mRNA_L-elsbetiae_contig10051.98.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10051.98.1
Unique NamemRNA_L-elsbetiae_contig10051.98.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10051.98.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10051contigL-elsbetiae_contig10051:6273..6682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815238.3744366-CDS-L-elsbetiae_contig10051:6272..64791622815238.3744366-CDS-L-elsbetiae_contig10051:6272..6479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10051 6273..6479 +
1691682788.9009552-CDS-L-elsbetiae_contig10051:6272..64791691682788.9009552-CDS-L-elsbetiae_contig10051:6272..6479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10051 6273..6479 +
1622815238.4170558-CDS-L-elsbetiae_contig10051:6610..66821622815238.4170558-CDS-L-elsbetiae_contig10051:6610..6682Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10051 6611..6682 +
1691682788.9117458-CDS-L-elsbetiae_contig10051:6610..66821691682788.9117458-CDS-L-elsbetiae_contig10051:6610..6682Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10051 6611..6682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10051.98.1prot_L-elsbetiae_contig10051.98.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10051 6273..6682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10051.98.1

>prot_L-elsbetiae_contig10051.98.1 ID=prot_L-elsbetiae_contig10051.98.1|Name=mRNA_L-elsbetiae_contig10051.98.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
GFDTYLSLGVPPLRKGHRRACAISALRQMCLSSNKLISRCRATRRQRSDC
WSAQWTLRPGGTPPVLPVKLASATRATALSGSPPARRRQPWQ*
back to top

mRNA from alignment at L-elsbetiae_contig10051:6273..6682+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10051.98.1 ID=mRNA_L-elsbetiae_contig10051.98.1|Name=mRNA_L-elsbetiae_contig10051.98.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=410bp|location=Sequence derived from alignment at L-elsbetiae_contig10051:6273..6682+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTTCGATACCTACCTCTCGTTGGGCGTCCCACCACTCAGGAAAGGGCA
TCGCAGGGCTTGCGCGATCTCCGCTCTAAGGCAAATGTGTCTCTCCTCCA
ACAAGCTGATATCCAGATGCAGAGCAACCCGTCGGCAGCGCTCGGACTGT
TGGAGCGCGCAGTGGACGTTACGACCTGGGGGAACACCTCCAGTGCTTCC
AGTGAAGGTACGGCTTGGCGTGACCTGCTTTTGTTTCGGATTTGATTGGT
TTCGGTCCTATGACGAACGAGATATGTGCCTGCTACGTTCTTCAGCTCGT
TTACACGCAAACGGCACCTTTCCAATTTTCCCTGGCAGCTTGCATCTGCG
ACGCGAGCGACCGCGCTTTCAGGCTCGCCGCCCGCAAGGCGACGACAGCC
GTGGCAGTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10051:6273..6682+

>mRNA_L-elsbetiae_contig10051.98.1 ID=mRNA_L-elsbetiae_contig10051.98.1|Name=mRNA_L-elsbetiae_contig10051.98.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig10051:6273..6682+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTTCGATACCTACCTCTCGTTGGGCGTCCCACCACTCAGGAAAGGGCA
TCGCAGGGCTTGCGCGATCTCCGCTCTAAGGCAAATGTGTCTCTCCTCCA
ACAAGCTGATATCCAGATGCAGAGCAACCCGTCGGCAGCGCTCGGACTGT
TGGAGCGCGCAGTGGACGTTACGACCTGGGGGAACACCTCCAGTGCTTCC
AGTGAAGGGCTTCGATACCTACCTCTCGTTGGGCGTCCCACCACTCAGGA
AAGGGCATCGCAGGGCTTGCGCGATCTCCGCTCTAAGGCAAATGTGTCTC
TCCTCCAACAAGCTGATATCCAGATGCAGAGCAACCCGTCGGCAGCGCTC
GGACTGTTGGAGCGCGCAGTGGACGTTACGACCTGGGGGAACACCTCCAG
TGCTTCCAGTGAAGCTTGCATCTGCGACGCGAGCGACCGCGCTTTCAGGC
TCGCCGCCCGCAAGGCGACGACAGCCGTGGCAGTAGCTTGCATCTGCGAC
GCGAGCGACCGCGCTTTCAGGCTCGCCGCCCGCAAGGCGACGACAGCCGT
GGCAGTAG
back to top