mRNA_L-elsbetiae_contig4879.12795.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4879.12795.1
Unique NamemRNA_L-elsbetiae_contig4879.12795.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4879.12795.1 vs. uniprot
Match: D8LD08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD08_ECTSI)

HSP 1 Score: 640 bits (1651), Expect = 3.180e-218
Identity = 384/610 (62.95%), Postives = 441/610 (72.30%), Query Frame = 2 
Query:  512 VSINNSGDKTFAMRFSLERCSEVLPVMPPTMIGILSRDPDKYGTKLDTSSHEDTFSKVVKAFDVLRFVMGQDVMNTRVSGGKTDAALAKMYGEGKYLLHDKRLEAGALEGKISGLICVATETKKGRVPLVTFSNEENLRALKLLFKGLYINGMKRLMDAINEIDETCAGRGGWFYDV*GPRKF---------------LQRVRRRRWRLRKNTWRATRNKGF*SRIWWRR*RKRVSLASTLS*PACVHPCVTCSSRIHFATKVFTTVFTTVARRTYWSMVRPSRG-TP*GWLPNFRERARLVSTG-GSGDGAAQDHVIDVDTGEWYAILNIVGRAFHRNSSGDNSIASQFIGPIDKNGNDMLSERFKEILKK-----------RVSAMRTVVATLVMAECTALGIRMDDPIVKDFASSILSSTMQKHYDAHRATTRQTRRVQRYYEGTIDFSGGAYGVVEGSEKRRLEMERNEEGKELVCAIDKPGEDNSDLQLQLRWYKLELTEREXXXXXXXXXXXXXXXTKNENPKARHVGTFHSQACGSSNVHHASLHRKPVAERDIKPDTKVKKVRFE--YVLLDAIKTAHARARSRGNGDVLKYLELPRFRKGH 2251
            VS N SGDKTFAMRFSLE  +EVLPVMPPTMIG+LSRDPDKYGTKLDTSS+ DTFSKV KAFDVL+ VM Q+ ++ +  GG+TDAA+ +MY + KYLLHDKRL+AGALEGKISGL  VAT+TKKGRVPLVTFSNE NLRALKLLFKGLY+NGMK LMDAI EID TCAG+GGW YD+    +F               L+   ++R  + K    A + KG          RK   LAS           V  S R  F +           R T+  +   +    P   +     ++++   G GSGDGAAQ+HVIDVDTG+WYAI N+VGRAFHR+ SGDNSIASQFIGP+DK GNDM  ERFK ILKK            V++MRTVV TLVMAECTALGIRMDDPI+KDFASSILSSTMQKHYDAHRAT RQ+RRVQR YEGTIDFSGGAYGVVEGSEKRRLEME++E+GK +VCAI+K  EDNSDLQLQLRW KL      XXXXXXXXXXXXXX  KNENP  R VGT  SQA GS++ H A +HRK +A++DIKP+TKVKK   E    LLDA KTAHARAR+RG+GDVLK+L+ PRFR GH
Sbjct:  175 VSTNFSGDKTFAMRFSLESSNEVLPVMPPTMIGVLSRDPDKYGTKLDTSSYVDTFSKVAKAFDVLKIVMDQNAVDNQGGGGQTDAAIERMYAQIKYLLHDKRLQAGALEGKISGLTGVATKTKKGRVPLVTFSNEHNLRALKLLFKGLYVNGMKPLMDAIAEIDATCAGKGGWCYDILRAAEFPATNTKKKAVVTVEQLEGNAKQRLLVMKMV-EALKEKGVT--------RKHFELAS-----------VCASVRDVFTSYPLRNQGFYYRRATHLHVNGQNESKNPGRVVARLPGKSKVSKHGNGSGDGAAQEHVIDVDTGDWYAIPNVVGRAFHRSFSGDNSIASQFIGPMDKKGNDMKPERFKGILKKIGQAYLSSENMSVTSMRTVVVTLVMAECTALGIRMDDPIIKDFASSILSSTMQKHYDAHRATIRQSRRVQRGYEGTIDFSGGAYGVVEGSEKRRLEMEKHEKGKGVVCAIEKTEEDNSDLQLQLRWCKLXXXXXXXXXXXXXXXXXXXXSKKNENPNVRPVGTLQSQADGSTDDHDAGVHRKTLAKQDIKPETKVKKGAREGMLALLDATKTAHARARARGSGDVLKHLDSPRFRNGH 764
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BLAST of mRNA_L-elsbetiae_contig4879.12795.1 vs. uniprot
Match: D7FHJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ0_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 5.900e-74
