mRNA_L-elsbetiae_contig1143.1246.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1143.1246.1
Unique NamemRNA_L-elsbetiae_contig1143.1246.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1143.1246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1143contigL-elsbetiae_contig1143:2053..3256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size710
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1143.1246.1prot_L-elsbetiae_contig1143.1246.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1143 2333..3220 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815349.9029408-UTR-L-elsbetiae_contig1143:2052..21561622815349.9029408-UTR-L-elsbetiae_contig1143:2052..2156Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1143 2053..2156 +
1691682854.513566-UTR-L-elsbetiae_contig1143:2052..21561691682854.513566-UTR-L-elsbetiae_contig1143:2052..2156Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1143 2053..2156 +
1622815349.9120376-UTR-L-elsbetiae_contig1143:2311..23321622815349.9120376-UTR-L-elsbetiae_contig1143:2311..2332Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1143 2312..2332 +
1691682854.5254152-UTR-L-elsbetiae_contig1143:2311..23321691682854.5254152-UTR-L-elsbetiae_contig1143:2311..2332Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1143 2312..2332 +
1622815349.9447489-UTR-L-elsbetiae_contig1143:3220..32561622815349.9447489-UTR-L-elsbetiae_contig1143:3220..3256Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1143 3221..3256 +
1691682854.5578191-UTR-L-elsbetiae_contig1143:3220..32561691682854.5578191-UTR-L-elsbetiae_contig1143:3220..3256Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1143 3221..3256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815349.9245164-CDS-L-elsbetiae_contig1143:2332..28551622815349.9245164-CDS-L-elsbetiae_contig1143:2332..2855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1143 2333..2855 +
1691682854.5355587-CDS-L-elsbetiae_contig1143:2332..28551691682854.5355587-CDS-L-elsbetiae_contig1143:2332..2855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1143 2333..2855 +
1622815349.934864-CDS-L-elsbetiae_contig1143:3194..32201622815349.934864-CDS-L-elsbetiae_contig1143:3194..3220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1143 3195..3220 +
1691682854.547653-CDS-L-elsbetiae_contig1143:3194..32201691682854.547653-CDS-L-elsbetiae_contig1143:3194..3220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1143 3195..3220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1143.1246.1

>prot_L-elsbetiae_contig1143.1246.1 ID=prot_L-elsbetiae_contig1143.1246.1|Name=mRNA_L-elsbetiae_contig1143.1246.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=183bp
MLHLLSGNVHVAAKMAKCPSFENTLVADLTRQLFRRKAAHAKHLAEIRQQ
SDWSAAAANIWAAGTETDAFIAPVAEVDKKGADKLFFALDILKNVLQATR
RVDKVASSTNKRQEGALRFKEVLRFLYRDCHYEEEMEKRHRCSRGVLRVL
GLGLGLRGRHRRAPSKPSCTHQRKATLMRTLS*
