prot_L-elsbetiae_contig483.12725.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig483.12725.1
Unique Nameprot_L-elsbetiae_contig483.12725.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length149
Homology
BLAST of mRNA_L-elsbetiae_contig483.12725.1 vs. uniprot
Match: D7FV36_ECTSI (Mediator of RNA polymerase II transcription subunit 21 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV36_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 1.780e-72
Identity = 123/151 (81.46%), Postives = 131/151 (86.75%), Query Frame = 0
Query:    1 MEGDNDAVSMMQESVDQLALSMFDSLRLIPFSEEIKGGARGVAPQSQEAPG---AVPLRRAVATNAAWAGQVQSLAEGVLKQANILDGLIDELPGAELREDQQMEEIARLDKEGRLRRAELTKMVEKAEGMSKGVNGSLDRLADHMLAAPR 148
            ME D DAVS MQESVDQLALSMFDSLRLIPFSEE+KGGARGVAP  Q+ PG   A PLRRAV TNAAWA  VQSLA+GVLKQA  LDGLID LPGAELREDQQMEEIARLD+EG+L+R EL KMVEKAE +SKGVNGSLD+LADHML APR
Sbjct:   21 MEVDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVAPLQQQQPGQPDAAPLRRAVTTNAAWADTVQSLADGVLKQARALDGLIDVLPGAELREDQQMEEIARLDREGKLKRTELAKMVEKAEALSKGVNGSLDQLADHMLGAPR 171          
BLAST of mRNA_L-elsbetiae_contig483.12725.1 vs. uniprot
Match: K3X2M6_GLOUD (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2M6_GLOUD)

HSP 1 Score: 61.6 bits (148), Expect = 3.730e-9
Identity = 46/139 (33.09%), Postives = 67/139 (48.20%), Query Frame = 0
Query:    6 DAVSMMQESVDQLALSMFDSLRLIPFSEEIKGGARGVAPQSQEAPGAVPLRRAVATNAAWAGQVQSLAEGVLKQANILDGLIDELPGAELREDQQMEEIARLDKEGRLRRAELTKMVEKAEGMSKGVNGSLDRLADHML 144
            D VSM+QESVD++ALSMF++LRL+P S   +G     A                         ++SLA  VL+     D LID+LPG E  E +Q+EE+  L  +       L ++ E+AE        SL  +++  L
Sbjct:   33 DKVSMLQESVDKMALSMFNALRLLPASTGDEGSKEETA-----------------------AAIRSLANDVLRMVKETDALIDDLPGLEKTESEQLEELRHLQIQSEEEAQTLRQVAEEAERWMDRARDSLRVISETRL 148          
BLAST of mRNA_L-elsbetiae_contig483.12725.1 vs. uniprot
Match: A0A5D6YEG9_9STRA (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YEG9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.550e-8
Identity = 46/139 (33.09%), Postives = 69/139 (49.64%), Query Frame = 0
Query:    6 DAVSMMQESVDQLALSMFDSLRLIPFSEEIKGGARGVAPQSQEAPGAVPLRRAVATNAAWAGQVQSLAEGVLKQANILDGLIDELPGAELREDQQMEEIARLDKEGRLRRAELTKMVEKAEGMSKGVNGSLDRLADHML 144
            D VS++QESVD++ALSMF++LRL+P    +  G R                      A  A  ++SLA+ VL+     D LID+LPG +  E  Q+EE+ RL  E       L ++ ++AE        SL  +++  L
Sbjct:   26 DKVSLLQESVDKMALSMFNALRLLP----VGSGDR----------------------AETATAIRSLADDVLRMVKETDALIDDLPGLDKTESDQLEELRRLQIESEEEAQTLRQVADEAERWMDRARDSLRVISETRL 138          
BLAST of mRNA_L-elsbetiae_contig483.12725.1 vs. uniprot
Match: A0A0W8DSH2_PHYNI (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DSH2_PHYNI)

HSP 1 Score: 60.8 bits (146), Expect = 4.830e-8
Identity = 47/129 (36.43%), Postives = 67/129 (51.94%), Query Frame = 0
Query:    6 DAVSMMQESVDQLALSMFDSLRLIPFSEEIKGGARGVAPQSQEAPGAVPLRRAVATNAAWAGQVQSLAEGVLKQANILDGLIDELPGAELREDQQMEEIARLDKEGRLRRAELTKMVEKAEGMSKGVNG 134
            D VS++QESVD++ALSMF++LRL+P        A G   ++QE   A+                 +LA  VLK     D LID+LPG +  E +QMEE+ RL  E       L ++ E+AE     ++G
Sbjct:   37 DKVSLLQESVDKMALSMFNALRLLP-------AATGDDAKNQETKDAIT----------------TLANDVLKMVQETDALIDDLPGLDKTEAEQMEELRRLQIESDEEAQTLRQVAEEAEKTMADIHG 142          
BLAST of mRNA_L-elsbetiae_contig483.12725.1 vs. uniprot
Match: A0A0W8D6Q5_PHYNI (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D6Q5_PHYNI)

