mRNA_L-elsbetiae_contig4885.12803.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4885.12803.1
Unique NamemRNA_L-elsbetiae_contig4885.12803.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4885.12803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4885contigL-elsbetiae_contig4885:12183..12618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size436
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4885.12803.1prot_L-elsbetiae_contig4885.12803.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4885 12236..12589 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816482.2228634-UTR-L-elsbetiae_contig4885:12182..122351622816482.2228634-UTR-L-elsbetiae_contig4885:12182..12235Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4885 12183..12235 +
1691683591.5715997-UTR-L-elsbetiae_contig4885:12182..122351691683591.5715997-UTR-L-elsbetiae_contig4885:12182..12235Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4885 12183..12235 +
1622816482.2480047-UTR-L-elsbetiae_contig4885:12589..126181622816482.2480047-UTR-L-elsbetiae_contig4885:12589..12618Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4885 12590..12618 +
1691683591.5921626-UTR-L-elsbetiae_contig4885:12589..126181691683591.5921626-UTR-L-elsbetiae_contig4885:12589..12618Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4885 12590..12618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816482.2358336-CDS-L-elsbetiae_contig4885:12235..125891622816482.2358336-CDS-L-elsbetiae_contig4885:12235..12589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4885 12236..12589 +
1691683591.5834372-CDS-L-elsbetiae_contig4885:12235..125891691683591.5834372-CDS-L-elsbetiae_contig4885:12235..12589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4885 12236..12589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4885.12803.1

>prot_L-elsbetiae_contig4885.12803.1 ID=prot_L-elsbetiae_contig4885.12803.1|Name=mRNA_L-elsbetiae_contig4885.12803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MLCLSVCLSLSLSAEHLVACFSIFLLSLETPLLFAEGQVRRRSLLFSETG
VKLRRWSSRRLGGAWIREWLCYIREHILYFFIIGIQYSFVSFFFRSVECA
LFCGHRPPRMLWTRELM*
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mRNA from alignment at L-elsbetiae_contig4885:12183..12618+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4885.12803.1 ID=mRNA_L-elsbetiae_contig4885.12803.1|Name=mRNA_L-elsbetiae_contig4885.12803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=436bp|location=Sequence derived from alignment at L-elsbetiae_contig4885:12183..12618+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCGCTTTTATAACTGCTCCTTAAAAAGAACAAGACCTGCAGATATATT
CCTATGCTCTGTCTTTCTGTCTGTCTCTCTCTCTCTCTCTCTGCAGAGCA
TTTGGTAGCGTGTTTTTCTATTTTTTTACTCTCGCTTGAAACTCCGCTTT
TATTCGCCGAAGGGCAAGTGCGCCGAAGGAGTCTGCTCTTTTCCGAGACG
GGGGTAAAACTGAGGCGCTGGTCGTCACGCCGGCTTGGTGGTGCATGGAT
AAGAGAATGGCTGTGTTACATACGCGAGCATATATTATATTTTTTTATCA
TAGGTATACAATATTCGTTTGTTTCATTTTTCTTCCGCAGCGTCGAGTGT
GCCTTGTTTTGTGGCCACAGGCCCCCAAGGATGCTTTGGACTAGAGAGCT
AATGTGAGAAACACCAACAACAACAACGACAAATTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4885:12183..12618+

>mRNA_L-elsbetiae_contig4885.12803.1 ID=mRNA_L-elsbetiae_contig4885.12803.1|Name=mRNA_L-elsbetiae_contig4885.12803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig4885:12183..12618+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCTGTCTTTCTGTCTGTCTCTCTCTCTCTCTCTCTGCAGAGCATTT
GGTAGCGTGTTTTTCTATTTTTTTACTCTCGCTTGAAACTCCGCTTTTAT
TCGCCGAAGGGCAAGTGCGCCGAAGGAGTCTGCTCTTTTCCGAGACGGGG
GTAAAACTGAGGCGCTGGTCGTCACGCCGGCTTGGTGGTGCATGGATAAG
AGAATGGCTGTGTTACATACGCGAGCATATATTATATTTTTTTATCATAG
GTATACAATATTCGTTTGTTTCATTTTTCTTCCGCAGCGTCGAGTGTGCC
TTGTTTTGTGGCCACAGGCCCCCAAGGATGCTTTGGACTAGAGAGCTAAT
GTGAATGCTCTGTCTTTCTGTCTGTCTCTCTCTCTCTCTCTCTGCAGAGC
ATTTGGTAGCGTGTTTTTCTATTTTTTTACTCTCGCTTGAAACTCCGCTT
TTATTCGCCGAAGGGCAAGTGCGCCGAAGGAGTCTGCTCTTTTCCGAGAC
GGGGGTAAAACTGAGGCGCTGGTCGTCACGCCGGCTTGGTGGTGCATGGA
TAAGAGAATGGCTGTGTTACATACGCGAGCATATATTATATTTTTTTATC
ATAGGTATACAATATTCGTTTGTTTCATTTTTCTTCCGCAGCGTCGAGTG
TGCCTTGTTTTGTGGCCACAGGCCCCCAAGGATGCTTTGGACTAGAGAGC
TAATGTGA
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