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mRNA from alignment at L-elsbetiae_contig1143:2053..3256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1143.1246.1 ID=mRNA_L-elsbetiae_contig1143.1246.1|Name=mRNA_L-elsbetiae_contig1143.1246.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1204bp|location=Sequence derived from alignment at L-elsbetiae_contig1143:2053..3256+ (Laminarionema elsbetiae ELsaHSoW15)
TGTTGAAGTCACTGCGCGCTAACGGGCCGACGACCCTGCCGCGGCTGCTG
GGTGCTGGTGTGATCGAGGTTCTGCTAAAAGGGGTGGAATCCTCGAATGA
AGAGGTAAGAGACCATGGCCGCCTAGACGTAGACTATATCTATCTACGTG
TCACCGAGATAAATAATAAGATAGTCTACGTAGCTTGTGGACACGGGTTT
GGTGTACAATCATTCGTAACCCATTCACGTTCGTTGCGAATATGTCTACT
ATGTTCCAGGTCGGCGCGCTTTGCTACCGAATGCTGCACCTTCTCTCCGG
CAACGTACACGTGGCGGCGAAGATGGCGAAATGCCCGTCGTTCGAGAACA
CTCTCGTCGCGGATCTGACGCGGCAGCTATTCAGGAGGAAGGCTGCCCAT
GCGAAACACCTGGCCGAAATACGGCAGCAATCCGATTGGAGTGCCGCAGC
AGCCAATATCTGGGCGGCGGGAACCGAGACCGACGCATTTATTGCGCCCG
TCGCAGAGGTGGATAAAAAGGGTGCAGATAAGCTGTTTTTTGCTCTTGAC
ATTCTCAAGAATGTCTTGCAAGCTACTCGGCGTGTGGATAAAGTGGCGTC
CTCCACGAACAAGCGACAGGAAGGCGCCCTTCGGTTCAAGGAGGTCCTGC
GCTTCCTGTACCGTGATTGTCACTACGAAGAAGAGATGGAGAAACGGCAC
AGGTGCTCCAGAGGTGTCTTGCGGGTTTTGGGACTGGGACTGGGACTTCG
TGGGAGACATCGCAGAGCTCCTAGTAAACCCTCATGCACCCACCAGCGAA
AGGGTGAGCGGGCGCCTACAGCACATGAATGACTGCGCATGCTGCATCGA
ATAAGTTCCCCTTGTGCACACTCTCACCAGGTGTATCTAGACCTAGATAT
ACTTAGATATGTTGATCAGCAATAAATATGGGGTGTTTGATTTCATTTTC
AATTAATCATTTTTGAGTTGGGGCAGGGAGTATAGACTATGGTATTCACG
TCGTGTAATTGCTAATTTCGATAGAAAACGTTCCGTATTGTTCGACAAAG
GCCTTGCCGGCCTATATAATTTGGGTTTTTAATGAACCGCGTGGTCGGGG
TTGATAACCTTGATGCCCCCTCCCCCCTGACTTTTCAATCAGCAACTTTG
ATGCGAACATTATCTTAAACGGACGACAGACGGGGAAGGTCGTCCAGACG
AAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1143:2053..3256+

>mRNA_L-elsbetiae_contig1143.1246.1 ID=mRNA_L-elsbetiae_contig1143.1246.1|Name=mRNA_L-elsbetiae_contig1143.1246.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1098bp|location=Sequence derived from alignment at L-elsbetiae_contig1143:2053..3256+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCACCTTCTCTCCGGCAACGTACACGTGGCGGCGAAGATGGCGAA
ATGCCCGTCGTTCGAGAACACTCTCGTCGCGGATCTGACGCGGCAGCTAT
TCAGGAGGAAGGCTGCCCATGCGAAACACCTGGCCGAAATACGGCAGCAA
TCCGATTGGAGTGCCGCAGCAGCCAATATCTGGGCGGCGGGAACCGAGAC
CGACGCATTTATTGCGCCCGTCGCAGAGGTGGATAAAAAGGGTGCAGATA
AGCTGTTTTTTGCTCTTGACATTCTCAAGAATGTCTTGCAAGCTACTCGG
CGTGTGGATAAAGTGGCGTCCTCCACGAACAAGCGACAGGAAGGCGCCCT
TCGGTTCAAGGAGGTCCTGCGCTTCCTGTACCGTGATTGTCACTACGAAG
AAGAGATGGAGAAACGGCACAGGTGCTCCAGAGGTGTCTTGCGGGTTTTG
GGACTGGGACTGGGACTTCGTGGGAGACATCGCAGAGCTCCTAGTAAACC
CTCATGCACCCACCAGCGAAAGGATGCTGCACCTTCTCTCCGGCAACGTA
CACGTGGCGGCGAAGATGGCGAAATGCCCGTCGTTCGAGAACACTCTCGT
CGCGGATCTGACGCGGCAGCTATTCAGGAGGAAGGCTGCCCATGCGAAAC
ACCTGGCCGAAATACGGCAGCAATCCGATTGGAGTGCCGCAGCAGCCAAT
ATCTGGGCGGCGGGAACCGAGACCGACGCATTTATTGCGCCCGTCGCAGA
GGTGGATAAAAAGGGTGCAGATAAGCTGTTTTTTGCTCTTGACATTCTCA
AGAATGTCTTGCAAGCTACTCGGCGTGTGGATAAAGTGGCGTCCTCCACG
AACAAGCGACAGGAAGGCGCCCTTCGGTTCAAGGAGGTCCTGCGCTTCCT
GTACCGTGATTGTCACTACGAAGAAGAGATGGAGAAACGGCACAGGTGCT
CCAGAGGTGTCTTGCGGGTTTTGGGACTGGGACTGGGACTTCGTGGGAGA
CATCGCAGAGCTCCTAGTAAACCCTCATGCACCCACCAGCGAAAGGCAAC
TTTGATGCGAACATTATCTTAACAACTTTGATGCGAACATTATCTTAA
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