Identity = 178/465 (38.28%), Postives = 244/465 (52.47%), Query Frame = 2 
Query:  518 INNSGDK-TFAMRFSLERCSEVLPVMPPTMIGILSRDPDKYGTKLDTSSHEDTFSKVVKAFDVLRFVMGQDVMNTRVSGGKTDAALAKMYGEGKYLLHDKRLEAGALEGKISGLICVATETKKGRVPLVTFSNEENLRALKLLFKGLYINGMKRLMDAINEIDETCAGRGGWFYDV*GPRKFLQRVRRRRWRLRKNTWRATRN----------KGF*SRIWWRR*RKRVSLASTLS*PACVHPCVTCSSRIHFATKVFTTVFTTVARRTYWSMVRPSRGTP*GWLPNFRERARLVSTG-GSGDGAAQDHVIDVDTGEWYAILNIVGRAFHRNSSGDNSIASQFIGPIDKNGNDMLSERFKEILKK-----------RVSAMRTVVATLVMAECTALGIRMDDPIVKDFASSILSST--MQKHYDAHRATTRQTRRVQRYYEGTIDFSGGAYGVVEGSEKRRLEME 1837
            IN    K T AMRFSLERC+EV+P +PP M+ +LS+D  +YGT +D S+H  TF+K  KA  +L+ VM +D        G T+ AL ++Y +    L  KR EAG  EG+ SGL  VA + +KG VP      EE+   +K L +G+YINGMKR++DAI+EID  C G  GW YD+    +      ++R    +   R              +G  SR   R   +  S A+ +      HP     ++  F  +     F+   RR   +  R   G P         +  L   G GSG+G A++HVIDVD G WYA+ N++GRAF  +        S +IGP+D  G  M  +RF  I+KK            +   RT   TLVM+  TALGI M  P++KDFAS  LSS   M+  Y  HRA T+QT R Q  Y+G +DFSGGAY +++G+ +   EME
Sbjct:  347 INGDPKKMTVAMRFSLERCNEVIPNIPPAMVKVLSKDDGRYGTLIDKSNHTGTFTKAAKALPLLKCVMQRDPELGLEESGPTEFALGQVYNQVGKFLQAKRNEAGEEEGRESGLKGVAKKARKGNVPFARLPYEESFELVKFLLRGMYINGMKRVLDAIDEIDGKCLGDDGWCYDILRVAEVASTSVKKRPVFTEKQLRGVDEVQRRRIAAVVEGLKSRGIRREHFELASAATGVRDMVSPHPL---RNQGFFFRRWAN--FSVNGRRESRNPGRMVAGLP--------PKNNLSKHGHGSGNGVAREHVIDVDCGYWYAVTNVIGRAFFESVDDPQGELSPYIGPVDARGGVMAQKRFNGIVKKIGRAYLAVENLTIMQFRTACCTLVMSLSTALGIPMSSPVIKDFASGFLSSEKMMETRYYVHRAVTKQTGRFQLRYKGVVDFSGGAYSILKGAVEHEREME 798
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BLAST of mRNA_L-elsbetiae_contig4879.12795.1 vs. uniprot
Match: D7G514_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G514_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 1.820e-40
Identity = 80/112 (71.43%), Postives = 88/112 (78.57%), Query Frame = 1 
Query:   31 EKTELEGVFICRGCRSWPFAKASVEDTVHMLPVKATVEGDVGHDEACALCAFASSERSLSRLKMLGGLGGADDTSAALVDDNDTKLMVRMVTRKGESMHGAYPLHINHVVHL 366
            EK EL GV   R      FA AS+EDTVH LPVKAT EGD GH+EA AL AFASSE SLS+L  LGG+GGAD+TS ALVDDNDT LM+RMVTRKG+S+HGAYP HINH VHL
Sbjct:   27 EKAELGGVATMRRLSRLAFANASMEDTVHALPVKATAEGDAGHEEAIALRAFASSEGSLSKLNFLGGIGGADETSDALVDDNDTALMIRMVTRKGKSVHGAYPSHINHAVHL 138
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4879.12795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LD08_ECTSI3.180e-21862.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHJ0_ECTSI5.900e-7438.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G514_ECTSI1.820e-4071.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4879contigL-elsbetiae_contig4879:1600..4315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1.4e-13
