mRNA_L-elsbetiae_contig10874.799.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10874.799.1
Unique NamemRNA_L-elsbetiae_contig10874.799.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10874.799.1 vs. uniprot
Match: D7G0Z0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z0_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 2.150e-19
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 MGTVVPAPLQYPVAKSSTRFAASMTRMFYCASLWEKLCAVIELVQASVGK 150
            MGTVVPAPLQYPVAKS  RFAASMTRMFYC SL +KL AV++L++ASVG+
Sbjct:    1 MGTVVPAPLQYPVAKSGARFAASMTRMFYCDSLADKLWAVVQLIRASVGR 50
[Close]
BLAST of mRNA_L-elsbetiae_contig10874.799.1 vs. uniprot
Match: A0A6H5KWG9_9PHAE (ALDH protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWG9_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 7.930e-17
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 MGTVVPAPLQYPVAKSSTRFAASMTRMFYCASLWEKLCAVIELVQASVGK 150
            MGTVVPAPLQYPVAKS  RFAASMTRMFYC SL +KL AV++LV+ASVG+
Sbjct:  559 MGTVVPAPLQYPVAKSGARFAASMTRMFYCDSLADKLWAVVQLVRASVGR 608
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10874.799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0Z0_ECTSI2.150e-1978.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWG9_9PHAE7.930e-1780.00ALDH protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10874contigL-elsbetiae_contig10874:3544..5019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_003910.1
Exons2
Model size153
Cds size153
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815305.3576646-CDS-L-elsbetiae_contig10874:3543..36661622815305.3576646-CDS-L-elsbetiae_contig10874:3543..3666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10874 3544..3666 -
1691682828.3547387-CDS-L-elsbetiae_contig10874:3543..36661691682828.3547387-CDS-L-elsbetiae_contig10874:3543..3666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10874 3544..3666 -
1622815305.369559-CDS-L-elsbetiae_contig10874:4989..50191622815305.369559-CDS-L-elsbetiae_contig10874:4989..5019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10874 4990..5019 -
1691682828.363846-CDS-L-elsbetiae_contig10874:4989..50191691682828.363846-CDS-L-elsbetiae_contig10874:4989..5019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10874 4990..5019 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10874.799.1prot_L-elsbetiae_contig10874.799.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10874 3544..5019 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10874.799.1

>prot_L-elsbetiae_contig10874.799.1 ID=prot_L-elsbetiae_contig10874.799.1|Name=mRNA_L-elsbetiae_contig10874.799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=51bp
MGTVVPAPLQYPVAKSSTRFAASMTRMFYCASLWEKLCAVIELVQASVGK
*
back to top

mRNA from alignment at L-elsbetiae_contig10874:3544..5019-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10874.799.1 ID=mRNA_L-elsbetiae_contig10874.799.1|Name=mRNA_L-elsbetiae_contig10874.799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1476bp|location=Sequence derived from alignment at L-elsbetiae_contig10874:3544..5019- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCACCGTGGTGCCTGCTCCGCTTCAGGTACGAGCTGCTGTACTATG
TGTGTACATGCATATACAAGAACACGTGACCCCGGTCGGGTCGTCTAGCT
AGAGTCGTAGTGGAGGAAGGAGGCCAGCGGGGCAGACGACGAATAAGCCA
ATAATGGGAAGAAAGAAAGAAAAAAACCGCTCGCTTTTTTGGCCGGTTTC
TCTACTGAGGCACACATGTTCGTATGTATCATCCACGTCTATGTACATGC
GTAGCTGCGTCATCGGCGGCGGAGCCCCCCGACGCGGGCATTTTTTTTTT
GTTATTGCGTCTGCCGGTGGTTCTTGTTTGTTGTTATTATTTCGTTTGCC
CCCCGGCAATAGCAGGTAAACACATACGTAGATCCAACAAACACACTCAC
TCATCCCACACGTACGTATCATACTTGATGTTAAGACACAAAATACCTGG
TACTCAGTATAGGTATGATAAGATTTCGATATCATTTCCGCTGTGCTTTT
GGGGGATGCTTTGGTGTGTTGTGAAAATTATTGTTTTTCGCGACACCCTT
CGCGCGCCCCACACACCTGTACCGCGCTTGCTGCGTTCGTCCTGATGGAG
TCCGTCCATTCCGCCGTGGGCAGAGCAGAGACGTCTTGGGGACGATAATG
CATGATTTTTTTTTTCTCCTCCCATTATTGGCATATTCATCTGCTCCACT
GGCCCCCATACTCGGCTACGACTAGCTAGACCACCCAACCGCGGGTACAT
ATCTCGGTTTGATTGTACACATATACCAGTATACCGTAGGTGACACAAGA
TACCACACCCCCTGGGCAGATTTTCAAAGCTCGAATCCTCCCCAGCAAGA
AGCGGGCCAGTGCCGAAAGGGGTGGCGTTGGAAAGATCTAGTCGAGGGCT
GTCCGAAAATGTGTTGCTTGGTGCTGGCAACTTCTTCGTTACGGAGCAAT
GGAGCTCTAAAATTCGGTCCAAGGGGTGTGTATCTTCTTCGTTACGGAGC
AATGGAGCTCTAAAATTCGGTCCAAGGGGTGTGTATCTTTCTTTTTTCTT
TTTTTTTTGTCTGCCCATTATTGGTTTTTGTCGCCTGCCCCTCTGGCCCT
CATCCTCCACTTCTACTCTAGCTAGACGACCCAACCGAGGTCACTTGTGT
CACCTAAGGTATACATGTATATACATGTGTTGATGTGTGCGTGTTGATGG
CCCGGCTTATTTGTCCTCGGGCTCTCGACACCAACCCCTCGTTCGCAACT
CTCAAGCCGCTGTCACCGCACGCACGCCCGTGGCCTTGCCTCATTGCGCC
CGCCCCCCCCCCCCCCCCCTCCGGCATGTCGTTTTTTGCTCCTGCGACGG
CAGTACCCTGTGGCGAAGTCTAGCACAAGATTCGCGGCCAGCATGACCCG
CATGTTCTACTGCGCCTCCCTGTGGGAGAAGCTTTGTGCGGTGATCGAGC
TCGTTCAGGCATCGGTTGGGAAATGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10874:3544..5019-

>mRNA_L-elsbetiae_contig10874.799.1 ID=mRNA_L-elsbetiae_contig10874.799.1|Name=mRNA_L-elsbetiae_contig10874.799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=306bp|location=Sequence derived from alignment at L-elsbetiae_contig10874:3544..5019- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCACCGTGGTGCCTGCTCCGCTTCAGATGGGCACCGTGGTGCCTGC
TCCGCTTCAGTACCCTGTGGCGAAGTCTAGCACAAGATTCGCGGCCAGCA
TGACCCGCATGTTCTACTGCGCCTCCCTGTGGGAGAAGCTTTGTGCGGTG
ATCGAGCTCGTTCAGGCATCGGTTGGGAAATGATACCCTGTGGCGAAGTC
TAGCACAAGATTCGCGGCCAGCATGACCCGCATGTTCTACTGCGCCTCCC
TGTGGGAGAAGCTTTGTGCGGTGATCGAGCTCGTTCAGGCATCGGTTGGG
AAATGA
back to top