mRNA_L-elsbetiae_contig11455.1276.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11455.1276.1
Unique NamemRNA_L-elsbetiae_contig11455.1276.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11455.1276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11455contigL-elsbetiae_contig11455:760..1268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size510
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815352.3436294-CDS-L-elsbetiae_contig11455:759..10771622815352.3436294-CDS-L-elsbetiae_contig11455:759..1077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11455 760..1077 +
1691682855.715407-CDS-L-elsbetiae_contig11455:759..10771691682855.715407-CDS-L-elsbetiae_contig11455:759..1077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11455 760..1077 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815352.3535197-UTR-L-elsbetiae_contig11455:1077..12681622815352.3535197-UTR-L-elsbetiae_contig11455:1077..1268Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11455 1078..1268 +
1691682855.728111-UTR-L-elsbetiae_contig11455:1077..12681691682855.728111-UTR-L-elsbetiae_contig11455:1077..1268Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11455 1078..1268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11455.1276.1prot_L-elsbetiae_contig11455.1276.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11455 760..1077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11455.1276.1

>prot_L-elsbetiae_contig11455.1276.1 ID=prot_L-elsbetiae_contig11455.1276.1|Name=mRNA_L-elsbetiae_contig11455.1276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
DNAVRRPRPVPKLLAVSHVLRAGGEVLQRVPAGSGGDPARVAAVAGGRAS
LIGIICFNQAAHALTTIPQSPLGSPQVSEFPAIPSKIPGFLSPPRHLFDL
EAWFL*
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mRNA from alignment at L-elsbetiae_contig11455:760..1268+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11455.1276.1 ID=mRNA_L-elsbetiae_contig11455.1276.1|Name=mRNA_L-elsbetiae_contig11455.1276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=509bp|location=Sequence derived from alignment at L-elsbetiae_contig11455:760..1268+ (Laminarionema elsbetiae ELsaHSoW15)
GATAACGCGGTTCGTCGCCCGCGGCCTGTACCGAAACTTCTCGCTGTTTC
GCATGTGCTTCGAGCAGGAGGCGAGGTGCTGCAGAGAGTTCCGGCAGGTT
CAGGTGGAGACCCCGCTCGAGTTGCCGCCGTTGCAGGAGGCCGAGCCAGC
TTGATCGGGATTATTTGCTTCAATCAGGCGGCACACGCATTGACTACAAT
ACCGCAATCCCCTCTAGGATCCCCCCAGGTTTCTGAGTTCCCCGCAATCC
CCTCTAAGATCCCCGGGTTTCTGAGTCCCCCCCGTCACCTTTTTGACCTA
GAGGCATGGTTTCTCTGAGTTCTCTCCGGGGGGTATTGTTTTTGTCACAA
AACAAAATTACCCCCTCCCGGGGAACTTAAGGGGAGATTATGATAGATAT
GTAGACATATGATATATGTAGGAGTCCGGCAACAATGTACATCTTTTACT
GCAAACGCGACGCTTAGATTTTCGTTCAGCCGTATTGTTTGTTTTTAGTT
TTTAGCCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11455:760..1268+

>mRNA_L-elsbetiae_contig11455.1276.1 ID=mRNA_L-elsbetiae_contig11455.1276.1|Name=mRNA_L-elsbetiae_contig11455.1276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig11455:760..1268+ (Laminarionema elsbetiae ELsaHSoW15)
GATAACGCGGTTCGTCGCCCGCGGCCTGTACCGAAACTTCTCGCTGTTTC
GCATGTGCTTCGAGCAGGAGGCGAGGTGCTGCAGAGAGTTCCGGCAGGTT
CAGGTGGAGACCCCGCTCGAGTTGCCGCCGTTGCAGGAGGCCGAGCCAGC
TTGATCGGGATTATTTGCTTCAATCAGGCGGCACACGCATTGACTACAAT
ACCGCAATCCCCTCTAGGATCCCCCCAGGTTTCTGAGTTCCCCGCAATCC
CCTCTAAGATCCCCGGGTTTCTGAGTCCCCCCCGTCACCTTTTTGACCTA
GAGGCATGGTTTCTCTGAGATAACGCGGTTCGTCGCCCGCGGCCTGTACC
GAAACTTCTCGCTGTTTCGCATGTGCTTCGAGCAGGAGGCGAGGTGCTGC
AGAGAGTTCCGGCAGGTTCAGGTGGAGACCCCGCTCGAGTTGCCGCCGTT
GCAGGAGGCCGAGCCAGCTTGATCGGGATTATTTGCTTCAATCAGGCGGC
ACACGCATTGACTACAATACCGCAATCCCCTCTAGGATCCCCCCAGGTTT
CTGAGTTCCCCGCAATCCCCTCTAAGATCCCCGGGTTTCTGAGTCCCCCC
CGTCACCTTTTTGACCTAGAGGCATGGTTTCTCTGA
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