Seed eggNOG ortholog2880.D7FHJ0
Hectar predicted targeting categoryother localisation
EggNOG OGs2EVBK@1,2SXC2@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_001820.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size2251
Cds size246
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816481.377584-UTR-L-elsbetiae_contig4879:1599..17071622816481.377584-UTR-L-elsbetiae_contig4879:1599..1707Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4879 1600..1707 -
1691683590.9087071-UTR-L-elsbetiae_contig4879:1599..17071691683590.9087071-UTR-L-elsbetiae_contig4879:1599..1707Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4879 1600..1707 -
1622816481.3881228-UTR-L-elsbetiae_contig4879:1852..19511622816481.3881228-UTR-L-elsbetiae_contig4879:1852..1951Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4879 1853..1951 -
1691683590.921555-UTR-L-elsbetiae_contig4879:1852..19511691683590.921555-UTR-L-elsbetiae_contig4879:1852..1951Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4879 1853..1951 -
1622816481.3984575-UTR-L-elsbetiae_contig4879:2051..24021622816481.3984575-UTR-L-elsbetiae_contig4879:2051..2402Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4879 2052..2402 -
1691683590.9313905-UTR-L-elsbetiae_contig4879:2051..24021691683590.9313905-UTR-L-elsbetiae_contig4879:2051..2402Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4879 2052..2402 -
1622816481.4127676-UTR-L-elsbetiae_contig4879:2531..28351622816481.4127676-UTR-L-elsbetiae_contig4879:2531..2835Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4879 2532..2835 -
1691683590.9409335-UTR-L-elsbetiae_contig4879:2531..28351691683590.9409335-UTR-L-elsbetiae_contig4879:2531..2835Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4879 2532..2835 -
1622816481.4474235-UTR-L-elsbetiae_contig4879:3172..43151622816481.4474235-UTR-L-elsbetiae_contig4879:3172..4315Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4879 3173..4315 -
1691683590.9799907-UTR-L-elsbetiae_contig4879:3172..43151691683590.9799907-UTR-L-elsbetiae_contig4879:3172..4315Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4879 3173..4315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816481.4235353-CDS-L-elsbetiae_contig4879:2835..29601622816481.4235353-CDS-L-elsbetiae_contig4879:2835..2960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4879 2836..2960 -