HSP 1 Score: 60.1 bits (144), Expect = 9.590e-8
Identity = 47/129 (36.43%), Postives = 66/129 (51.16%), Query Frame = 0
Query:    6 DAVSMMQESVDQLALSMFDSLRLIPFSEEIKGGARGVAPQSQEAPGAVPLRRAVATNAAWAGQVQSLAEGVLKQANILDGLIDELPGAELREDQQMEEIARLDKEGRLRRAELTKMVEKAEGMSKGVNG 134
            D VS++QESVD++ALSMF +LRL+P        A G   ++QE   A+                 +LA  VLK     D LID+LPG +  E +QMEE+ RL  E       L ++ E+AE     ++G
Sbjct:   37 DKVSLLQESVDKMALSMFXALRLLP-------AATGDDAKNQETKDAIT----------------TLANDVLKMVQETDALIDDLPGLDKTEAEQMEELRRLQIESDEEAQTLRQVAEEAEKTMADIHG 142          
BLAST of mRNA_L-elsbetiae_contig483.12725.1 vs. uniprot
Match: A0A329SC90_9STRA (Mediator of RNA polymerase II transcription subunit 21 n=15 Tax=Phytophthora TaxID=4783 RepID=A0A329SC90_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.160e-7
Identity = 47/139 (33.81%), Postives = 68/139 (48.92%), Query Frame = 0
Query:    6 DAVSMMQESVDQLALSMFDSLRLIPFSEEIKGGARGVAPQSQEAPGAVPLRRAVATNAAWAGQVQSLAEGVLKQANILDGLIDELPGAELREDQQMEEIARLDKEGRLRRAELTKMVEKAEGMSKGVNGSLDRLADHML 144
            D VS++QES+D+ ALSMF++LRL+P + E          + QE   A+                 +LA  VLK     D LID+LPG +  E +QMEE+ RL  E       L ++ E+AE        SL  +++  L
Sbjct:   37 DKVSLLQESLDKTALSMFNALRLLPAATEDDA-------KKQETKDAIT----------------TLANDVLKMVQETDALIDDLPGLDKTEAEQMEELRRLQIESEEEAQTLRQVAEEAERWMDRARDSLRVISETRL 152          
BLAST of mRNA_L-elsbetiae_contig483.12725.1 vs. uniprot
Match: A0A0P1AZ48_PLAHL (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AZ48_PLAHL)

HSP 1 Score: 56.6 bits (135), Expect = 2.400e-7
Identity = 47/139 (33.81%), Postives = 68/139 (48.92%), Query Frame = 0
Query:    6 DAVSMMQESVDQLALSMFDSLRLIPFSEEIKGGARGVAPQSQEAPGAVPLRRAVATNAAWAGQVQSLAEGVLKQANILDGLIDELPGAELREDQQMEEIARLDKEGRLRRAELTKMVEKAEGMSKGVNGSLDRLADHML 144
            D VS++QESVD+ ALSMF++LRL+P          G     QEA  A+                 +LA  VL+     D LID+LPG +  E +QMEE+ RL  +       L ++ E+AE   +    SL  +++  L
Sbjct:   22 DKVSLLQESVDKTALSMFNALRLLPL-------VTGDEANKQEAKDAI----------------MTLANDVLRMVQETDVLIDDLPGLDKTEAEQMEEMRRLQIQSEEEAQNLRQVAEEAERWMERSRDSLRVISETRL 137          
BLAST of mRNA_L-elsbetiae_contig483.12725.1 vs. uniprot
Match: A0A2P4YLZ2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YLZ2_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.240e-7
Identity = 45/124 (36.29%), Postives = 65/124 (52.42%), Query Frame = 0
Query:    6 DAVSMMQESVDQLALSMFDSLRLIPFSEEIKGGARGVAPQSQEAPGAVPLRRAVATNAAWAGQVQSLAEGVLKQANILDGLIDELPGAELREDQQMEEIARLDKEGRLRRAELTKMVEKAEGMS 129
            D VS++QESVD++ALSMF++LRL+P        A G   + QE   A+                 +LA  VLK     D LID+LPG +  E +QMEE+ RL  +       L ++ E+A+ M+
Sbjct:   34 DKVSLLQESVDKMALSMFNALRLLPV-------ATGDDTKKQETKDAIT----------------TLANDVLKMVQETDALIDDLPGLDKTEAEQMEELRRLQIQSEEEAQTLRQVAEEADVMA 134          
BLAST of mRNA_L-elsbetiae_contig483.12725.1 vs. uniprot
Match: A0A8J5MCX3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MCX3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.530e-7
Identity = 45/121 (37.19%), Postives = 62/121 (51.24%), Query Frame = 0
Query:    6 DAVSMMQESVDQLALSMFDSLRLIPFSEEIKGGARGVAPQSQEAPGAVPLRRAVATNAAWAGQVQSLAEGVLKQANILDGLIDELPGAELREDQQMEEIARLDKEGRLRRAELTKMVEKAE 126
            D VS++QESVD+ ALSMF++LRL+P + E          + QE   A+                 +LA  VLK     D LID+LPG +  E +QMEE+ RL  E       L ++ E+AE
Sbjct:   37 DKVSLLQESVDKTALSMFNALRLLPAATEDDA-------KKQETKDAIT----------------TLANDVLKMVQETDALIDDLPGLDKTEAEQMEELRRLQIESEEEAQTLRQVAEEAE 134          
BLAST of mRNA_L-elsbetiae_contig483.12725.1 vs. uniprot
Match: H3GPH5_PHYRM (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GPH5_PHYRM)

