272
            +APGWDGG    PAA            A P   IP VM+  AQ+RAT LALFQVQEN RQHQ KEAARAVAKKLAAEA L +A E+ K+ +     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  L+P+++AEVA A RMAA  AA EHA   A      ++YRTVSI EALREGAPP
Sbjct:  345 SAPGWDGG----PAAV-------VGRVASPPGEIPVVMDPAAQRRATCLALFQVQENQRQHQAKEAARAVAKKLAAEAVLTSAKEKLKKIA-TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFLTPAQQAEVAAAXRMAAHAAAVEHAQSKA------QAYRTVSIMEALREGAPP 514
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4894.12818.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAN8_9PHAE3.440e-2384.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ04_ECTSI1.590e-1864.89USP7_ICP0_bdg domain-containing protein n=1 Tax=Ec... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..655

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4894contigL-elsbetiae_contig4894:6264..13135 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4894.12818.1mRNA_L-elsbetiae_contig4894.12818.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig4894 5923..13348 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig4894.12818.1 ID=prot_L-elsbetiae_contig4894.12818.1|Name=mRNA_L-elsbetiae_contig4894.12818.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=656bp
MSSSIVPFKTAAAAAAAATATATATAVSAHVPKPQLPARSGIDAAVAAAS
AAVPSSGLTASGTLHGGASAAKAENNGGAGAGGNNAPGWDGGHIAAPAAA
GGAGAGAGAGAAEPAANIPGVMNAEAQKRATYLALFQVQENARQHQVKEA
ARAVAKKLAAEAALAAATERHKQSSGALGAAISSASKTAVGAGGKTVAAA
RAAAVAAAAAAMKPPPPPVLSPSEKAEVAQAARMAAQLAAAEHATKAAAL
AATHRSYRTVSIKEALREGAPPPAPAMSGAAAATDVVARQTVAAAAAAAA
AAVPSAPVAAPAPSLSGGGGGGGGGIVQAAAGVPGNDGTKSGPRAGGDGE
TLANKARAATVAAVEGGAAAVAEEKIDVDGSSASSTDVSCAAGAAVSDEA
SGTVTVAAAADGDGRAGANAGGRPAAAAAVAATTGEDEGGPDKSESVAPA
AAAAAAAAVAAEAAAAAAAAAAAPVEMQRRSSRKAAAVAAQQIQTSARAG
TRSSTGGASAQGGTDGAARSPRGGGGGGGGGGDGGGCVKRRADGGEGGAG
SRKSAKIEKGEDEAVASMPAPAPAAAPPSDLSAFISQLMHLPGFTMEKCM
ELTRSKERAEIASAIKTISHDEKDSFRSRQLERLLAIKEQEARDGDGGGG
GGGGE*
back to top