1691683590.9534495-CDS-L-elsbetiae_contig4879:2835..29601691683590.9534495-CDS-L-elsbetiae_contig4879:2835..2960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4879 2836..2960 -
1622816481.4345336-CDS-L-elsbetiae_contig4879:3051..31721622816481.4345336-CDS-L-elsbetiae_contig4879:3051..3172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4879 3052..3172 -
1691683590.9692388-CDS-L-elsbetiae_contig4879:3051..31721691683590.9692388-CDS-L-elsbetiae_contig4879:3051..3172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4879 3052..3172 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4879.12795.1prot_L-elsbetiae_contig4879.12795.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4879 2836..3172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4879.12795.1

>prot_L-elsbetiae_contig4879.12795.1 ID=prot_L-elsbetiae_contig4879.12795.1|Name=mRNA_L-elsbetiae_contig4879.12795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
MVEALKEKGITRKHFELTSVCASVRDVFKSYPLRYQGFYYRFYDRRAAHL
LVNGQTESRNPVRVVAQLPGKSKVSKHGWEW*
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mRNA from alignment at L-elsbetiae_contig4879:1600..4315-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4879.12795.1 ID=mRNA_L-elsbetiae_contig4879.12795.1|Name=mRNA_L-elsbetiae_contig4879.12795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2716bp|location=Sequence derived from alignment at L-elsbetiae_contig4879:1600..4315- (Laminarionema elsbetiae ELsaHSoW15)
GATTGGTCCAAGCGAGAGCTTAGTAGCGACGAAAAGACCGAGCTCGAAGG
TGTCTTCATATGCAGAGGTTGTCGAAGCTGGCCTTTCGCCAAGGCATCGG
TGGAGGACACTGTCCACATGCTACCGGTGAAAGCCACGGTAGAGGGAGAC
GTCGGGCATGATGAAGCCTGCGCCTTGTGCGCCTTCGCCAGCAGCGAAAG
ATCGCTCAGCAGGCTCAAAATGCTGGGGGGTCTTGGTGGTGCCGACGATA
CCAGTGCTGCCTTGGTGGACGACAACGACACAAAGCTGATGGTCAGAATG
GTAACGAGAAAGGGAGAGTCGATGCACGGTGCTTACCCGTTACATATCAA
CCACGTCGTACACCTTCAGTACGCCTACCGACTAAATTGCCCGATCAGCT
TACACGAGGCCTACCAACCGTTGTGCGCTGACGAGCGCGAAGTTCTTCGC
GAGCATTTCGGCTACTGGGATGACAACCAAGAGGACCAAGAGGACTACAC
TATTTCACCGGGTTTCCATCAACAACTCGGGTGACAAGACATTTGCGATG
CGCTTCTCGCTGGAAAGGTGTAGCGAGGTCCTCCCCGTCATGCCACCGAC
GATGATTGGGATACTTTCGAGGGATCCTGACAAGTACGGAACGAAGCTCG
ATACTAGCAGCCATGAGGACACGTTTTCCAAGGTTGTAAAAGCATTCGAT
GTCCTGAGATTTGTCATGGGCCAAGACGTCATGAACACGCGAGTGAGCGG
TGGTAAGACGGATGCCGCATTAGCAAAGATGTATGGTGAGGGAAAATACC
TTCTTCACGACAAGAGGCTCGAGGCGGGCGCCCTTGAGGGGAAGATCAGC
GGATTGATTTGCGTCGCGACAGAGACGAAGAAGGGGAGGGTGCCGCTTGT
GACGTTTTCGAACGAAGAAAACTTGCGCGCGTTGAAGCTTCTCTTCAAGG
GACTGTACATCAATGGAATGAAGCGCCTGATGGATGCGATCAACGAAATC
GACGAGACGTGTGCTGGCCGAGGAGGGTGGTTCTACGATGTTTGAGGGCC
GCGGAAATTCCTGCAACGAGTACGAAGAAGAAGGTGGCGACTACGGAAGA