HSP 1 Score: 57.4 bits (137), Expect = 7.140e-7
Identity = 45/121 (37.19%), Postives = 62/121 (51.24%), Query Frame = 0
Query:    6 DAVSMMQESVDQLALSMFDSLRLIPFSEEIKGGARGVAPQSQEAPGAVPLRRAVATNAAWAGQVQSLAEGVLKQANILDGLIDELPGAELREDQQMEEIARLDKEGRLRRAELTKMVEKAE 126
            D VS++QESVD+ ALSMF++LRL+P        A G   + QE   A+                 +LA  VLK     D LID+LPG +  E +QMEE+ RL  +       L ++ E+AE
Sbjct:   31 DKVSLLQESVDKTALSMFNALRLLP-------AATGDDAKQQETKDAIT----------------TLANDVLKMVQETDALIDDLPGLDKTEAEQMEELRRLQIQSEEEAQTLRQVAEEAE 128          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig483.12725.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FV36_ECTSI1.780e-7281.46Mediator of RNA polymerase II transcription subuni... [more]
K3X2M6_GLOUD3.730e-933.09Mediator of RNA polymerase II transcription subuni... [more]
A0A5D6YEG9_9STRA4.550e-833.09Mediator of RNA polymerase II transcription subuni... [more]
A0A0W8DSH2_PHYNI4.830e-836.43Mediator of RNA polymerase II transcription subuni... [more]
A0A0W8D6Q5_PHYNI9.590e-836.43Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A329SC90_9STRA1.160e-733.81Mediator of RNA polymerase II transcription subuni... [more]
A0A0P1AZ48_PLAHL2.400e-733.81Mediator of RNA polymerase II transcription subuni... [more]
A0A2P4YLZ2_9STRA3.240e-736.29Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A8J5MCX3_9STRA4.530e-737.19Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
H3GPH5_PHYRM7.140e-737.19Mediator of RNA polymerase II transcription subuni... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021384Mediator complex, subunit Med21PFAMPF11221Med21coord: 6..140
e-value: 2.0E-21
score: 76.8
IPR021384Mediator complex, subunit Med21PANTHERPTHR13381RNA POLYMERASE II HOLOENZYME COMPONENT SRB7coord: 6..144
NoneNo IPR availableGENE3D1.20.58.470coord: 5..142
e-value: 5.1E-11
score: 44.7
NoneNo IPR availablePANTHERPTHR13381:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 21coord: 6..144
IPR037212Mediator complex, subunit Med7/Med21-likeSUPERFAMILY140718Mediator hinge subcomplex-likecoord: 6..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig483contigL-elsbetiae_contig483:4973..7537 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig483.12725.1mRNA_L-elsbetiae_contig483.12725.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig483 4954..8026 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig483.12725.1 ID=prot_L-elsbetiae_contig483.12725.1|Name=mRNA_L-elsbetiae_contig483.12725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
MEGDNDAVSMMQESVDQLALSMFDSLRLIPFSEEIKGGARGVAPQSQEAP
GAVPLRRAVATNAAWAGQVQSLAEGVLKQANILDGLIDELPGAELREDQQ
MEEIARLDKEGRLRRAELTKMVEKAEGMSKGVNGSLDRLADHMLAAPR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021384Mediator_Med21
IPR037212Med7/Med21-like