prot_L-elsbetiae_contig10878.801.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10878.801.1
Unique Nameprot_L-elsbetiae_contig10878.801.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length147
Homology
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BLAST of mRNA_L-elsbetiae_contig10878.801.1 vs. uniprot
Match: A0A6H5JWR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR3_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 1.350e-80
Identity = 120/146 (82.19%), Postives = 132/146 (90.41%), Query Frame = 0 
Query:    1 RVAFRLVNLVFATVFLASAALQYNDEGGVAWAALYFVAAVFCILSELSWRHLRTFLVLPTLWVFTIGSVIGAAYVLIALLLMGDPGEGASGEDAMDFYGLVLVSFWMSTVLILDRHNVVGVFRGYTSLTEHERDREGHVQMGEVIL 146
            RV FRL+NL FA VFL+SA LQYND+ G+AWAALYF+AAVFCILSELSWRHLRTFLVLPTLW+FT+ S IGA YVLIA LL+G    GASGEDAMDFYGL+LVSFWMS VL+LDRHNVVGVFRGYTSLTEHERDREGHVQMGEV++
Sbjct:   67 RVTFRLINLGFAAVFLSSAILQYNDDDGIAWAALYFMAAVFCILSELSWRHLRTFLVLPTLWMFTLCSWIGAGYVLIAQLLVGHAEGGASGEDAMDFYGLLLVSFWMSIVLLLDRHNVVGVFRGYTSLTEHERDREGHVQMGEVVI 212
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BLAST of mRNA_L-elsbetiae_contig10878.801.1 vs. uniprot
Match: D7FJF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJF2_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 1.270e-60
Identity = 95/114 (83.33%), Postives = 101/114 (88.60%), Query Frame = 0 
Query:   33 ALYFVAAVFCILSELSWRHLRTFLVLPTLWVFTIGSVIGAAYVLIALLLMGDPGEGASGEDAMDFYGLVLVSFWMSTVLILDRHNVVGVFRGYTSLTEHERDREGHVQMGEVIL 146
            A Y  AAVFCILSELSWR LRTF VLPTLWVFT+ S IGAAYVLIA LL+G    GASGEDAMDFYGL+LVSFWMS VL+LDRHNVVGVFRGYTSLTEHERDREGHVQMGEV++
Sbjct:    5 ARYDAAAVFCILSELSWRQLRTFFVLPTLWVFTLCSWIGAAYVLIAQLLVGHAEGGASGEDAMDFYGLLLVSFWMSIVLLLDRHNVVGVFRGYTSLTEHERDREGHVQMGEVVI 118
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10878.801.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWR3_9PHAE1.350e-8082.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJF2_ECTSI1.270e-6083.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029377TMEM220 proteinPFAMPF15071TMEM220coord: 15..110
e-value: 1.1E-7
score: 32.5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 84..94
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 50..60
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 114..146
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 61..83
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..15
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 95..113
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..49
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..28
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..19
score: 0.574
NoneNo IPR availableTMHMMTMhelixcoord: 97..119
NoneNo IPR availableTMHMMTMhelixcoord: 28..47
NoneNo IPR availableTMHMMTMhelixcoord: 7..24
NoneNo IPR availableTMHMMTMhelixcoord: 60..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10878contigL-elsbetiae_contig10878:3639..5304 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10878.801.1mRNA_L-elsbetiae_contig10878.801.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10878 2432..5304 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10878.801.1 ID=prot_L-elsbetiae_contig10878.801.1|Name=mRNA_L-elsbetiae_contig10878.801.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
RVAFRLVNLVFATVFLASAALQYNDEGGVAWAALYFVAAVFCILSELSWR
HLRTFLVLPTLWVFTIGSVIGAAYVLIALLLMGDPGEGASGEDAMDFYGL
VLVSFWMSTVLILDRHNVVGVFRGYTSLTEHERDREGHVQMGEVIL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029377TMEM220