ACACCTGGAGGGCAACGCGAAACAAAGGCTTCTGATCACGAATATGGTGG
AGGCGTTGAAGGAAAAGGGTATCACTCGCAAGCACTTTGAGCTAACCAGC
GTGTGTGCATCCGTGCGTGACGTGTTCAAGTCGTATCCACTTCGCTACCA
AGGTTTTTACTACCGTCGCGCGGCGCACTTGCAAGCACTTTGAGCTAGCC
AGCGTGTGTGCATCCGTGCGTGACGTGTTCAAGTCGTATTCACTTCGCCA
CCAAGGTTTTTACGACCGTCGCGCGGCGCACTTACTGGTCAATGGTCAGA
CCGAGTCGAGGAACCCCGTGAGGGTGGTTGCCCAACTTCCGGGAAAGAGC
AAGGTTAGTAAGCACGGGTGGGAGTGGTGACGGCGCGGCTCAAGATCATG
TGATCGACGTCGATACCGGGGAGTGGTACGCTATATTGAATATCGTCGGG
CGTGCGTTCCACAGGAACTCCTCTGGTGACAACAGCATCGCCTCGCAATT
CATCGGTCCGATCGATAAGAACGGAAATGACATGTTATCGGAGAGGTTCA
AGGAAATATTGAAGAAGAGGGTGAGTGCCATGCGGACGGTAGTTGCAACC
CTCGTGATGGCCGAGTGCACAGCGTTGGGGATACGGATGGACGATCCAAT
CGTCAAGGACTTTGCTTCCAGCATTCTGTCGTCTGTAAAGGCATGTACAG
TTGACTCCGGTTGTCTTTGTTTGTATCAACATAAAGTGTGTCCTCGTTAC
CATTTGTGTGTGACAGACGGTTCACCTCTTTCTTTCCGTGCTGACAACGT
GTTGAAAACACAGACGATGCAGAAGCACTACGATGCTCACCGGGCTACGA
CAAGGCAAACTAGACGAGTCCAGAGATACTATGAGGGCACAATTGACTTC
AGTGGGGGGGCATATGGAGTGGTGGAGGGATCGGAGAAGCGCCGACTTGA
AATGGAGAGGAATGAGGAAGGGAAGGAGTTGGTGTGCGCAATCGACAAAC
CAGGGGAAGACAACAGTGATCTTCAGCTGCAGCTGAGGTGGTACAAGCTA
GAGCTCACGGAGCGCGAGTTACGAGTGAAGGAACTCGAGCTACAGATGAG
GGAGCGCGAGTTGACGAAGAATGAAAACCCGAAAGCGAGGCATGTGGGCA
CGTTCCACAGTCAGGTGATGAAAATAGTGTAGAGTCATAGCCGTACCTGC
TACAGTTTGTGTTGAAGTTTGTGTTGTATCGCAAACTGACCCTTTTTTGT
CGTCCCCCACACAGGCTTGTGGATCTTCAAATGTCCACCACGCAAGCCTG
CACCGAAAGCCCGTTGCTGAGCGGGATATCAAGCCCGATACTAAAGTTAA
AAAGGTGAGGTTTGTGATGAAGGATGTGGGGGGGGGGGCTTGGAAATCAT
GAACTTCGAGGTGCGTAGATAACGAGACTTCAAATTCAACTCACAACGCG
AACCATCCACTGATTGTTCTTGAACCCTACGCGACCCATCGCCACACCAT
TTTCCAAGGAATATGTCTTACTGGATGCGATCAAGACCGCGCACGCACGC
GCCAGATCAAGGGGGAATGGTGACGTCTTGAAATATTTGGAATTGCCTAG
GTTTCGCAAAGGCCAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4879:1600..4315-

>mRNA_L-elsbetiae_contig4879.12795.1 ID=mRNA_L-elsbetiae_contig4879.12795.1|Name=mRNA_L-elsbetiae_contig4879.12795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig4879:1600..4315- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGAGGCGTTGAAGGAAAAGGGTATCACTCGCAAGCACTTTGAGCT
AACCAGCGTGTGTGCATCCGTGCGTGACGTGTTCAAGTCGTATCCACTTC
GCTACCAAGGTTTTTACTACCATGGTGGAGGCGTTGAAGGAAAAGGGTAT
CACTCGCAAGCACTTTGAGCTAACCAGCGTGTGTGCATCCGTGCGTGACG
TGTTCAAGTCGTATCCACTTCGCTACCAAGGTTTTTACTACCGTTTTTAC
GACCGTCGCGCGGCGCACTTACTGGTCAATGGTCAGACCGAGTCGAGGAA
CCCCGTGAGGGTGGTTGCCCAACTTCCGGGAAAGAGCAAGGTTAGTAAGC
ACGGGTGGGAGTGGTGAGTTTTTACGACCGTCGCGCGGCGCACTTACTGG
TCAATGGTCAGACCGAGTCGAGGAACCCCGTGAGGGTGGTTGCCCAACTT
CCGGGAAAGAGCAAGGTTAGTAAGCACGGGTGGGAGTGGTGA
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